SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G08650 | AT | Annotation by Michelle Graham. TAIR10: Small GTP-binding protein | chr5:2806533-2813220 REVERSE LENGTH=681 | SoyBase | E_val: 0 | ISS |
| GO:0006098 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt | SoyBase | N/A | ISS |
| GO:0006364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: rRNA processing | SoyBase | N/A | ISS |
| GO:0009637 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to blue light | SoyBase | N/A | ISS |
| GO:0009902 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast relocation | SoyBase | N/A | ISS |
| GO:0010027 | GO-bp | Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization | SoyBase | N/A | ISS |
| GO:0010114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to red light | SoyBase | N/A | ISS |
| GO:0010218 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to far red light | SoyBase | N/A | ISS |
| GO:0015979 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosynthesis | SoyBase | N/A | ISS |
| GO:0015995 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chlorophyll biosynthetic process | SoyBase | N/A | ISS |
| GO:0019288 | GO-bp | Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | SoyBase | N/A | ISS |
| GO:0034660 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ncRNA metabolic process | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003746 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: translation elongation factor activity | SoyBase | N/A | ISS |
| GO:0003924 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTPase activity | SoyBase | N/A | ISS |
| GO:0005525 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTP binding | SoyBase | N/A | ISS |
| KOG0462 | KOG | Elongation factor-type GTP-binding protein | JGI | ISS | |
| PTHR23115 | Panther | TRANSLATION FACTOR | JGI | ISS | |
| PTHR23115:SF40 | Panther | GTP-BINDING PROTEIN LEPA | JGI | ISS | |
| PF00009 | PFAM | Elongation factor Tu GTP binding domain | JGI | ISS | |
| PF00679 | PFAM | Elongation factor G C-terminus | JGI | ISS | |
| PF03144 | PFAM | Elongation factor Tu domain 2 | JGI | ISS | |
| PF06421 | PFAM | GTP-binding protein LepA C-terminus | JGI | ISS | |
| UniRef100_A5B4D2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Translation factor GUF1 homolog, chloroplastic n=1 Tax=Vitis vinifera RepID=GUFP_VITVI | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JXW2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JXW2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma04g38360 not represented in the dataset |
Glyma04g38360 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g16700 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g206300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g38360.1 sequence type=CDS gene model=Glyma04g38360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCGCAGAAATTTGTGGCGGGTCTCTATTCTTATCCGTTAAAACTCAACTGCAACTGCAGCAGCGAAACCAGCAAAACGTGTTCTTCCATGCTCAACGTAGCAGAACGCGAAGAAGCACTACCAGATTCCACTCATCCAAACGCTGCTTTAGTTCTTCCGCCTTTCCAAATGCGTCCGCGTTTCGCCGCGGCGCCGTGTGCCAGGTCGCCAGCATCGACTTCGAATCCGCCGCCAAAGCCGGAGAGGATCGTCTCTCTAAGGTGCCGGTGCGTAATATAAGGAACTTCTGCATCATTGCGCATATTGACCACGGGAAATCCACGTTGGCGGATAAGTTGCTTCAGGTTACCGGCACGGTGCACCAGCGAGAGATGAAGGATCAGTTTCTCGATAACATGGATTTGGAGAGAGAAAGAGGCATCACTATTAAGCTCCAGGCAGCTAGAATGCGTTATGTGTTTGAAAATGAACCTTATTGCTTGAATCTAATAGATACTCCGGGGCATGTTGACTTCTCGTATGAGGTTTCTCGGTCACTCGCTGCATGTGAGGGTGCTCTTCTAGTAGTGGACGCTTCTCAGGGCGTTGAAGCACAAACCCTAGCTAATGTTTATTTGGCTTTGGAGAACAACCTGGAAATTATCCCTGTTTTGAACAAAATAGATCTCCCAGGTGCAGAACCAGATCGAGTAATCAAGGAGATTGAAGAGATTGTAGGTCTAGATTGTAGCAATGCGATTCTCTGCTCTGCAAAGGAAGGAATAGGTATAATTGAAATTCTCAATGCAATTGTTGCAAGAATTCCCCCACCTGAAGATACATCTAAAAAACCATTGAGGACTTTAATATTTGACAGCTACTATGATCCATATAGAGGTGTTATTGTATACTTTCGAGTTGTAGATGGGACTATAAAGAAAGGTGACAGAGTTTATTTTATGGCTAGTGGGAAGGATTATTTTGCTGATGAAATTGGAGTTTTGTCTCCTAGTCAACTACAAGTTGAAGAATTGTATGCTGGTGAGGTGGGCTATCTATCTGCATCAATAAGAACAGTAGCTGATGCTAGAGTGGGTGACACTGTTACTCACTATGGCAGAAAGGCTGACAATTCACTCCCTGGATATGAGGAAGCCACTCCTATGGTGTTCTGTGGCTTGTTTCCTGTTGATGCTGACCAATTCCCTGATCTGCGTGATGCACTTGAGAAGCTGCAACTCAATGATGCTGCACTTAAGTTTGAACCTGAGACATCGAGTGCCATGGGATTTGGCTTTAGATGTGGGTTTCTGGGCCTTCTTCATATGGAAATTGTTCAGGAGAGACTTGAGAGAGAATACAATTTGAGCCTGATAACAACTGCTCCAAGTGTCGTGTACAGGGTACACTGTGTAAATGGTGATACTGTTGAATGCTCAAATCCATCTTTACTTCCTGAGCCTGGAAAAAGGAAATCAATTGAGGAGCCATTTGTTAAGATTGAGATGCTTACACCAAAGGACTACATTGGTTCACTTATGGAACTGGCACAAGAAAGAAGAGGGCAGTTCAGAGAAATGAAATTTATTGCTGAAAATAGGGCATCAATCACGTATGAATTACCATTAGCAGAGATGGTTGGTGATTTCTTTGACCAGTTGAAGTCGAGAAGTAAGGGTTATGCTAGTATGGAGTATACCTTTGTCGGGTACACTGAAAGTAATTTAATTAAACTTGACATACGGATAAATGGTGACTGTGTGGAGCCATTGGCTACAATTGTGCACAATGATAAGGCATATTCGGTGGGAAGGGCTTTGACTCTAAAGTTGAAGGAGCTCATACCACGACAAATGTTTAAAGTACCAATTCAAGCGTGCATAGGATCAAAAGTGATCGCTAGTGAAGCGATATCCGCAATAAGGAAGGATGTACTAGCCAAATGCTACGGTGGGGATATTTCGAGAAAAAAGAAATTGCTTAAGAAACAGGCTGAAGGAAAGAAAAGGATGAAGTCTATTGGTAAAGTTGATGTTCCCCAAGAAGCTTTCATGGCAGTTTTGAAACTTGAAAAGGAGGTAATATGA
>Glyma04g38360.1 sequence type=predicted peptide gene model=Glyma04g38360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAAEICGGSLFLSVKTQLQLQQRNQQNVFFHAQRSRTRRSTTRFHSSKRCFSSSAFPNASAFRRGAVCQVASIDFESAAKAGEDRLSKVPVRNIRNFCIIAHIDHGKSTLADKLLQVTGTVHQREMKDQFLDNMDLERERGITIKLQAARMRYVFENEPYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPDRVIKEIEEIVGLDCSNAILCSAKEGIGIIEILNAIVARIPPPEDTSKKPLRTLIFDSYYDPYRGVIVYFRVVDGTIKKGDRVYFMASGKDYFADEIGVLSPSQLQVEELYAGEVGYLSASIRTVADARVGDTVTHYGRKADNSLPGYEEATPMVFCGLFPVDADQFPDLRDALEKLQLNDAALKFEPETSSAMGFGFRCGFLGLLHMEIVQERLEREYNLSLITTAPSVVYRVHCVNGDTVECSNPSLLPEPGKRKSIEEPFVKIEMLTPKDYIGSLMELAQERRGQFREMKFIAENRASITYELPLAEMVGDFFDQLKSRSKGYASMEYTFVGYTESNLIKLDIRINGDCVEPLATIVHNDKAYSVGRALTLKLKELIPRQMFKVPIQACIGSKVIASEAISAIRKDVLAKCYGGDISRKKKLLKKQAEGKKRMKSIGKVDVPQEAFMAVLKLEKEVI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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