SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G21980 | AT | Annotation by Michelle Graham. TAIR10: phosphatidylinositol-4-phosphate 5-kinase 1 | chr1:7735053-7738309 FORWARD LENGTH=752 | SoyBase | E_val: 0 | ISS |
| GO:0046488 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol metabolic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0003785 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: actin monomer binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016307 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphatidylinositol phosphate kinase activity | SoyBase | N/A | ISS |
| GO:0016308 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 1-phosphatidylinositol-4-phosphate 5-kinase activity | SoyBase | N/A | ISS |
| GO:0051015 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: actin filament binding | SoyBase | N/A | ISS |
| KOG0229 | KOG | Phosphatidylinositol-4-phosphate 5-kinase | JGI | ISS | |
| PTHR23086 | Panther | PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE | JGI | ISS | |
| PTHR23086:SF6 | Panther | PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE | JGI | ISS | |
| PF01504 | PFAM | Phosphatidylinositol-4-phosphate 5-Kinase | JGI | ISS | |
| PF02493 | PFAM | MORN repeat | JGI | ISS | |
| UniRef100_B9RHQ1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Phosphatidylinositol-4-phosphate 5-kinase, putative n=1 Tax=Ricinus communis RepID=B9RHQ1_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002339D96 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002339D96 related cluster n=1 Tax=unknown RepID=UPI0002339D96 | SoyBase | E_val: 0 | ISS |
|
Glyma04g38340 not represented in the dataset |
Glyma04g38340 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g16710 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g206100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g38340.2 sequence type=CDS gene model=Glyma04g38340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAAGAGACGCTCCTCACTCTCTCCGAACACCAACAAGACGACAACAACAAAGACATCGAGCTGCTCGTGGTTCCTCCGCCGCCGTGCCGCCGCCCTCCGCGGATGGCGCGGCGCGTGTCCCCCGGCGCGGTGGAAAAAGCCCTCCCCAACGGCGACATCTACAGCGGAAGCCTCTCCGGCAACGTCCCGCACGGCACCGGAAAATACCTCTGGTCGGATGGGTGCATGTACGAGGGCGACTGGAAGAAAGGCAAAGCGTGCGGCAAGGGCCGCTTCTCGTGGCCCTCCGGCGCGACCTACGAGGGCGAGTTCGCCGCCGGGAGAATGCACGGCCGCGGCACCTTCGTCGGCGTCGACGGCGACACCTACCGCGGCGCGTGGCTCTCCGACCGCAAGCACGGCTTCGGCGAGAAACGCTACGCCAACGGCGACGTCTACGAAGGGTTCTGGAGGTGCAACCTGCAGGAGGGGGAAGGGAGGTACACGTGGCGCAACGGAAACAACTACGTCGGAGAGTGGAAGGGTGGCGCCATCTCCGGCAAAGGCGTGTTGGTGTGGAAGAACGGGAACCGTTACGAAGGGTGCTGGGAGAACGGGGTTCCGAAGGGGAGAGGGGTGTTTACGTGGCGCGATGGAAGCACTTCCTCTGGGAATTGGGGGAAGGAGTTCGTGAATGAGAAACGCGTGTCGGTGGATGTCTGTAGTAATCACAACAATAATAAGAGTGTGAGTTTTCCCAGGATTTGTATTTGGGAGCTTGATGGTGAAGCTGGGGATATTACTTGTGATATTGTGGAGGCTTCTATGATTTATGGTGGTGGTGGAGGAGTGTGTGAGAGTGATGTACAGTTGCAGAAGAGTCCTTGTGGTTCTGTTGATGGGGATGTTAAGAAACCGGGTCATACTGTTTCTAAAGGCCATAAGAATTATGATTTGATGCTTAATCTTCAACTGGGTATTAGATACTCTGTTGGGAAGCACGCTTCGGTTTTGCGAGATCTTAGGCCGGGGGATTTTGATCCCAAGGAGAAGTTCTGGACTAGGTTTCCTCCAGAAGGGTCTAAGTTTACACCTCCACATCAATCTGTGGATTTCAGGTGGAAAGATTACTGCCCTGTGGTGTTCAGACATCTAAGGGAATTGTTTGGGATAGATCCTGCGGATTACATGCTTGCTATTTGCGGCAATGACACACTTAGGGAGATGTCTTCTCCTGGCAAAAGTGGAAGCTTCTTTTACCTCACTCAAGACGACTGGTTCATTATCAAAACCTTGAAGAAGTCGGAAGTCAAGGTGCTCATCAGGATGCTTCCAAGTTACTATCAACATGTGAGTCAGTACAAGAATTCGCTGGTGACAAAATTCCTGGGGGTTCATTGTGTCAAACCTATTGGAGGTCAGAAGACTCGGTTTATTGTGATGGGCAATGTATTTTGTTCGGAGTATCGGATCCATAAGCGGTTTGACCTCAAAGGTTCTTCTCATGGTCGTACAACTGATAAACCCCGGGAGGAAATTGACGAGACTACCACTCTTAAAGACCTTGATCTTTGTTTTGTCTTCCGCCTGGAACATTCTTGGTTTCAAGAGCTTAAATGGCAACTTGATAGAGACTGTGAATTCCTGGAAGCAGAGGGAATAATGGATTACAGTTTTTTGATTGGCCTTCATTTTCGTGATGATAGCTCAGTTGATGAAGTAAAGAGTTTACCAGACGAGTTGTGTTCAGGCAAGAGAGACATGCAAAATGATGACATACAGGATATGAAGTGGATACCCATAGACCGGGGACCTCTAATTCGTCTGGGAACAAACATGCCTGCCAGAGCAGAGAGAGTGTGTAAAGCTGGATTGGATCCGCACACTGGTACTGGAAGTAGCAATTCTACCCCTTCAGAGAGTGGTGGTGAGGTCTCTGATGTAATCCTTTACTTTGGTATAATTGACATTCTCCAAGATTATGATATAAGCAAAAAGCTAGAGCATGCATACAAGTCACTGCAAGTGGATCCCTCCTCCATCTCAGCCGTTGATCCCAAGCTATACTCCAAAAGGTTTAGGGATTTCATACACAGAATCTTTGTGGAGGACAAATGA
>Glyma04g38340.2 sequence type=predicted peptide gene model=Glyma04g38340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQETLLTLSEHQQDDNNKDIELLVVPPPPCRRPPRMARRVSPGAVEKALPNGDIYSGSLSGNVPHGTGKYLWSDGCMYEGDWKKGKACGKGRFSWPSGATYEGEFAAGRMHGRGTFVGVDGDTYRGAWLSDRKHGFGEKRYANGDVYEGFWRCNLQEGEGRYTWRNGNNYVGEWKGGAISGKGVLVWKNGNRYEGCWENGVPKGRGVFTWRDGSTSSGNWGKEFVNEKRVSVDVCSNHNNNKSVSFPRICIWELDGEAGDITCDIVEASMIYGGGGGVCESDVQLQKSPCGSVDGDVKKPGHTVSKGHKNYDLMLNLQLGIRYSVGKHASVLRDLRPGDFDPKEKFWTRFPPEGSKFTPPHQSVDFRWKDYCPVVFRHLRELFGIDPADYMLAICGNDTLREMSSPGKSGSFFYLTQDDWFIIKTLKKSEVKVLIRMLPSYYQHVSQYKNSLVTKFLGVHCVKPIGGQKTRFIVMGNVFCSEYRIHKRFDLKGSSHGRTTDKPREEIDETTTLKDLDLCFVFRLEHSWFQELKWQLDRDCEFLEAEGIMDYSFLIGLHFRDDSSVDEVKSLPDELCSGKRDMQNDDIQDMKWIPIDRGPLIRLGTNMPARAERVCKAGLDPHTGTGSSNSTPSESGGEVSDVILYFGIIDILQDYDISKKLEHAYKSLQVDPSSISAVDPKLYSKRFRDFIHRIFVEDK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
