SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G09840 | AT | Annotation by Michelle Graham. TAIR10: Putative endonuclease or glycosyl hydrolase | chr5:3059027-3061970 FORWARD LENGTH=924 | SoyBase | E_val: 9.00E-35 | ISS |
| GO:0006606 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into nucleus | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| UniRef100_G7JAW3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Limkain-b1 n=1 Tax=Medicago truncatula RepID=G7JAW3_MEDTR | SoyBase | E_val: 2.00E-71 | ISS |
| UniRef100_I1JXV7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JXV7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma04g38310 not represented in the dataset |
Glyma04g38310 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g205700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g38310.2 sequence type=CDS gene model=Glyma04g38310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTTGGGCATACAAAAATCCTCCACCTGCACACCTCTTCCTGATATCGAGTGATATAGGTTTTGCTGGCTTATTACACCGGATAAGCTTGAATAATTACAATATCTTGCTCGCTGTCTCAACGAATGCTCCTGTTCTCTCCACGGAAGCAACTATAACGTGGCAATGGTATAAATTGCTTAAGGGAGAAAATCTTATTGGAAAACATTTCAACCATCCTCCGGATGATCCATATGGTTCTTGGTATGGAAACTTTAGGGTGCCCCTTGAAAACCCATTCCCAGCCAAAACTAAACCAGATTCCTTAAAAATGAGTTCTAAAGGCTCATCTGATGATGACATTGTTGGGTCTGAGGATGCGAGTCGTAAAAGTCAGGAAAGATACACAACTTCAATGAATCGCTCTGCTGGAAATGATCAGACAACAGTGGATGACATTGGTACTGCAAACTATGAATCTGGAAATTTTAGAGCAAGGGACAAATGTGTGAATCCAACTAGAAAGGAGGTTGATGATGTTTGTCACAGCCCATATGCTTTTCAAGTTGATGACTGTCTGGTTGATAAAAAAACTGGTGGAAGTGATGAAACATATAGGAAAGGTCCAACATTCTTTGGCTGGATCAGAAGCTGGTGGCAATTTTGGAAAGGCAATGCAAAATCTGGTGATTCAACTGCTCATCAGAACAAGGTGGTTAATCATTTTGAGGATTCTAACTCATCTGAACTGGTAGACCAGACAGTCCAGACTGTTAGTGATTTTGAAGATAAGTCATCAGAACTGGACCAGAATGCTATTTGTTCTGGAAAGCCTGAGTTGTTTTCTAGCAGTTCCGTTTGGGATGACATGGAATCTTTTATTTTCACCCGCAGAGGATCAGTTATTGTTTACGAGTCAAAAAACAGGGAGGATATGGCACGTAAATTACGGAAGAATGGACCCCCAGTTTTTAGATCTCTGTCTAAAAAAGATATCCTTCAATTGTTGGAGTTATTAATATCAGAAAAAAAGTGGTTGGAGGAAACCCCCACCCAAACATTTCCTTTTCAGTTTGACTCAGTGAAATATATAGTGAGGTTATATGGGTCTAGATATGATATGTTAAAAGATTGTGAGAAACTTGTAAGGGAGATATTGAGGGAACACCCAGATGGTTTTAGAATCAGTTCTTTTCCAAGATTTTTTGTTGTTAGGTATGGCTATCATCTTGATTTAGAGGAGCTTGGTTACCGAAAGTTGACAACCTTACTACAGATGATGTCGGGAGTTAAAGTAGAGTCCAATTATATTTATGAGTTAAAGTAG
>Glyma04g38310.2 sequence type=predicted peptide gene model=Glyma04g38310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFWAYKNPPPAHLFLISSDIGFAGLLHRISLNNYNILLAVSTNAPVLSTEATITWQWYKLLKGENLIGKHFNHPPDDPYGSWYGNFRVPLENPFPAKTKPDSLKMSSKGSSDDDIVGSEDASRKSQERYTTSMNRSAGNDQTTVDDIGTANYESGNFRARDKCVNPTRKEVDDVCHSPYAFQVDDCLVDKKTGGSDETYRKGPTFFGWIRSWWQFWKGNAKSGDSTAHQNKVVNHFEDSNSSELVDQTVQTVSDFEDKSSELDQNAICSGKPELFSSSSVWDDMESFIFTRRGSVIVYESKNREDMARKLRKNGPPVFRSLSKKDILQLLELLISEKKWLEETPTQTFPFQFDSVKYIVRLYGSRYDMLKDCEKLVREILREHPDGFRISSFPRFFVVRYGYHLDLEELGYRKLTTLLQMMSGVKVESNYIYELK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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