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Report for Sequence Feature Glyma04g38280

Feature Type:gene_model
Chromosome:Gm04
Start:44684357
stop:44686187
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g38280
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G07620AT Annotation by Michelle Graham. TAIR10: Exostosin family protein | chr3:2433267-2434988 REVERSE LENGTH=470 SoyBaseE_val: 1.00E-138ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
KOG1021 KOG Acetylglucosaminyltransferase EXT1/exostosin 1 JGI ISS
PTHR11062Panther EXOSTOSIN (HEPARAN SULFATE GLYCOSYLTRANSFERASE)-RELATED JGI ISS
PTHR11062:SF1Panther EXOSTOSIN RELATED JGI ISS
PF03016PFAM Exostosin family JGI ISS
UniRef100_B9SF22UniRef Annotation by Michelle Graham. Most informative UniRef hit: Catalytic, putative n=1 Tax=Ricinus communis RepID=B9SF22_RICCO SoyBaseE_val: 0ISS
UniRef100_UPI0002339D94UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339D94 related cluster n=1 Tax=unknown RepID=UPI0002339D94 SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g38280
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g38280
ParalogEvidenceComments
Glyma06g16770 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g38280 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g205500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g38280
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g38280
>Glyma04g38280.2   sequence type=CDS   gene model=Glyma04g38280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CACAAGTACACCAAGTTAGGAAGAATTGAAGCAAGATTGGCTAAAGCAAGGTATTCCATCAGAGAAGCTAGCAAAATTCGAAATTTGACATCAAACCTCCAAGATCCAGACTATGTTCCTCAAGGTTCAATTTACAGAAACGTCAATGCCTTTCAGAGGAGTTACCTAGAGATGGAAAAGGTTTTCAAGATTTTTGTGTATGAAGAAGGGGAGCCACCGTTGTTCCACAATGGTCTAAGCAAAGACATATATGCCACTGAGGGGAGATTCATACATGAAATGGAAAAGGGGAGGTACTATCGTACTTATGATCCAGATGAAGCTTTTGTGTATTATCTGCCCTTTAGTGGGGTTTATGTTGATCCCCTTGGCCTTGTTGTAAAAGACTACATACAGGTTATAGCCCATAAACATCCCTTCTGGAATCGATCCCTTGGCTATGATCACTTCATGCTCTCTTGCCACGATTGGGGTCCGCTTGTATCTAGTTACGTGGATCACTTCTACAACAATGCTATAAGGGTTCTATGCAACGCAAATGTATCTGAAGGATTCAAGCCTGCAAAGGATGTCTCATTTCCTGAGATTAAACTTATTAAGGGGGAAGTCACAAATCTACTACTCCAAAGTACATGGAAAAACAAAGACCAAGATATGCAAATCTATGAGGAACTTCCTGAGGGAATCTCTTACTACACAAAGCTTAGAAGCAGCAAGTTTTGCCTCTGCCCAAGTGGTTATGAAGTAGCTAGTCCCAGAGTAGTGAAAGCAATATTTGCAGAATGTGTGCCAGTTCTGATTTCTGACGGCTATGTTCCACCCTTTAGTGATGTTTTGAATTGGAATTCATTTTCAGTTCAAGTGGATGTGAAGGACATTCCAAATATCAAAAAGATACTCATGGGAATTTCAGAAAGGCAGTACTTGAGGATGTACAAGAGGGTGAAACAAGTGCAAAGACATTTTGTGCCTAATGAGCCCCCAAAGAGGTATGATATGTTCCATATGACTGTCCATTCCATTTGGCTCAGGAGGTTGAATATCCATATTCAAGACCAGTAA
Predicted protein sequences of Glyma04g38280
>Glyma04g38280.2   sequence type=predicted peptide   gene model=Glyma04g38280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
HKYTKLGRIEARLAKARYSIREASKIRNLTSNLQDPDYVPQGSIYRNVNAFQRSYLEMEKVFKIFVYEEGEPPLFHNGLSKDIYATEGRFIHEMEKGRYYRTYDPDEAFVYYLPFSGVYVDPLGLVVKDYIQVIAHKHPFWNRSLGYDHFMLSCHDWGPLVSSYVDHFYNNAIRVLCNANVSEGFKPAKDVSFPEIKLIKGEVTNLLLQSTWKNKDQDMQIYEELPEGISYYTKLRSSKFCLCPSGYEVASPRVVKAIFAECVPVLISDGYVPPFSDVLNWNSFSVQVDVKDIPNIKKILMGISERQYLRMYKRVKQVQRHFVPNEPPKRYDMFHMTVHSIWLRRLNIHIQDQ*






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