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Report for Sequence Feature Glyma04g38261

Feature Type:gene_model
Chromosome:Gm04
Start:44666307
stop:44670319
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g38261
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G72160AT Annotation by Michelle Graham. TAIR10: Sec14p-like phosphatidylinositol transfer family protein | chr1:27153823-27155609 REVERSE LENGTH=490 SoyBaseE_val: 1.00E-173ISS
GO:0006810GO-bp Annotation by Michelle Graham. GO Biological Process: transport SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0005215GO-mf Annotation by Michelle Graham. GO Molecular Function: transporter activity SoyBaseN/AISS
KOG1471 KOG Phosphatidylinositol transfer protein SEC14 and related proteins JGI ISS
PTHR23324Panther SEC14 RELATED PROTEIN JGI ISS
PTHR23324:SF4Panther SEC14 CYTOSOLIC FACTOR-RELATED JGI ISS
PF00650PFAM CRAL/TRIO domain JGI ISS
PF03765PFAM CRAL/TRIO, N-terminus JGI ISS
UniRef100_B9SHD9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Patellin-3, putative n=1 Tax=Ricinus communis RepID=B9SHD9_RICCO SoyBaseE_val: 0ISS
UniRef100_UPI0002339D93UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339D93 related cluster n=1 Tax=unknown RepID=UPI0002339D93 SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g38261
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g38261 not represented in the dataset
Glyma04g38261 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g38261
ParalogEvidenceComments
Glyma06g16790 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g38261 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g205300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g38261
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g38261
>Glyma04g38261.1   sequence type=CDS   gene model=Glyma04g38261   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGAGGAAGTTCCAAAGACAAGCACAACTCAAGAGGAGGTGGTGGTCTCTGACGTGGCACCTGCTGAGAAACCAGACACCACCAACGTTGTTGTTGTTCCCCTAGAGAAAGACGCACAACCACAACAAAATGAAGAAGAAACCTCGCCAGAGAAGAAGAAAGAGAACGTTACCGAAACTGAAACCGAGTCCGAGGTTTCAAAACCAAGTGGCGACGGCAACGTTCCTGAATCCGGTTCTTTCAAGGAAGAAAGCACCATTGTCTCCGACCTACCAGAGACCGAGAAAAAGGCTCTGCAAGAACTCAAACAACTTATTCAAGAAGCGCTCAACAAACACGAATTCTCCGCGGTGCCAACAAGTAACCCTCCCAAAGATGAAAAACCCGACAACAAGGAAGAACAGAACCCCGCGGAGGAAGAAGAGAAGCAACAAGTTTTTGATGCTGCTGCTGACGTGGCAGAAGCGACAGAAAAAGAAGCTGCAGAAGTTAAGGTAACCGAAACTGAGGTTGATGAAGAGAAAGTGGCGGTGTCTGCTTCTTCTGCTGATGAAGACGGAGCTAAAACGGTGGAAGCTATCGAAGAAAGCGTTGTGTCTGTGACTGTTTCCGAGGAAGCAAAGGTGGAAGCTGTTTCTGCTTCACCCGAAGAAGTTTCCATCTGGGGTGTTCCTCTTCTTGCTGACGAGAGGAGCGACGTGATTCTCTTAAAGTTTCTGCGTGCTCGGGACTTCAAGGTGAAGGAGGCATTCGCGATGATAAAGGGCACGATTCGGTGGAGGAAGGAGTTCAAGATGGAGGAGTTGTTATTGGAGGATTTAGGTGATGATTTGGAGAAAGCGGTGTACATGCATGGATTCGACAAGGAGGGTCACCCCGTGTGTTACAATATCTATGGGGAGTTTCAGAACAAGGAGTTGTACAAGAAGAGTTTCTCTGATGAGGAGAAGAGGTATAGATTTCTCAGGTGGAGGATTCAGTTCCTGGAGAAGAGTATCAGGAAGCTGGACTTTAACCCTGGTGGGATAAGCACCATTGTTCAGGTTAATGATCTCAAGAATTCTCCTGGCCCTGCCAAGTGGGAGCTTAGACAGGCTACCAAACAGGCCCTCCAGCTGCTTCAGGATAACTATCCTGAGTTTGTAGCCAAACAGGTGTTTATCAATGTGCCTTGGTGGTACTTGGCAGTGAACAGGATGATAAGCCCTTTTCTTACTCAGAGAACCAAAAGCAAGTTTGTCTTTGCTGGACCTTCTAAATCAGCTGAGACCCTTTTGAGATACATTGCTGCGGAGCAACTTCCGGTCAAGTATGGGGGACTAAGCAAAGATGGCGAGTTCGGAATTTCCGATGCTGTTACAGAAATTACAGTGAGGCCAGCAGCAAAACATACGGTAGAGTTTCCAGTTACTGAGAACTCTCTACTCTCTTGGGAGCTCAGAGTAATAGGGTGGGATGTAAGCTATGGTGCAGAGTTTGTGCCAACTTCAGAGGGAAGTTATACTGTGATCATCCAGAAGGCTAGAAAGGTTGCTTCATCAGAAGAACCGGTGCTTTGCAACAACTACAAAATTGGTGAACCTGGGAAAGTGGTTCTCACCATTGACAATCAAAGCTCTAAGAAGAAGAAGCTCTTGTACCGCTTAAAGGTCAAGCCTTCTTCTGACTGA
Predicted protein sequences of Glyma04g38261
>Glyma04g38261.1   sequence type=predicted peptide   gene model=Glyma04g38261   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEEVPKTSTTQEEVVVSDVAPAEKPDTTNVVVVPLEKDAQPQQNEEETSPEKKKENVTETETESEVSKPSGDGNVPESGSFKEESTIVSDLPETEKKALQELKQLIQEALNKHEFSAVPTSNPPKDEKPDNKEEQNPAEEEEKQQVFDAAADVAEATEKEAAEVKVTETEVDEEKVAVSASSADEDGAKTVEAIEESVVSVTVSEEAKVEAVSASPEEVSIWGVPLLADERSDVILLKFLRARDFKVKEAFAMIKGTIRWRKEFKMEELLLEDLGDDLEKAVYMHGFDKEGHPVCYNIYGEFQNKELYKKSFSDEEKRYRFLRWRIQFLEKSIRKLDFNPGGISTIVQVNDLKNSPGPAKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTKSKFVFAGPSKSAETLLRYIAAEQLPVKYGGLSKDGEFGISDAVTEITVRPAAKHTVEFPVTENSLLSWELRVIGWDVSYGAEFVPTSEGSYTVIIQKARKVASSEEPVLCNNYKIGEPGKVVLTIDNQSSKKKKLLYRLKVKPSSD*






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