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Report for Sequence Feature Glyma04g38190

Feature Type:gene_model
Chromosome:Gm04
Start:44589289
stop:44604338
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g38190
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G23630AT Annotation by Michelle Graham. TAIR10: phosphate deficiency response 2 | chr5:7960756-7967644 REVERSE LENGTH=1179 SoyBaseE_val: 0ISS
GO:0006812GO-bp Annotation by Michelle Graham. GO Biological Process: cation transport SoyBaseN/AISS
GO:0006875GO-bp Annotation by Michelle Graham. GO Biological Process: cellular metal ion homeostasis SoyBaseN/AISS
GO:0006888GO-bp Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport SoyBaseN/AISS
GO:0006891GO-bp Annotation by Michelle Graham. GO Biological Process: intra-Golgi vesicle-mediated transport SoyBaseN/AISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0009846GO-bp Annotation by Michelle Graham. GO Biological Process: pollen germination SoyBaseN/AISS
GO:0010073GO-bp Annotation by Michelle Graham. GO Biological Process: meristem maintenance SoyBaseN/AISS
GO:0010152GO-bp Annotation by Michelle Graham. GO Biological Process: pollen maturation SoyBaseN/AISS
GO:0010413GO-bp Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process SoyBaseN/AISS
GO:0016036GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation SoyBaseN/AISS
GO:0045492GO-bp Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process SoyBaseN/AISS
GO:0048867GO-bp Annotation by Michelle Graham. GO Biological Process: stem cell fate determination SoyBaseN/AISS
GO:0005783GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0015662GO-mf Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism SoyBaseN/AISS
GO:0016887GO-mf Annotation by Michelle Graham. GO Molecular Function: ATPase activity SoyBaseN/AISS
GO:0019829GO-mf Annotation by Michelle Graham. GO Molecular Function: cation-transporting ATPase activity SoyBaseN/AISS
GO:0046872GO-mf Annotation by Michelle Graham. GO Molecular Function: metal ion binding SoyBaseN/AISS
KOG0209 KOG P-type ATPase JGI ISS
PTHR24093Panther FAMILY NOT NAMED JGI ISS
PTHR24093:SF48Panther SUBFAMILY NOT NAMED JGI ISS
PF00122PFAM E1-E2 ATPase JGI ISS
PF00702PFAM haloacid dehalogenase-like hydrolase JGI ISS
UniRef100_B9RHM6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cation-transporting atpase 13a1, putative n=1 Tax=Ricinus communis RepID=B9RHM6_RICCO SoyBaseE_val: 0ISS
UniRef100_I1JXU9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JXU9_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g38190
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g38190
ParalogEvidenceComments
Glyma06g16860 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g38190 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g204800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g38190
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g38190
>Glyma04g38190.1   sequence type=CDS   gene model=Glyma04g38190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGAGTTTCCACGTCGGCGGCAAGGTCGTGGACCAAGTCGATTTGCTGAGGAAGAAGCGATGGCCCTGGCGCCTTGACGTTTGGCCCTTCGCTATTCTCTACGGCGCGTGGCTTTCCACGATTCTTCCCAGCCTCGACTTCGTCGACGCCGCCATTGTCTTCGGCGCCCTCGTCTCGCTTCACATCCTGGTTTTTCTCTTCACCGGTTGGTCCGTTGATTTCAAATGCTTCGCCCATTATAGCAAGGTTAAGAATATTGATCAGGCAGATTCGTGCAAGATTACTCCGGCGAAGTTCTCGGGTTCGAAAGAAGTTGTGCCGCTTCATTCACGGAAAAGTTCTGCAGCTTCTTCATCAGCGGTGGATTTGGAAGAGAACTACTTCGATTTTAGAAAGCAATGTTTTGTGCATTCAAAGGAGAAGGGGACCTTTTGCAAGCTTTCCTACCCTACTAAAGAAACATTTGGATATTATCTCAAGTGTAGTGGCCATGGCTCTGAAGCTAAAGTTCTTGCTGCTACTGAGAAATGGGGGCGGAATGTATTTGATTATCCTCAGCCAACATTTCAGAAATTGATGAAAGAGCACTGCATGGAACCTTTTTTCGTATTTCAGGTTTTCTGTGTGGGTCTCTGGTGTTTAGATGAATATTGGTATTACAGTTTGTTCACTCTATTTATGCTGTTTATGTTTGAGTCAACCATGGCAAAAAGTCGGTTGAAAACTCTTACCGAGTTAAGACGTGTTAGAGTGGATAGTCAGATCCTAATGGTTCATCGCTGTGGCAAGTGGGTAAAACTCTCTGGTACAGATCTTTTGCCTGGTGATGTTGTCTCCATAGGTCGCTCTTCTGGTCAGAATGGGGAGGAGAAGTCTGTACCAGCAGACATGCTTCTATTGGCTGGAAGTGTGATTGTGAATGAAGCTATTCTGACAGGCGAGTCTACTCCTCAATGGAAGATTTCAATCGCGGGTAGGGCGATGGAGGAGACATTGTCTGCAAAGCGAGATAAAAACCATGTGTTATTTGGTGGAACTAAAATATTGCAGCACACTCCAGATAAGAGTTTTCCTCTAAAAACACCTGATGGTGGCTGCTTGGCTGTTATCTTGAGAACGGGGTTTGAAACAAGTCAAGGAAAGTTGATGCGAACAATCTTATTCTCTACAGAAAGGGTGACTGCTAATAGCTGGGAAAGTGGATTCTTCATTTTATTCCTGGTTGTATTTGCCCTTATTGCTGCTGGCTATGTGCTTGTTAAGGGGTTAGAAGATCCCACAAGGAGCAAGTATAAACTTATACTAAGTTGTTCACTTATTGTTACTTCTGTGATACCTCCTGAGTTACCAATGGAATTATCAATAGCTGTTAATACTTCTCTGATTGCACTGGCACGGCGTGGGATTTTTTGCACAGAGCCTTTTCGAATACCATTTGCTGGAAAGGTTGATATATGCTGTTTTGACAAGACAGGGACACTTACATCTGATGACATGGAATTTTCTGGAGTTGTTGGGTTGAATGGAACTACAGATTTGGAATCTGATACGAGTAAAGTGCCTGTGCGAACAGTGGAAATCCTGGCTTCTTGCCATGCATTGGTATTTGTTGAAAATAAGCTGGTTGGTGATCCTCTTGAGAAGGCTGCACTTAGGGGAATTGACTGGAGTTATAAATCTGATGACAAGGCTGTTCCAAAAAAGGGAACTGGCCAACCTGTCCAAATTGTACATCGGTACCATTTTGCATCTCACTTAAAACGAATGGCAGTTGTTGTTCGCATTCAGGAGGAATTTTTTGCCTTTGTGAAGGGTGCCCCTGAAGTTATACAAGATAGGCTCATTGATATACCACCATCATATGTTGAGACCTACAAAAAATACACACGTCAAGGGTCTCGTGTTCTTGCTCTGGCTTACAAGTCTCTTGATGACATGACAGTCAGTGAAGCTAGAAGCTTGGATAGGGATATAGTGGAGAGTAGACTTACTTTTGCAGGTTTTGTGGTATTTAATTGTCCCATAAGATCAGATTCAGCCACTGTTTTATCTGAATTGAAAGAATCCTCACATGACTTAGTGATGATTACCGGTGACCAAGCTTTGACAGCTTGCCATGTTGCTAGCCAAGTTCATATTATATCAAAACCAACATTAATCCTTGGCCCGACACGAAATGGTGAGGGATATAATTGGGTGTCCCCTGATGAGACTGAAAACATTCACTACAGTGAGAAAGAGGTCGAGTCTTTATCAGAAACTCATGATCTCTGTATTGGGGGTGATTGCATTGAGATGTTGCAACAGACATCAGCTCATCTTCGGGTCATTCCTTATGTTAAGGTTTTTGCTAGAGTTGCTCCTGAGCAAAAAGAACTTATCATGACCACTTTCAAAACGGTGGGACGGTTAACTTTGATGTGTGGGGATGGAACCAATGATGTTGGAGCTTTGAAACAGGCCCATGTAGGAATTGCTCTTCTGAATGCATTGCCTCCAACTCAAAGTGGAAACTCCTCTTCAGATTCATCTAAGGAAGAAGGTTCAAAATCTGGCAAGCAAAAGAAATCTAAGCCTGCTAGTGAAGGCACTTCAAAAGCCAAAGTTGCTTCAAAATCAGATTCCACTAGTCACTCATCTGGTAACCGTCATCAGGCAGCTGTTGAGATGCAACGGCAGAAGCTTAAAAAGATGATGGACGAGCTTAATGAGGAGGGAGATGGTCGTGCACCCATTGTCAAGCTTGGGGATGCCTCAATGGCATCTCCATTCACTGCTAAGCATGCATCTGTTGCTCCCACCACTGATATAATTCGTCAAGGTAGGAGTACCCTAGTGACAACCCTCCAGATGTTTAAAATTCTGGGTCTCAATTGTCTTGCTACTGCATATGTGTTGAGTGTTATGTATCTAGATGGTGTCAAGCTAGGTGACATACAAGCCACAATAAGTGGTGTCTTCACTGCTGCATTTTTCCTCTTTATCTCACATGCACGCCCTCTTCCCACTCTTTCTGCTGAACGTCCTCACCCCAACATCTTCTGTGCTTATGTTTTCCTTTCCCTCCTGGGACAATTTTCTATTCACCTGCTTTTCCTGATCTCGTCTGTGAAAGAAGCTGAAAAACACATGCCAGATGAATGCATTGAGCCTGATGCAGATTTTCATCCCAACCTGGTGAATACTGTTTCCTATATGGTGAGCATGATGCTTCAGGTGGCCACATTTGCTGTGAACTATATGGGCCATCCCTTCAACCAGAGTATTTCGGAAAACAGGCCGTTCCGGTATGCACTTGTTGCTGCTGTTGTTTTCTTTACTGTGATCACATCAGATCTCTTCAGGGACTTGAATGACTGGTTGAAGTTAGTGCCATTGCCAGCGGGATTAAGGGATAAACTATTGCTTTGGGCGTTTCTAATGTTTTTGGTTTGCTATTCGTGGGAGAGACTGTTGAGGTGGGCCTTCCCTGGCAAGATCCCAGCTTGGAAGAAGCGACAACGGCTTGCTGTATCTAATTTAGAAAAGAAACAGGTCTAA
Predicted protein sequences of Glyma04g38190
>Glyma04g38190.1   sequence type=predicted peptide   gene model=Glyma04g38190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSFHVGGKVVDQVDLLRKKRWPWRLDVWPFAILYGAWLSTILPSLDFVDAAIVFGALVSLHILVFLFTGWSVDFKCFAHYSKVKNIDQADSCKITPAKFSGSKEVVPLHSRKSSAASSSAVDLEENYFDFRKQCFVHSKEKGTFCKLSYPTKETFGYYLKCSGHGSEAKVLAATEKWGRNVFDYPQPTFQKLMKEHCMEPFFVFQVFCVGLWCLDEYWYYSLFTLFMLFMFESTMAKSRLKTLTELRRVRVDSQILMVHRCGKWVKLSGTDLLPGDVVSIGRSSGQNGEEKSVPADMLLLAGSVIVNEAILTGESTPQWKISIAGRAMEETLSAKRDKNHVLFGGTKILQHTPDKSFPLKTPDGGCLAVILRTGFETSQGKLMRTILFSTERVTANSWESGFFILFLVVFALIAAGYVLVKGLEDPTRSKYKLILSCSLIVTSVIPPELPMELSIAVNTSLIALARRGIFCTEPFRIPFAGKVDICCFDKTGTLTSDDMEFSGVVGLNGTTDLESDTSKVPVRTVEILASCHALVFVENKLVGDPLEKAALRGIDWSYKSDDKAVPKKGTGQPVQIVHRYHFASHLKRMAVVVRIQEEFFAFVKGAPEVIQDRLIDIPPSYVETYKKYTRQGSRVLALAYKSLDDMTVSEARSLDRDIVESRLTFAGFVVFNCPIRSDSATVLSELKESSHDLVMITGDQALTACHVASQVHIISKPTLILGPTRNGEGYNWVSPDETENIHYSEKEVESLSETHDLCIGGDCIEMLQQTSAHLRVIPYVKVFARVAPEQKELIMTTFKTVGRLTLMCGDGTNDVGALKQAHVGIALLNALPPTQSGNSSSDSSKEEGSKSGKQKKSKPASEGTSKAKVASKSDSTSHSSGNRHQAAVEMQRQKLKKMMDELNEEGDGRAPIVKLGDASMASPFTAKHASVAPTTDIIRQGRSTLVTTLQMFKILGLNCLATAYVLSVMYLDGVKLGDIQATISGVFTAAFFLFISHARPLPTLSAERPHPNIFCAYVFLSLLGQFSIHLLFLISSVKEAEKHMPDECIEPDADFHPNLVNTVSYMVSMMLQVATFAVNYMGHPFNQSISENRPFRYALVAAVVFFTVITSDLFRDLNDWLKLVPLPAGLRDKLLLWAFLMFLVCYSWERLLRWAFPGKIPAWKKRQRLAVSNLEKKQV*






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