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Report for Sequence Feature Glyma04g38120

Feature Type:gene_model
Chromosome:Gm04
Start:44511504
stop:44525025
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G08500AT Annotation by Michelle Graham. TAIR10: Transmembrane CLPTM1 family protein | chr5:2748261-2751590 FORWARD LENGTH=590 SoyBaseE_val: 0ISS
GO:0007062GO-bp Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion SoyBaseN/AISS
GO:0007129GO-bp Annotation by Michelle Graham. GO Biological Process: synapsis SoyBaseN/AISS
GO:0007131GO-bp Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0010332GO-bp Annotation by Michelle Graham. GO Biological Process: response to gamma radiation SoyBaseN/AISS
GO:0032204GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of telomere maintenance SoyBaseN/AISS
GO:0032504GO-bp Annotation by Michelle Graham. GO Biological Process: multicellular organism reproduction SoyBaseN/AISS
GO:0033044GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization SoyBaseN/AISS
GO:0042138GO-bp Annotation by Michelle Graham. GO Biological Process: meiotic DNA double-strand break formation SoyBaseN/AISS
GO:0043247GO-bp Annotation by Michelle Graham. GO Biological Process: telomere maintenance in response to DNA damage SoyBaseN/AISS
GO:0045132GO-bp Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation SoyBaseN/AISS
KOG2489 KOG Transmembrane protein JGI ISS
PTHR21347Panther CLEFT LIP AND PALATE ASSOCIATED TRANSMEMBRANE PROTEIN-RELATED JGI ISS
PF05602PFAM Cleft lip and palate transmembrane protein 1 (CLPTM1) JGI ISS
UniRef100_G7J2P6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cleft lip and palate transmembrane protein-like protein n=1 Tax=Medicago truncatula RepID=G7J2P6_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1JXT8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JXT8_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma06g16940 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g203800 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma04g38120.1   sequence type=CDS   gene model=Glyma04g38120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGCCGCCTGCGCCAGCAGTTGAAGGCGGCCAGGCGCCGCAAGGGCGGCAGCAACAGCCGCAAGGAGGGTTTGGCCTCTCCGGAATCATACGCATGGCAGTTTTCTGGTACTTCGCCTCCAAATTCTTTTCCCCCAAAAAACCTACCGAACCTTCCGCTCTCATCTCCAATCTCTATCAGAAGGCACAGCCTCTGGATATGTGGCTTTATCTTTCCGAGTACGAGAAGTTCAATGACTTTGGTAGTGAAAGTTCTCTTGTATGGCATGAAACCAATATTCCGTATGCCGTTTGGGGACCTGAGAGTACCAGGACTCTAACTTTGAAGTATCATCCGTCTGAGTCTTTGAAGCATAATGGGAGTCTATATGCTCATGTTTTCTTTGCACACTCTGGCTTTTCGCCTGACCCAAGTGATCCAGAATACCAGCCTCAAGCAGCATTTGGAAGGACGCATCCTGTTGTGATGTACTTGCCCAAGTCACAAGCAGATAAAAAGAAAAGTCTGTTGGGAGGTTCACCAGATTCTAGTGAGGCTCAAGTGACATCCAAGGTGGTTGATGAATCTGAAGATGATGATTCTAATGATGATGGTCCTGTGGAGTGGGCTTCATATTGGAAACCAAATATAACAATAAACTTGGTTGCTGACTTCACTCAGTACCCAAAAACAGGTGTAGCACCAAACATTGCTCCATACTTGAACATCGATCCTTTTACTGGGAACTACTATCCAATTGTTTATTTCAATGAGTTCTGGTTACTCAGGGATAAGCTGATACCTTTAAACGAGACAGTGACTGAATTATCACTTAACCTGGAAGTTGGTCCCATTAGTATGACAAAGTGGCAGTTATTCCTGCAGATTGACCAGTCCTTCCAGATTCACCGTAGTTATGGAAGCATGCTTGAAGGCGAGGCTGATGAACTCAAGAGGGTATTCTTGGAAGGGAATCCTTACCTCCTGGCAATTACCATGGTTGTTTCTCTTCTTCATTCAGTCTTTGACTTCTTGGCTTTCAAGAATGACATCCAATTTTGGAACAAAAATAAATCTATGGAAGGACTCTCTGCAAAGACCGTTGTTGTGAGCTTTGCTTGTCAGCTTATCATCTTCCTTTATCTACTTGACAATGACACCTCTTGGATGATTCTTGCAAGCTCTGGAATTGGTTGTGTTATTGAGTTTTGGAAAATTGGTAAAGCCATGCGCATAGAGATTGATAGGACAGGAAGGATACCTATGTTGAAGCTCCGCGATCGAGAATCATACGTACGGAATAAGACAAAGGAATATGATGATATTGCTATGAAGTATTTGTTCTATGTTTTATTTCTCCTTGTTGCTGGCTTTTCTGTTTACTCACTGATGTATGAGCGTCACAAGAGCTGGTATTCTTGGATTTTGTCTTCGCTCACAAGTTGTGTATACATGTTTGGTTTTATTATGATGTGCCCTCAATTGTTCATCAACTACAAGCTCAAATCTGTTGCTCATCTACCTTGGAGGCAAATGACTTACAAGTTTCTCAACACCATAATTGATGACCTTTTTGCCTTTGTCATTAAAATGCCAACACTCCATCGGCTTTCTGTCTTCCGTGATGATCTTATCTTTGTCATATACTTATACCAGAGGTGGATTTATAAAGTGGACAAGAAACGTGTTAACGAATTTGGTTTTGGAGGTGAGGATGATCAGGCTGTGGCAGAGACAGACGCTGCAAAGGAAGAAGAGAAGAAAACTAATTGA

>Glyma04g38120.1   sequence type=predicted peptide   gene model=Glyma04g38120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPPAPAVEGGQAPQGRQQQPQGGFGLSGIIRMAVFWYFASKFFSPKKPTEPSALISNLYQKAQPLDMWLYLSEYEKFNDFGSESSLVWHETNIPYAVWGPESTRTLTLKYHPSESLKHNGSLYAHVFFAHSGFSPDPSDPEYQPQAAFGRTHPVVMYLPKSQADKKKSLLGGSPDSSEAQVTSKVVDESEDDDSNDDGPVEWASYWKPNITINLVADFTQYPKTGVAPNIAPYLNIDPFTGNYYPIVYFNEFWLLRDKLIPLNETVTELSLNLEVGPISMTKWQLFLQIDQSFQIHRSYGSMLEGEADELKRVFLEGNPYLLAITMVVSLLHSVFDFLAFKNDIQFWNKNKSMEGLSAKTVVVSFACQLIIFLYLLDNDTSWMILASSGIGCVIEFWKIGKAMRIEIDRTGRIPMLKLRDRESYVRNKTKEYDDIAMKYLFYVLFLLVAGFSVYSLMYERHKSWYSWILSSLTSCVYMFGFIMMCPQLFINYKLKSVAHLPWRQMTYKFLNTIIDDLFAFVIKMPTLHRLSVFRDDLIFVIYLYQRWIYKVDKKRVNEFGFGGEDDQAVAETDAAKEEEKKTN*







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