Report for Sequence Feature Glyma04g38120
Feature Type: gene_model
Chromosome: Gm04
Start: 44511504
stop: 44525025
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g38120
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G08500 AT
Annotation by Michelle Graham. TAIR10: Transmembrane CLPTM1 family protein | chr5:2748261-2751590 FORWARD LENGTH=590
SoyBase E_val: 0 ISS
GO:0007062 GO-bp
Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion
SoyBase N/A ISS
GO:0007129 GO-bp
Annotation by Michelle Graham. GO Biological Process: synapsis
SoyBase N/A ISS
GO:0007131 GO-bp
Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination
SoyBase N/A ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0010332 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to gamma radiation
SoyBase N/A ISS
GO:0032204 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of telomere maintenance
SoyBase N/A ISS
GO:0032504 GO-bp
Annotation by Michelle Graham. GO Biological Process: multicellular organism reproduction
SoyBase N/A ISS
GO:0033044 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization
SoyBase N/A ISS
GO:0042138 GO-bp
Annotation by Michelle Graham. GO Biological Process: meiotic DNA double-strand break formation
SoyBase N/A ISS
GO:0043247 GO-bp
Annotation by Michelle Graham. GO Biological Process: telomere maintenance in response to DNA damage
SoyBase N/A ISS
GO:0045132 GO-bp
Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation
SoyBase N/A ISS
KOG2489
KOG
Transmembrane protein
JGI ISS
PTHR21347 Panther
CLEFT LIP AND PALATE ASSOCIATED TRANSMEMBRANE PROTEIN-RELATED
JGI ISS
PF05602 PFAM
Cleft lip and palate transmembrane protein 1 (CLPTM1)
JGI ISS
UniRef100_G7J2P6 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Cleft lip and palate transmembrane protein-like protein n=1 Tax=Medicago truncatula RepID=G7J2P6_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1JXT8 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JXT8_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma04g38120
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma04g38120
Paralog Evidence Comments
Glyma06g16940 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g38120 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g203800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g38120
Coding sequences of Glyma04g38120
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g38120.1 sequence type=CDS gene model=Glyma04g38120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCGCCGCCTGCGCCAGCAGTTGAAGGCGGCCAGGCGCCGCAAGGGCGGCAGCAACAGCCGCAAGGAGGGTTTGGCCTCTCCGGAATCATACGCATGGCAGTTTTCTGGTACTTCGCCTCCAAATTCTTTTCCCCCAAAAAACCTACCGAACCTTCCGCTCTCATCTCCAATCTCTATCAGAAGGCACAGCCTCTGGATATGTGGCTTTATCTTTCCGAGTACGAGAAGTTCAATGACTTTGGTAGTGAAAGTTCTCTTGTATGGCATGAAACCAATATTCCGTATGCCGTTTGGGGACCTGAGAGTACCAGGACTCTAACTTTGAAGTATCATCCGTCTGAGTCTTTGAAGCATAATGGGAGTCTATATGCTCATGTTTTCTTTGCACACTCTGGCTTTTCGCCTGACCCAAGTGATCCAGAATACCAGCCTCAAGCAGCATTTGGAAGGACGCATCCTGTTGTGATGTACTTGCCCAAGTCACAAGCAGATAAAAAGAAAAGTCTGTTGGGAGGTTCACCAGATTCTAGTGAGGCTCAAGTGACATCCAAGGTGGTTGATGAATCTGAAGATGATGATTCTAATGATGATGGTCCTGTGGAGTGGGCTTCATATTGGAAACCAAATATAACAATAAACTTGGTTGCTGACTTCACTCAGTACCCAAAAACAGGTGTAGCACCAAACATTGCTCCATACTTGAACATCGATCCTTTTACTGGGAACTACTATCCAATTGTTTATTTCAATGAGTTCTGGTTACTCAGGGATAAGCTGATACCTTTAAACGAGACAGTGACTGAATTATCACTTAACCTGGAAGTTGGTCCCATTAGTATGACAAAGTGGCAGTTATTCCTGCAGATTGACCAGTCCTTCCAGATTCACCGTAGTTATGGAAGCATGCTTGAAGGCGAGGCTGATGAACTCAAGAGGGTATTCTTGGAAGGGAATCCTTACCTCCTGGCAATTACCATGGTTGTTTCTCTTCTTCATTCAGTCTTTGACTTCTTGGCTTTCAAGAATGACATCCAATTTTGGAACAAAAATAAATCTATGGAAGGACTCTCTGCAAAGACCGTTGTTGTGAGCTTTGCTTGTCAGCTTATCATCTTCCTTTATCTACTTGACAATGACACCTCTTGGATGATTCTTGCAAGCTCTGGAATTGGTTGTGTTATTGAGTTTTGGAAAATTGGTAAAGCCATGCGCATAGAGATTGATAGGACAGGAAGGATACCTATGTTGAAGCTCCGCGATCGAGAATCATACGTACGGAATAAGACAAAGGAATATGATGATATTGCTATGAAGTATTTGTTCTATGTTTTATTTCTCCTTGTTGCTGGCTTTTCTGTTTACTCACTGATGTATGAGCGTCACAAGAGCTGGTATTCTTGGATTTTGTCTTCGCTCACAAGTTGTGTATACATGTTTGGTTTTATTATGATGTGCCCTCAATTGTTCATCAACTACAAGCTCAAATCTGTTGCTCATCTACCTTGGAGGCAAATGACTTACAAGTTTCTCAACACCATAATTGATGACCTTTTTGCCTTTGTCATTAAAATGCCAACACTCCATCGGCTTTCTGTCTTCCGTGATGATCTTATCTTTGTCATATACTTATACCAGAGGTGGATTTATAAAGTGGACAAGAAACGTGTTAACGAATTTGGTTTTGGAGGTGAGGATGATCAGGCTGTGGCAGAGACAGACGCTGCAAAGGAAGAAGAGAAGAAAACTAATTGA
Predicted protein sequences of Glyma04g38120
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g38120.1 sequence type=predicted peptide gene model=Glyma04g38120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAPPAPAVEGGQAPQGRQQQPQGGFGLSGIIRMAVFWYFASKFFSPKKPTEPSALISNLYQKAQPLDMWLYLSEYEKFNDFGSESSLVWHETNIPYAVWGPESTRTLTLKYHPSESLKHNGSLYAHVFFAHSGFSPDPSDPEYQPQAAFGRTHPVVMYLPKSQADKKKSLLGGSPDSSEAQVTSKVVDESEDDDSNDDGPVEWASYWKPNITINLVADFTQYPKTGVAPNIAPYLNIDPFTGNYYPIVYFNEFWLLRDKLIPLNETVTELSLNLEVGPISMTKWQLFLQIDQSFQIHRSYGSMLEGEADELKRVFLEGNPYLLAITMVVSLLHSVFDFLAFKNDIQFWNKNKSMEGLSAKTVVVSFACQLIIFLYLLDNDTSWMILASSGIGCVIEFWKIGKAMRIEIDRTGRIPMLKLRDRESYVRNKTKEYDDIAMKYLFYVLFLLVAGFSVYSLMYERHKSWYSWILSSLTSCVYMFGFIMMCPQLFINYKLKSVAHLPWRQMTYKFLNTIIDDLFAFVIKMPTLHRLSVFRDDLIFVIYLYQRWIYKVDKKRVNEFGFGGEDDQAVAETDAAKEEEKKTN*