Report for Sequence Feature Glyma04g38110
Feature Type: gene_model
Chromosome: Gm04
Start: 44506920
stop: 44509246
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g38110
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G08490 AT
Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:2745208-2747757 REVERSE LENGTH=849
SoyBase E_val: 0 ISS
GO:0009414 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to water deprivation
SoyBase N/A ISS
GO:0009737 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus
SoyBase N/A ISS
GO:0080156 GO-bp
Annotation by Michelle Graham. GO Biological Process: mitochondrial mRNA modification
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PTHR24015 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24015:SF84 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF01535 PFAM
PPR repeat
JGI ISS
UniRef100_D7M1C9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=2 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7M1C9_ARALL
SoyBase E_val: 0 ISS
UniRef100_I1JXT7 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JXT7_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma04g38110
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma04g38110
Paralog Evidence Comments
Glyma06g16950 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g38110 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g203700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g38110
Coding sequences of Glyma04g38110
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g38110.1 sequence type=CDS gene model=Glyma04g38110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTATGCCAAGTGTGGCATGCTTCACGAGTGCCTCCAGCTGTTTGATCAGCTCAGTCACTGTGATCCTGTTGTTTGGAATATTGTTTTGTCTGGGTTTTCAGGGTCTAACAAATGTGATGATGATGTGATGAGGGTGTTTAGGATGATGCATTTGAGCGGAGAGGCTATGCCAAATTCTGTTACCGTTGCCTGTGTCCTTCCTGTTTGTGCTCATTTGGGTGACCTGGATGCTGGAAAGTGTGTGCATGGTTATATTATCAAGTCTGGTTTTGGACAAGACATGCTTGGTGGAAATGCTCTTGTGTCAATGTATGCAAAGTGTGGGCTGGTGTCTCACGATGCATATGCTGTCTTTGATAATATTGCTCACAAAGATGTTGTTTCGTGGAATGCAATGATCGCGGGCTTGGCTGAAAATGGGTTAGTGGAGGATGCGGTCTTGCTGTTCAGTTCAATGGTGAAAGGACCTACACGGCCGAATTATGCGACCGTTGCAAATATTCTTCCTCTTTGTGCTTCATATGATAAGAGTGTTGTGTACCGTTGTGGAAGGCAGATCCATTCTTATGTGCTGCAGTGGCCTGAATTGTCAGCTGATGTTTCTGTCCGTAATGCTTTGATTAGCTTCTACCTAAAAGTTGGACAGACGAGGGAAGCAGAAGTTTTGTTTTGGACCACGGATGCAAGGGATTTGGTCACTTGGAATGCTATTTTTGCAGGATATACATCAAATGGTGAATGGTTAAAAGCACTGTACCTGTTTGGTAGTTTAGTATCTCTAGAGACATTATTGCCAGATTCTGTGACTATGGTCAGCATACTTCCAGCTTGTGTGCAATTGAAAAACTTGAAGGCAGAGAAACTAATCCATGCGTATATTTTCAGACATCCTTTCCTTTTTTATGATACAGCTGTTGTAAATGCTTTAGTTAGTTTCTATGCAAAATGTGGCTATACAGAAGAAGCATATCATACTTTTTCTATGATATCCAGGAAAGATTTGATTTCATGGAATTCTATATTTGATGTCTTTGGAGAGAAGAGGCATCATTCTAGATTTCTCAGCTTGTTAGACTGTATGCTTAAACTCGGAACTATGCCTGACTCAGTTACAATATTGACCATAATCCGTTTGTGTGCCTCTCTTTTGAGAATAGAAAAGGTTAAAGAAATACATAGCTATTCAATTAGAACTGGATCTTTATTAAGTGATGCTGCACCAACAGTTGGGAATGCAATACTTGATGCATATTCCAAATGTGGAAACATGGAGTATGCTAACAAAATGTTTCAGAATCTATCAGAAAAAAGGAACCTGGTCACATGCAATTCACTGATATCTGGTTATGTAGGTTTAGGATCACATCATGATGCACATATGATATTTAGTGGGATGTCAGAGACTGACCTTACCACACGGAATCTCATGGTTCGAGTATATGCAGAAAATGATTGTCCTGAACAAGCTCTTGGATTGTGCTATGAGTTACAAGCTCGAGGGATGAAGTCCGACACAGTGACTATCATGAGCCTCCTTCCAGTATGCACGGGTCGTGCATATAAGATATTTCAATTGAGTGCTGAGAAGGATCTGGTTATGTTTACTGCTATGATTGGTGGGTATGCTATGCATGGCATGAGTGAAGAGGCACTTTGGATTTTTTCTCATATGCTCAAGTCGGGGATCCAGCCAGATCATATTATCTTTACTTCCATATTATCTGCTTGCAGTCATGCTGGCCGAGTAGATGAAGGACTGAAGATATTTTATTCAACAGAGAAACTTCATGGTATGAAACCAACTGTGGAACAGTATGCTTGTGTGGTGGATCTCCTAGCTCGAGGTGGTCGCATTAGTGAAGCATACTCTCTTTTGACCAGTTTGCCAATTGAATCTAATGCTAATCTTTTGGGGACATTGCTTGGTGCCTGCAAAACCCATCATGAAGTAGAATTGGGGCGTATTGTAGCAAACCAACTCTTCAAAATTGAAGCTGACGATATAGGAAACTACATTGTATTATCAAATTTGTACGCAGCAGATGCTAGATTGGATGGGGTAATGAAAGTTAGAAGAATGATGAGGAACAAAGATTTGAAAAAACCAGCTGGATGCAGCTGGATTGAAGTTGAGAGAACAAATAACATTTTTGTGGTTGGAGACTGTTCCCACCCCCAAAGAAGCATTATTTACAGTACACTACAAACATTGGATCAACAAGTTAAAGAACCCGCAGAGTTTTAG
Predicted protein sequences of Glyma04g38110
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g38110.1 sequence type=predicted peptide gene model=Glyma04g38110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MYAKCGMLHECLQLFDQLSHCDPVVWNIVLSGFSGSNKCDDDVMRVFRMMHLSGEAMPNSVTVACVLPVCAHLGDLDAGKCVHGYIIKSGFGQDMLGGNALVSMYAKCGLVSHDAYAVFDNIAHKDVVSWNAMIAGLAENGLVEDAVLLFSSMVKGPTRPNYATVANILPLCASYDKSVVYRCGRQIHSYVLQWPELSADVSVRNALISFYLKVGQTREAEVLFWTTDARDLVTWNAIFAGYTSNGEWLKALYLFGSLVSLETLLPDSVTMVSILPACVQLKNLKAEKLIHAYIFRHPFLFYDTAVVNALVSFYAKCGYTEEAYHTFSMISRKDLISWNSIFDVFGEKRHHSRFLSLLDCMLKLGTMPDSVTILTIIRLCASLLRIEKVKEIHSYSIRTGSLLSDAAPTVGNAILDAYSKCGNMEYANKMFQNLSEKRNLVTCNSLISGYVGLGSHHDAHMIFSGMSETDLTTRNLMVRVYAENDCPEQALGLCYELQARGMKSDTVTIMSLLPVCTGRAYKIFQLSAEKDLVMFTAMIGGYAMHGMSEEALWIFSHMLKSGIQPDHIIFTSILSACSHAGRVDEGLKIFYSTEKLHGMKPTVEQYACVVDLLARGGRISEAYSLLTSLPIESNANLLGTLLGACKTHHEVELGRIVANQLFKIEADDIGNYIVLSNLYAADARLDGVMKVRRMMRNKDLKKPAGCSWIEVERTNNIFVVGDCSHPQRSIIYSTLQTLDQQVKEPAEF*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
