Glyma04g38090 - SoyBase

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Report for Sequence Feature Glyma04g38090

Feature Type:	gene_model
Chromosome:	Gm04
Start:	44488436
stop:	44490835
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g38090

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G48910	AT	Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR) superfamily protein \| chr5:19832969-19834909 REVERSE LENGTH=646	SoyBase	E_val: 6.00E-93	ISS
GO:0007020	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule nucleation	SoyBase	N/A	ISS
GO:0009451	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA modification	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_G7J2Q3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7J2Q3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JXT5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JXT5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g38090

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g38090

Paralog	Evidence	Comments
Glyma06g16980	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g38090 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g203500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g38090

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g38090

Limit To All Plant Sequences

>Glyma04g38090.2   sequence type=CDS   gene model=Glyma04g38090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGTTACACCCAAAATTGAATCCAAAAACCCAAAATTCATTAATCTCTCCCTCCGAACCTTCATTCTCCGCTGCGCCGACTCATCGTCACCCCCCGAGACCGCCCCTTACGCCGCCGCCGTGCTCCTCCGCTTCCCCATCGCCGGCGACCCCTTCCCCTACAACGCCGTCATCCGCCACGTGGCACTCCACGCTCCCTCCCTCGCCTTCACCCTCTTCTCCCACATGCACCGAACCAATGTCCCCTTCGACCACTTCACACCCTCATTCTCAAACTCGGGTTTCACTCCAACCTCGTACGGCACCTCCGGGTCCCTCCACGTGTCCCTCAAACTGTTCAACGAAATGCCCCACCGAGATTTGTTCTCTTGGTCCTCTTTAATCTCTTGTTTCGCCAAACACGGATTCCCCGATGAATCCCTTGCGCTTTTTCAGCAAATGCAGCTTCTCGAGAGTGATATCTTACCCGATGGGGTTGTCATGTTGAGTGTGATATCCGCGGTTTCGAGCTTAGGTGCCTTGGAATTGGGTATCTGGGTTCACGCTTTTATTTCAAGGATCGGGCTTAACCTTACTGTTCCATTGGGTTCTGCACTTATTGACATGTATTCTCGATGCGGGGACATTGATCGTTCCGTTAAGGTGAATGTTGTCACGTGGACCACGCTGATTAACGGGCTTGCCGTGCATGGACGTGGTAGGGAGGCTTTGGAGGCGTTTTATGTCATGGTGGAGTCTGGTTTGAAGCCTGATCGCGTTGCGTTTATGGGTGCTTTGGTGGCTTGTAGTCATGGTGGGCTCGTGGAGGAGGGACGACATGTTTTTAGTAGCATGCGGAGTGAGTATGGTGTTGAACTGGCACTTGAGCATTATGGTTGTGTGGTTGATCTTCTTGGCCGCGCTGGCTTGGTGCTTGAAGCTTTCGAGTTTGTGGATGGTATGCGTGTTAGGCCAAATTCGGTTATTTGGAGGACCTTGCTTGGGGCGTGTGTGAATCACAATCATCTTGTGCTGGCTGAGAAGGCCAAGGAGAGGATCAAGGAGTTAGACCCTCATCATGATGGTGATTATGTGCTTTTGTCGATTGCTTATGGTGGAGTTGGTAACTGGGTTAAGAAGGAGGGTGTGAGGAATTCAATGAGGGAGAGTAGAATTGTCAAGGAGCCTGGCCTTAGTTTGGTTCACATTGATCAAGTGGCTCATGAGTTTGAATCGGGAGATAATTCTCATCCGCAATGGAAGGAGATTACAAGTTTTTTAGGTTCGGTTATTGACACTGTGAAACTTGGAGGTTACACCGTACCCCTACTACTTCCATTGTGCTGCATGACATTCAAGAGGAAGAGAAGGAGCATTGTCTGGGCTATCACAGTGAGAAATTGGCAGTGGCTTTTGTTCTTCTTTATCATAGGGATAGAAAGACCATTAGGGTCATTAAGAAGCTTAGGATATGTTATGACTGCCATAGTTTCATGA

Predicted protein sequences of Glyma04g38090

Limit To All Plant Sequences

>Glyma04g38090.2   sequence type=predicted peptide   gene model=Glyma04g38090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVTPKIESKNPKFINLSLRTFILRCADSSSPPETAPYAAAVLLRFPIAGDPFPYNAVIRHVALHAPSLAFTLFSHMHRTNVPFDHFTPSFSNSGFTPTSYGTSGSLHVSLKLFNEMPHRDLFSWSSLISCFAKHGFPDESLALFQQMQLLESDILPDGVVMLSVISAVSSLGALELGIWVHAFISRIGLNLTVPLGSALIDMYSRCGDIDRSVKVNVVTWTTLINGLAVHGRGREALEAFYVMVESGLKPDRVAFMGALVACSHGGLVEEGRHVFSSMRSEYGVELALEHYGCVVDLLGRAGLVLEAFEFVDGMRVRPNSVIWRTLLGACVNHNHLVLAEKAKERIKELDPHHDGDYVLLSIAYGGVGNWVKKEGVRNSMRESRIVKEPGLSLVHIDQVAHEFESGDNSHPQWKEITSFLGSVIDTVKLGGYTVPLLLPLCCMTFKRKRRSIVWAITVRNWQWLLFFFIIGIERPLGSLRSLGYVMTAIVS*

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