SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G47910 | AT | Annotation by Michelle Graham. TAIR10: respiratory burst oxidase homologue D | chr5:19397585-19401768 FORWARD LENGTH=921 | SoyBase | E_val: 0 | ISS |
| GO:0006952 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response | SoyBase | N/A | ISS |
| GO:0007231 | GO-bp | Annotation by Michelle Graham. GO Biological Process: osmosensory signaling pathway | SoyBase | N/A | ISS |
| GO:0009408 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to heat | SoyBase | N/A | ISS |
| GO:0009611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to wounding | SoyBase | N/A | ISS |
| GO:0033500 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate homeostasis | SoyBase | N/A | ISS |
| GO:0042744 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide catabolic process | SoyBase | N/A | ISS |
| GO:0043069 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death | SoyBase | N/A | ISS |
| GO:0050832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus | SoyBase | N/A | ISS |
| GO:0072593 | GO-bp | Annotation by Michelle Graham. GO Biological Process: reactive oxygen species metabolic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0004601 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: peroxidase activity | SoyBase | N/A | ISS |
| GO:0005506 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: iron ion binding | SoyBase | N/A | ISS |
| GO:0005509 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calcium ion binding | SoyBase | N/A | ISS |
| GO:0009055 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: electron carrier activity | SoyBase | N/A | ISS |
| GO:0016174 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: NAD(P)H oxidase activity | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0050660 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding | SoyBase | N/A | ISS |
| GO:0050664 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor | SoyBase | N/A | ISS |
| KOG0039 | KOG | Ferric reductase, NADH/NADPH oxidase and related proteins | JGI | ISS | |
| PTHR11972 | Panther | NADPH OXIDASE | JGI | ISS | |
| PTHR11972:SF5 | Panther | NADPH OXIDASE-RELATED | JGI | ISS | |
| PF01794 | PFAM | Ferric reductase like transmembrane component | JGI | ISS | |
| PF08022 | PFAM | FAD-binding domain | JGI | ISS | |
| PF08030 | PFAM | Ferric reductase NAD binding domain | JGI | ISS | |
| PF08414 | PFAM | Respiratory burst NADPH oxidase | JGI | ISS | |
| UniRef100_H2E7D4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: NADPH oxidase (Fragment) n=1 Tax=Phaseolus vulgaris RepID=H2E7D4_PHAVU | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JXT0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JXT0_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma04g38040 not represented in the dataset |
Glyma04g38040 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g17030 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g203200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g38040.1 sequence type=CDS gene model=Glyma04g38040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAACAGACGTGGTTGTCGGAGGAGCTTCTTCAGATTCACATCACCACCACCGTGACTCTGACATAGAACTCATTGCTGAAAGAGCACCTTTACCTCACAGTGGACCACTGAACAAAAGAAGAAGTTCCAAATTAAACAACACTTCTTCTGCTTCCACCTCCGCCACAGAGGAACAAGATGAAGGAGACTACGTTGAGGTCACTATGGACATCCAAGGTGACTCTGTGGCACTTCACAGTGTCAAAACTGTTAACAACGATCAAAGCGAAGATGAGAAACTGATTCTGCTTGGCAAAGGCATGGAGAAGAAAAGGTCCTTTGGTGCCTCCGTTGTGAGAAGTGCTTCCATTCGTATACAACAAGTGTCTCAGGAGCTGAAGCGTTTTGCTTCCTTGTCGAAGCAAACTGCATCTTCCAGATTGCACTATGACAGGAACAAATCCGCGGCTTCTCATGCTCTCAAGGGACTCAAGTTTATCAGCAAGACTGATGCTGGTGCAGGGTGGGTTGAGGTTGAAAGGCAGTTTGATGCTCTCACTGCTTCCACTAATGGATACCTGCATCGCTCTCTCTTTGCCAAGTGCATAGAGATGAACAAGGAGTCAGAAGCCTTTGCAGGGGAGCTTTTTGATGCGCTTTCTAGGAGGAGGGAAATTCAGGGGGATTCCATTAACAAGGCCCAGCTGAAGGACTTCTGGGACCAGATTTCTGACCAGAATTTCGATTCTAGGCTCAGAACATTCTTTGACATGGTTGATAAAGATGCGGATGGAAGAATCACTGAGGAAGAAATTAAAGAGATTATCTGCCTTAGCGCCACTACCAACAAACTTGCAAACATACAGAAGCAGGCAGAGGAATATGCGGCTTTGATCATGGAAGAACTAGACCCTGAAGACACAGGATTTATCATGGTAAACGATCTAGAGATGCTCTTGTTACATGGACCAACCCATTCTACTAGAGGAGATAGCAAGTACCTGAGCCAAATGCTAAGCTTAAAGCTTAAGCCTGTAGATGAAGACAATCCTATTAGGAGGTGGTACACAAACACCAAGTACTTCCTGCAGGACAATTGGCAAAGAACTTGGGTATTGCTGCTGTGGATTGGCGTCATGTTAGGTCTATTTGCCTACAAATTTGTGCAGTATAGGAGAGAAGATGCATATGAGGTGATGGGCCATTGTGTATGCATGGCCAAAGGTGCAGCTGAGACACTTAAATTGAACATGGCTATTATCTTGCTACCAGTTTGCAGAAACACCATCACTTGGCTAAGGAACAAGACCAAGCTTGGCATTATGGTTCCTTTTGATGACAACCTCAACTTCCACAAGTGCATAGCTGTGGCAGTAACAATCGGAGTTGGTATACATGGCATCTACCATCTTGCTTGTGACTTTCCTCGCCTTCTTGATGCAAGTAGCGAAAAGTACAAGCTCATGGAACCTTTTTTCGGAGATCAACCATCAAGTTATTGGTTTTTTGTCAAATCATGGGAAGGAGTAACAGGGATTATCATGGTTGTGCTAATGGCAATAGCCTTCACTTTAGCCACCCCTTGGTTCAGGAGAGGCAGGGTCAAGCTACCCAAACCCCTCAACAATCTCACCGGCTTCAACGCCTTCTGGTACTCACATCATCTCTTTGTCATTGTCTATGCACTGCTCATTGTGCATGGAATCAAACTTTACTTGACCAAGGAATGGTACAAGAAAACGACCTGGATGTATTTGGCTATTCCCATTATCATTTACTTATCAGAAAGATTGACTAGAGCACTCAGATCAAGCATCAAGCCTGTGAGAATATTAAAGGTGGCTGTTTATCCTGGAAATGTGTTGTCTCTTCATATGTCAAAGCCCCAGGGATTTAGATACAAGAGTGGACAATACATGTTTCTCAATTGTGCTGCTGTGTCTCCATTTGAATGGCATCCATTTTCTATAACCTCCGCCCCTGGTGATGATTACCTTAGCGTTCATATCAGAACACTTGGTGATTGGACCCGGAGTCTCAAAGTCAAGTTCTCAGAGTGTTGCCAGCCACCGGACAACGGCAAGAGTGGACTTCTAAGAGCTGAATACTTGCAAGGAGATAGAAGTCCGAGTACTCTCCCTAAAGTTCTAATTGACGGTCCGTACGGAGCACCAGCCCAAGACTACAAGCAATATGAGGTGGTTTTGCTAGTGGGGCTAGGAATTGGAGCCACCCCAATGATTAGTATACTTAAGGACATAGTGAATAACATGAAAGCCATGGAAGAGGAAGAGGAGACCAACATAGAGGAAGGAACAAATAGTGGGTTTGGTAATAAATCACCAAGAGGGTCGTCCCCACACAAGAAAAATAGCTCGAGCAACTTCAACACTAGGAGGGCCTACTTCTATTGGGTGACAAGGGAGCAAGGGTCCTTTGATTGGTTCAAAGGGGTGATGAATGAGGTGGCTGAAGAGGATCATAAGGGGGTGATTGAGCTCCACAACTATTGCACTAGTGTCTATGAAGAGGGTGATGCTCGCTCAGCTCTTATTGCTATGTTGCAATCTCTAAACCATGCCAAGAATGGCGTGGACATTGTCTCTGGCACGCGTGTAAAGTCCCACTTTGCTAAACCTAATTGGCGCGCTGTCTACAAGCGCATTGCGGTTAGTCATCCACGAGCTCGTGTTGGGGTATTTTACTGTGGGCCACCAGCGCTAACCAAAGAGCTTGGTCAGTTAGCTTCGGATTTCTCTCACAACACAAACACGAAATATGATTTCCACAAGGAAAATTTCTAA
>Glyma04g38040.1 sequence type=predicted peptide gene model=Glyma04g38040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGTDVVVGGASSDSHHHHRDSDIELIAERAPLPHSGPLNKRRSSKLNNTSSASTSATEEQDEGDYVEVTMDIQGDSVALHSVKTVNNDQSEDEKLILLGKGMEKKRSFGASVVRSASIRIQQVSQELKRFASLSKQTASSRLHYDRNKSAASHALKGLKFISKTDAGAGWVEVERQFDALTASTNGYLHRSLFAKCIEMNKESEAFAGELFDALSRRREIQGDSINKAQLKDFWDQISDQNFDSRLRTFFDMVDKDADGRITEEEIKEIICLSATTNKLANIQKQAEEYAALIMEELDPEDTGFIMVNDLEMLLLHGPTHSTRGDSKYLSQMLSLKLKPVDEDNPIRRWYTNTKYFLQDNWQRTWVLLLWIGVMLGLFAYKFVQYRREDAYEVMGHCVCMAKGAAETLKLNMAIILLPVCRNTITWLRNKTKLGIMVPFDDNLNFHKCIAVAVTIGVGIHGIYHLACDFPRLLDASSEKYKLMEPFFGDQPSSYWFFVKSWEGVTGIIMVVLMAIAFTLATPWFRRGRVKLPKPLNNLTGFNAFWYSHHLFVIVYALLIVHGIKLYLTKEWYKKTTWMYLAIPIIIYLSERLTRALRSSIKPVRILKVAVYPGNVLSLHMSKPQGFRYKSGQYMFLNCAAVSPFEWHPFSITSAPGDDYLSVHIRTLGDWTRSLKVKFSECCQPPDNGKSGLLRAEYLQGDRSPSTLPKVLIDGPYGAPAQDYKQYEVVLLVGLGIGATPMISILKDIVNNMKAMEEEEETNIEEGTNSGFGNKSPRGSSPHKKNSSSNFNTRRAYFYWVTREQGSFDWFKGVMNEVAEEDHKGVIELHNYCTSVYEEGDARSALIAMLQSLNHAKNGVDIVSGTRVKSHFAKPNWRAVYKRIAVSHPRARVGVFYCGPPALTKELGQLASDFSHNTNTKYDFHKENF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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