SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G07350 | AT | Annotation by Michelle Graham. TAIR10: TUDOR-SN protein 1 | chr5:2320344-2324892 REVERSE LENGTH=991 | SoyBase | E_val: 0 | ISS |
| GO:0009306 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein secretion | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0030244 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process | SoyBase | N/A | ISS |
| GO:0031047 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0048193 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport | SoyBase | N/A | ISS |
| GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
| GO:0005635 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nuclear envelope | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| GO:0004518 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nuclease activity | SoyBase | N/A | ISS |
| GO:0016788 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on ester bonds | SoyBase | N/A | ISS |
| KOG2039 | KOG | Transcriptional coactivator p100 | JGI | ISS | |
| PTHR12302 | Panther | EBNA2 BINDING PROTEIN P100 | JGI | ISS | |
| PF00565 | PFAM | Staphylococcal nuclease homologue | JGI | ISS | |
| PF00567 | PFAM | Tudor domain | JGI | ISS | |
| UniRef100_G7J2R6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nuclease domain-containing protein n=1 Tax=Medicago truncatula RepID=G7J2R6_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JXS8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JXS8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma04g38010 not represented in the dataset |
Glyma04g38010 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g17050 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g203000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g38010.1 sequence type=CDS gene model=Glyma04g38010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCATCAACGGCGAGTGGGGCCACCGGATGGTACAGGGGAAGAGTGAAGGCGGTTCCTTCCGGGGACTGTTTGGTCATTGTGGCGATCTCCAGCACCAAACCTGGTCCTTTGCCTGAAAAGACCATTACTCTTTCTTCTTTAATTGCACCTAGACTGGCGCGTAGAGGTGGTGTGGACGAGCCTTTTGCATGGGAAAGCAGAGAGTTTCTGAGGAAGCTCTGCATAGGGAAGGAAGTGACTTTCAGAGTGGACTACAACGTGCCGTCCATAAGTCGGGACTTTGGAACCGTTTTTGTCGGGGACAAGAATGTTGCCATGCTTGTTGTTTCTCAGGGATGGGTTAAGGTCAGGGAACAGGGGCAGCAGAAAGGAGAAGTTAGTCCGTACCTGGCAGAATTGTTGCGGTTGGAAGAACAGGCTAAACAAGAAGGCCTTGGGCGGTGGAGCAAGGTTCCCGGTGCTGCAGAGGCTTCAATCAGAAATTTACCACCTTCTGCCCTTGGTGACCCTAGTAACTTTGATGCTATGACTTTTTTAAATGCAAAGAAGGGATTGCCCATGGAGGCAGTTGTTGAGCAGGTTCGTGATGGCAGTACACTCCGTATCTATTTGCTCCCGGAGTTTCAGTTTGTCCAAGTTTTTGTTGCTGGAATTCAGTCTCCACAAATGGGAAGGAGAGCTGCACCTGAAAGTGTTGTTGAACCAGAGTTGACATCTGATGACACCAACGGAGATGTTCCTGGGGAACCTCGAGCCCCACTTACATCTGCACAAAGGCTTGCAGTTTCAACATCTGCTGCTGAAACTGCAGCCGATCCTTTTGCACATGATGCTAAATTTTTCACTGAGATGCGTGTATTGAATCGAGAAGTTCGGCTTGTCCTGGAAGGTGTCGATAAGTTTAGCAATTTAATTGGGTCAGTGTATTATCCTGATGGTGAATCAGCAAAGGACCTGGCATTGGAGCTTGTAGAAAACGGTTATGCAAAATACGTTGATTGGAGTGCAAATATGATGGAAGAAGAGGCAAAGCAAAAGCTGAAGACTGCTGAACTGCAGGCTAAGAAAGACAGGTTAAGGATGTGGACAAACTATGTACCACCGCCTTCAAATTCAAAGGCAATTCATAACCAGAATTTTTCTGGCAAGGTGGTTGAGGTTGTGAGTGGAGACTGTATTGTTGTTGCTGATGATTCCATTCCATATGGTAGTCCTCTAGCTGAGAGGCGAGTTAACCTTTCAAGTATTAGGTGTCCAAAAATGGGCAATCCTCGTCGAGACGAAAAACCAGCTCCCTATGCCCGTGAAGCAAAGGAGTTCTTGAGAACACGCCTCATTGGTCGTCAAGTTAATGTTCAGATGGAATATTCTAGAAAGGTTTCTCCCACGGATGGATCTGTAGTTCCATCAGCCGCTGATTCCCGAGTAATGGATTTTGGATCAGTCTTTCTATTGTCTGGTGCCAAGGTTGACAATGATGATGCCCCATCATCGGCTCCACCTGCTGGAAGTCAGCAAAATGGGGTGAATGTTGCTGAGTTAATAGTGGGCCGTGGCTTTGGAACTGTCATTAGACATCGTGACTTTGAAGAGAGATCTAACTATTATGATTCTCTTCTTGCTGCTGAATCGCGTGCAATTTCTGGAAGGAAAGGCACCCACTCTGCCAAGGATCCTCCAGTGATGCATATAACTGATTTGACCATGGCATCGGCTAAGAAAGCCAGAGACTTCTTGCCTTTCCTGCACCGAAGTAGAAGAGTTCCTGCTGTTGTGGAATATGTGCTCAGTGGCCATCGTTTTAAATTGTTAATTCCAAAAGAAACTTGCAGCATTGCGTTCTCTTTTTCTGGAGTCAGGTGTCCTGGTCGTGATGAACCATATTCAGACGAAGCAATTGCTCTGATGAGGAGAAAGATAATGCAAAGAGATGTTGAGATAGAGGTTGAAACCGTTGATAGAACTGGAACGTTCTTGGGATCCTTATGGGAGTCGAGGACCAATGTGGCAATTACACTGCTTGAAGCTGGTCTTGCAAAACTTCATACATCCTTTGGCAGTGATAGAATTCCTGATTTTCATCTTCTGGATCAGGCTGAACAATCTGCTAAGAGGCAAAAGCTGAAAATCTGGGAGAATTTTGTTGAAGGAGAGGAAGTATCTAATGGTGCAGCAGTTGAAAACAAACAGCAAGAAGTACTTAAGGTAATTGTTACAGAAGTCTTGGGTGGTGGTAAATTCTATGTCCAGACAGTTGGAGATCAAAAGATCGCATCCATTCAGCAACAACTTGCTTCTTTGAACCTGAAGGATGCTCCTGTGCTTGGTGCTTTCAATCCTAAGAAGGGTGACATAGTCCTTTGTTATTTTCATGCTGACAAGTCTTGGTACCGGGCAATGGTTGTCAATACACCCCGAGGACCAGTTGAATCACCTAACGACTTGTTCGAAGTATTCTATATTGATTATGGAAATCAAGAAGTAGTACCCTACAGTCAACTACGGCCTGTTGATCCATCTGTGTCTGCTGCTCCGGGTCTTGCTCAACTGTGTAGCCTTGCATACATCAAGATTCCAAACTTGGAAGAGGATTTTGGCCAAGAAGCAGCTGAATATTTGAGTGAACTCACTTTAAACAGTGGAAAAGAGTTCAGGGCCAAGGTTGAGGAGAAAGATACTTCCGGAGGAAAAGTGAAAGGGCAGGGAACTGGGACAGTCCTTGCTGTAACTCTTGTTGCCGTGGATGCTGAAATCAGCGTTAATGCTGCCATGCTACAGGAAGGGCTTGCTAGGACAGAAAAAAGAAACAGGTGGGACAGAAAAGACAGACAGACAGCTCTTGATAATTTGGAGAATTTCCAGGAAGAAGCAAAGACCAGCAGGCGCGGAATGTGGCAGTATGGAGATATTCAGTCAGATGACGAGGACACTGCTCCTCCTCCTAGAAAGGCTGCTGGTGGCCGTAAATAA
>Glyma04g38010.1 sequence type=predicted peptide gene model=Glyma04g38010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASTASGATGWYRGRVKAVPSGDCLVIVAISSTKPGPLPEKTITLSSLIAPRLARRGGVDEPFAWESREFLRKLCIGKEVTFRVDYNVPSISRDFGTVFVGDKNVAMLVVSQGWVKVREQGQQKGEVSPYLAELLRLEEQAKQEGLGRWSKVPGAAEASIRNLPPSALGDPSNFDAMTFLNAKKGLPMEAVVEQVRDGSTLRIYLLPEFQFVQVFVAGIQSPQMGRRAAPESVVEPELTSDDTNGDVPGEPRAPLTSAQRLAVSTSAAETAADPFAHDAKFFTEMRVLNREVRLVLEGVDKFSNLIGSVYYPDGESAKDLALELVENGYAKYVDWSANMMEEEAKQKLKTAELQAKKDRLRMWTNYVPPPSNSKAIHNQNFSGKVVEVVSGDCIVVADDSIPYGSPLAERRVNLSSIRCPKMGNPRRDEKPAPYAREAKEFLRTRLIGRQVNVQMEYSRKVSPTDGSVVPSAADSRVMDFGSVFLLSGAKVDNDDAPSSAPPAGSQQNGVNVAELIVGRGFGTVIRHRDFEERSNYYDSLLAAESRAISGRKGTHSAKDPPVMHITDLTMASAKKARDFLPFLHRSRRVPAVVEYVLSGHRFKLLIPKETCSIAFSFSGVRCPGRDEPYSDEAIALMRRKIMQRDVEIEVETVDRTGTFLGSLWESRTNVAITLLEAGLAKLHTSFGSDRIPDFHLLDQAEQSAKRQKLKIWENFVEGEEVSNGAAVENKQQEVLKVIVTEVLGGGKFYVQTVGDQKIASIQQQLASLNLKDAPVLGAFNPKKGDIVLCYFHADKSWYRAMVVNTPRGPVESPNDLFEVFYIDYGNQEVVPYSQLRPVDPSVSAAPGLAQLCSLAYIKIPNLEEDFGQEAAEYLSELTLNSGKEFRAKVEEKDTSGGKVKGQGTGTVLAVTLVAVDAEISVNAAMLQEGLARTEKRNRWDRKDRQTALDNLENFQEEAKTSRRGMWQYGDIQSDDEDTAPPPRKAAGGRK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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