SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G51020 | AT | Annotation by Michelle Graham. TAIR10: crumpled leaf | chr5:20745560-20747165 REVERSE LENGTH=269 | SoyBase | E_val: 3.00E-155 | ISS |
| GO:0000302 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to reactive oxygen species | SoyBase | N/A | ISS |
| GO:0010020 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast fission | SoyBase | N/A | ISS |
| GO:0017009 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein-phycocyanobilin linkage | SoyBase | N/A | ISS |
| GO:0043572 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plastid fission | SoyBase | N/A | ISS |
| GO:0051302 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell division | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009707 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast outer membrane | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PF06206 | PFAM | CpeT/CpcT family (DUF1001) | JGI | ISS | |
| UniRef100_E6NU06 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: JHL07K02.6 protein n=1 Tax=Jatropha curcas RepID=E6NU06_9ROSI | SoyBase | E_val: 1.00E-168 | ISS |
| UniRef100_I1JXS0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JXS0_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma04g37950 not represented in the dataset |
Glyma04g37950 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g17120 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g202400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g37950.1 sequence type=CDS gene model=Glyma04g37950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTACCGGGGATTCGGATTCGGAATCGAATGGATGGAACCGTGCTCGTGGGTTGGCGCTTAAGACTCTGCTACTAATTGGTGGCGCACTTCTCGTTAAGCGCCTCCGCAAGTCCACCACGCGTTGGGACCACGCTCATTTCGTCTCCAACTCCCTCACCGGCGAAAAGTATTCCAAGGAGCAAGCTTCCAGAGACCCGGATAACTATTTCAACATTAGAATGCTTACATGCCCCGCAGCGGAGCTAGTGGATGGTTCCAAGGTCTTGTATTTTGAACAGGCTTTTTGGAGGACTCCACAAAAACCCTTTCGGCAGAGGCTTTTTATGGTGAAACCTTGTCCTAAAGAGTTGAAATGTGATGTTGAGTTAAGTACATATGCCATTAGAGACATGGAGGAGTACAAAAATTTCTGTGATCGACCAAGGGATCAGCGTCCACAGCCGGAAGAAGTCATTGGAGATATTGCTGAACATTTGACAACAGTACATCTTAAGCGTTGTCCACGTGGAAAACGTTGCTTATATGAAGGTTCAACCCCACCTGGTGGATTTCCTAATTCATGGAATGGGGCAACCTACTGTACTTCAGAGCTTGCGATTTTAAAGAACAATGAGATACATACCTGGGACAGGGGTTATGATGATGGTGGAAATCAAGTTTGGGGGCAAAAAGAAGGCCCTTACGAGTTCAAGCCTGCACCAACCTCCAGTTTTAATGATATGTTTTCTCCTTTGAATTTCCCCCCTCCACCATCCATGGAGAGAAGAATAGAGGGTTCATTTGTTTTGCAAGAATGA
>Glyma04g37950.1 sequence type=predicted peptide gene model=Glyma04g37950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGTGDSDSESNGWNRARGLALKTLLLIGGALLVKRLRKSTTRWDHAHFVSNSLTGEKYSKEQASRDPDNYFNIRMLTCPAAELVDGSKVLYFEQAFWRTPQKPFRQRLFMVKPCPKELKCDVELSTYAIRDMEEYKNFCDRPRDQRPQPEEVIGDIAEHLTTVHLKRCPRGKRCLYEGSTPPGGFPNSWNGATYCTSELAILKNNEIHTWDRGYDDGGNQVWGQKEGPYEFKPAPTSSFNDMFSPLNFPPPPSMERRIEGSFVLQE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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