Glyma04g37866 - SoyBase

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Report for Sequence Feature Glyma04g37866

Feature Type:	gene_model
Chromosome:	Gm04
Start:	44335673
stop:	44345785
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g37866

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G61890	AT	Annotation by Michelle Graham. TAIR10: Integrase-type DNA-binding superfamily protein \| chr5:24852639-24853744 REVERSE LENGTH=248	SoyBase	E_val: 4.00E-40	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006865	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid transport	SoyBase	N/A	ISS
GO:0050832	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to fungus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF00847	PFAM	AP2 domain	JGI		ISS
UniRef100_G7J397	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ethylene-responsive transcription factor RAP2-6 n=1 Tax=Medicago truncatula RepID=G7J397_MEDTR	SoyBase	E_val: 1.00E-45	ISS
UniRef100_UPI0002339D8A	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339D8A related cluster n=1 Tax=unknown RepID=UPI0002339D8A	SoyBase	E_val: 2.00E-133	ISS

Expression Patterns of Glyma04g37866

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g37866 not represented in the dataset	Glyma04g37866 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g37866

Paralog	Evidence	Comments
Glyma06g17180	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g37866 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma04g37866

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g37866

Limit To All Plant Sequences

>Glyma04g37866.1   sequence type=CDS   gene model=Glyma04g37866   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTTTCTTTCCATCACATTTAACCTCTTGGTGGGTGGAGGATGTGCACAAAGTTGCCTCAATGCCAGTCCTACTATTTCTTTACGAGATCAATTCTATGGTTACTTGATTGATCTTGGATCTCAATTGTCTTCCCTTGAGCTCTTATTAGTGACTTTAAATAGATTCTTGGGGAGTGTAAGAAGAAGACACTACAGAGGAGTGAGGCAGCGTCCATGGGGAAAGTGGGCTGCAGAGATTCACGATCCAAAGAAAGCAGCGAGGGTATGGCTTGGAACATTCGAAACTGCTGAAGCTGCAGCTCTTGCTTATGATGAAGCTGCTCTCAGATTCAAAGGAAGCAAAGCAAAGCTCAATTTCCCTGAAAGGGTTCAAGGCACAGCTAGCGAATTTGGTTACCTCACAAATCAGTACATGTCATCAAGCAGCACTAATTCTAACCCTATTGCTCCACACTTGACTACTCAAGAAACTTATTCGCCAAGTCACTTTCAATATGCACAGCAACAATTCATGAGTGGTGGGAGTAACAGCTTCAGTAACCAAGATATGCTTCGGTTCTATGGGGGAGACAACATGTTTGTTTCTTCTCAGCAGTCTGCATCTTCGTCTTCTTCTACTGCACTGTCTCAGCAGCAGCAAGAAGAGTTGCTGAAATTTTCGATGCAATTTGGAGGTTCTTCTCATTCTAATCATTCTGGGAATTGGAGGGGGAGTGTAAGAAGAAGACACTACAGAGGAGTGAGGCAGCGTCCATGGGGAAAGTGGGCTGCAGAGATTCGCGATCCAAAGAAAGCAGCGAGGGTATGGCTTGGAACATTCGAAACTGCTGAAGCTGCAGCTCTTGCTTATGATGAAGCTGCACTCAGATTCAAAGGAAGCAAAGCAAAGCTCAATTTCCCTGAAAGGGTTCAAGGCACAGCTAGCGAATTTGGTTACCTCACAAATCAGCACATGTCATCAAGCAGCACTAATTCTAACCCTGTTGCTCCACACTTGACTACTCAAGAAACTTATTCACCAAGTCACTTTCAATATGCACAGCAACAATTCATGAGTGGTGAGAGTAACAGCTTCAGTAACCAAGATATGCTTCGTTTCTATGGGGGAGACAACATGTTTGTTTCTTCTCAGCAATCTGCATCTTCGTCTTCTTCTACTGCACTGTCTCAGCAGCAGCAAGAAGAGTTGCTGAAATTTTCGATGCAATTTGGAGGTTCTTCTCATTCTAATCATTCTGGGAATTGGAGGGGTGGACATTGA

Predicted protein sequences of Glyma04g37866

Limit To All Plant Sequences

>Glyma04g37866.1   sequence type=predicted peptide   gene model=Glyma04g37866   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSFLSITFNLLVGGGCAQSCLNASPTISLRDQFYGYLIDLGSQLSSLELLLVTLNRFLGSVRRRHYRGVRQRPWGKWAAEIHDPKKAARVWLGTFETAEAAALAYDEAALRFKGSKAKLNFPERVQGTASEFGYLTNQYMSSSSTNSNPIAPHLTTQETYSPSHFQYAQQQFMSGGSNSFSNQDMLRFYGGDNMFVSSQQSASSSSSTALSQQQQEELLKFSMQFGGSSHSNHSGNWRGSVRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEAAALAYDEAALRFKGSKAKLNFPERVQGTASEFGYLTNQHMSSSSTNSNPVAPHLTTQETYSPSHFQYAQQQFMSGESNSFSNQDMLRFYGGDNMFVSSQQSASSSSSTALSQQQQEELLKFSMQFGGSSHSNHSGNWRGGH*

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