Glyma04g37830 - SoyBase

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Report for Sequence Feature Glyma04g37830

Feature Type:	gene_model
Chromosome:	Gm04
Start:	44304295
stop:	44307480
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g37830

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G61910	AT	Annotation by Michelle Graham. TAIR10: DCD (Development and Cell Death) domain protein \| chr5:24861091-24863741 REVERSE LENGTH=742	SoyBase	E_val: 3.00E-43	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF10539	PFAM	Development and cell death domain	JGI		ISS
UniRef100_E6NU18	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: JHL07K02.18 protein (Fragment) n=1 Tax=Jatropha curcas RepID=E6NU18_9ROSI	SoyBase	E_val: 7.00E-42	ISS
UniRef100_I1JXR0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JXR0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g37830

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g37830 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g201400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g37830

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g37830

Limit To All Plant Sequences

>Glyma04g37830.4   sequence type=transcript   gene model=Glyma04g37830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCTGAAGCGAGTATGAGACCCAAGTTTTGTTTTAACCCATAGAAGAAGAAGGGAAGGGTTAGCGAGTAACTACTACTACTGTCACTGTAAGATATTCATATTCTTACTATTCTCTCTACACTCACTGAGTTCAGTTGGGTTGGCTTCCCCGTTTTATTTAAGCAACCCCCTCTCATTTTCTCTCTTTCATAGCTTTGCGTGAAAAATGCCATTTTTATTTTCGCTTATTCACTGTAATTGTTATGTATATGCGTTCTTCCTCATACCCTACTTCTCTATTCTCTACGTTTTATTTATTTGAAACATTTGCAGTTTGATTTTGAAATTCATATAAGGGTTTCTTTACCCCTAATGCATCTTTCTTACGCTACTGTGACACACAAGCAAATTTAACCAACCTGCACATATAAATGAATAATCATGCTCTTACTTTTACGGCTAGGATCATGAAATAATGAATTTATTCTTTTGTTGGCATGCAATCACTGCATATCATTTCGTGATTTGAATAATCAAATATTCACAATCTGCTGATAAGTTATGTAGTGACTCAATGGAAGGTGAAGAGGTGTTGGATGTGGACATTCAGGAGGAGAAGCTTTCTGGCTTTATTTTCATGTGTAATAGAATTACAAAACCGGAGTGCTACTGTTACCGAGTTTTCGGGCTTCCTGCTGGGAGAAAGGATGTTGTTGAGAAGATCAATCCTGGGACATACCTTTTTCTGTTTGACACTGATGTCAAGCTTCTCTATGGCATATACATGGCAACCTCGACTGGGAAGCTAAACATAGAACCATTAGCTTTTTGTCAGAAATTCCCTGCTCAGGTGCAATTCAAAATTTACAAAGACTGTTTACCCTTGCCAGTGAATTGCTTTAAACATGCCATTCGAGATAATTACCAGAAAGGCTCCAACAAATTTAATCCTGAACTCAATATTAGACAAGTAAGAAGTCTAATAGAATTGTTTCGCCCATTACATGAATTGCCAATTGCACCTGGACGTCCTTTTATACAGAAACCAATGAATATTGTTTATCATCAGATATCAGAGCCACCCATTTCGGAGGGTGCATTTTTGTCTAGGATGTCACCCAATCAAGCTCCAAGGCTGTTGAACTATAAACATGTAAATGAACTCAGGAAGCCTACTGGTTGTGCCTATCCTGTTCATAATGTTATGCCTTATTCAGCTGCAGCACAGCTTGTGGCATCCCAAGGTTCAACGAATCAGCTTTATTACCCTGCAAGTACACTTGCTCTGGAGGGTACTTATGCACCTGGGATAGGCAGCAGTCATACTCAACCACTACCAGATCCTCAATATTCACATCAAACTATCCTTAACCCACAACCTGAATTTCATTCTTCCCTGATGAACAGCGGTCATGCTCAGCAATTGCAAGAGTCTCAAGATGCACATCATAACATCATACATCCCCAATCTGAATTTCATTCTTCACTGATGGCTATGGGTAGCAGTCATACTCAATCACTGCAAGGTCCTCAATATCCATATCAGAGTATCCCAAACCCATCACACGAGTTTTATACCCCAGTGGCAAATGCAGGCAGCAGTCAACCCCAGTTGTCACGGGATACTCACTATACACACCAGAATATCCTAAACTTGCAACCTGATGCTTATTCCACCATGGCGAATACAGGCAGTAGTTATGCTCAATTATTGCCAGATCCCCAACACACACATCAGAATGCCCAAAATCCTCAGCCTGATTCCAATTCTTCCTTGGTGAATATGAGCCATGCCACTGTCACGATGCAATTGCATACTGTGTCATCTTTATATCATCCATATGTTCCTCAAGAAGTTGCACCTTCCATGTATTCATCGCAATGGAGATGATTCATTGACTGAAGCTATGATGTTCAAGATTCCAGAGGAGAAATTGCTCCATTATAAATTTTTATATTTATAATTGTTTGCTGAACAAGCATACTTGGTCATGTGCTTACTGCTTGGCATTTTGTCAATATCTCATGCCTCCGCTGTCGCCCAGATCTGGAGCCACACAAGGCAAGTGGTCAACAAACTGGAATGGGATAGACCTGAACTCAGCAAATTCAAACTCTTAGTACCTAATCATTTTTTCACTTAAATATTGCATTTTGCTGCCTTCTGAGTATATAAAGGCGCCATATATACTGTTTAATTAGTGATGTTCAATTACCCTTTTTGGTAGGGGTGTTTATAAACTGATTCGATCTATTGAGAACTGAAAAAATTGATCCAAAAAATTGAAAATAAAAAATTGAATAGACCG

>Glyma04g37830.5   sequence type=transcript   gene model=Glyma04g37830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGAAGCGAGTATGAGACCCAAGTTTTGTTTTAACCCATAGAAGAAGAAGGGAAGGGTTAGCGAGTAACTACTACTACTGTCACTTGACTCAATGGAAGGTGAAGAGGTGTTGGATGTGGACATTCAGGAGGAGAAGCTTTCTGGCTTTATTTTCATGTGTAATAGAATTACAAAACCGGAGTGCTACTGTTACCGAGTTTTCGGGCTTCCTGCTGGGAGAAAGGATGTTGTTGAGAAGATCAATCCTGGGACATACCTTTTTCTGTTTGACACTGATGTCAAGCTTCTCTATGGCATATACATGGCAACCTCGACTGGGAAGCTAAACATAGAACCATTAGCTTTTTGTCAGAAATTCCCTGCTCAGGTGCAATTCAAAATTTACAAAGACTGTTTACCCTTGCCAGTGAATTGCTTTAAACATGCCATTCGAGATAATTACCAGAAAGGCTCCAACAAATTTAATCCTGAACTCAATATTAGACAAGTAAGAAGTCTAATAGAATTGTTTCGCCCATTACATGAATTGCCAATTGCACCTGGACGTCCTTTTATACAGAAACCAATGAATATTGTTTATCATCAGATATCAGAGCCACCCATTTCGGAGGGTGCATTTTTGTCTAGGATGTCACCCAATCAAGCTCCAAGGCTGTTGAACTATAAACATGTAAATGAACTCAGGAAGCCTACTGGTTGTGCCTATCCTGTTCATAATGTTATGCCTTATTCAGCTGCAGCACAGCTTGTGGCATCCCAAGGTTCAACGAATCAGCTTTATTACCCTGCAAGTACACTTGCTCTGGAGGGTACTTATGCACCTGGGATAGGCAGCAGTCATACTCAACCACTACCAGATCCTCAATATTCACATCAAACTATCCTTAACCCACAACCTGAATTTCATTCTTCCCTGATGAACAGCGGTCATGCTCAGCAATTGCAAGAGTCTCAAGATGCACATCATAACATCATACATCCCCAATCTGAATTTCATTCTTCACTGATGGCTATGGGTAGCAGTCATACTCAATCACTGCAAGGTCCTCAATATCCATATCAGAGTATCCCAAACCCATCACACGAGTTTTATACCCCAGTGGCAAATGCAGGCAGCAGTCAACCCCAGTTGTCACGGGATACTCACTATACACACCAGAATATCCTAAACTTGCAACCTGATGCTTATTCCACCATGGCGAATACAGGCAGTAGTTATGCTCAATTATTGCCAGATCCCCAACACACACATCAGAATGCCCAAAATCCTCAGCCTGATTCCAATTCTTCCTTGGTGAATATGAGCCATGCCACTGTCACGATGCAATTGCATACTGTGTCATCTTTATATCATCCATATGTTCCTCAAGAAGTTGCACCTTCCATGTATTCATCGCAATGATGATTCATTGACTGAAGCTATGATGTTCAAGATTCCAGAGGAGAAATTGCTCCATTATAAATTTTTATATTTATAATTGTTTGCTGAACAAGCATACTTGGTCATGTGCTTACTGCTTGGCATTTTGTCAATATCTCATGCCTCCGCTGTCGCCCAGATCTGGAGCCACACAAGGCAAGTGGTCAACAAACTGGAATGGGATAGACCTGAACTCAGCAAATTCAAACTCTTAGTACCTAATCATTTTTTCACTTAAATATTGCATTTTGCTGCCTTCTGAGTATATAAAGGCGCCATATATACTGTTTAATTAGTGATGTTCAATTACCCTTTTTGGTAGGGGTGTTTATAAACTGATTCGATCTATTGAGAACTGAAAAAATTGATCCAAAA

Coding sequences of Glyma04g37830

Limit To All Plant Sequences

>Glyma04g37830.3   sequence type=CDS   gene model=Glyma04g37830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGTGAAGAGGTGTTGGATGTGGACATTCAGGAGGAGAAGCTTTCTGGCTTTATTTTCATGTGTAATAGAATTACAAAACCGGAGTGCTACTGTTACCGAGTTTTCGGGCTTCCTGCTGGGAGAAAGGATGTTGTTGAGAAGATCAATCCTGGGACATACCTTTTTCTGTTTGACACTGATGTCAAGCTTCTCTATGGCATATACATGGCAACCTCGACTGGGAAGCTAAACATAGAACCATTAGCTTTTTGTCAGAAATTCCCTGCTCAGGTGCAATTCAAAATTTACAAAGACTGTTTACCCTTGCCAGTGAATTGCTTTAAACATGCCATTCGAGATAATTACCAGAAAGGCTCCAACAAATTTAATCCTGAACTCAATATTAGACAAGTAAGAAGTCTAATAGAATTGTTTCGCCCATTACATGAATTGCCAATTGCACCTGGACGTCCTTTTATACAGAAACCAATGAATATTGTTTATCATCAGATATCAGAGCCACCCATTTCGGAGGGTGCATTTTTGTCTAGGATGTCACCCAATCAAGCTCCAAGGCTGTTGAACTATAAACATGTAAATGAACTCAGGAAGCCTACTGGTTGTGCCTATCCTGTTCATAATGTTATGCCTTATTCAGCTGCAGCACAGCTTGTGGCATCCCAAGGTTCAACGAATCAGCTTTATTACCCTGCAAGTACACTTGCTCTGGAGGGTACTTATGCACCTGGGATAGGCAGCAGTCATACTCAACCACTACCAGATCCTCAATATTCACATCAAACTATCCTTAACCCACAACCTGAATTTCATTCTTCCCTGATGAACAGCGGTCATGCTCAGCAATTGCAAGAGTCTCAAGATGCACATCATAACATCATACATCCCCAATCTGAATTTCATTCTTCACTGATGGCTATGGGTAGCAGTCATACTCAATCACTGCAAGGTCCTCAATATCCATATCAGAGTATCCCAAACCCATCACACGAGTTTTATACCCCAGTGGCAAATGCAGGCAGCAGTCAACCCCAGTTGTCACGGGATACTCACTATACACACCAGAATATCCTAAACTTGCAACCTGATGCTTATTCCACCATGGCGAATACAGGCAGTAGTTATGCTCAATTATTGCCAGATCCCCAACACACACATCAGAATGCCCAAAATCCTCAGCCTGATTCCAATTCTTCCTTGGTGAATATGAGCCATGCCACTGTCACGATGCAATTGCATACTGTGTCATCTTTATATCATCCATATGTTCCTCAAGAAGTTGCACCTTCCATGTATTCATCGCAATGGAGATGA

>Glyma04g37830.4   sequence type=CDS   gene model=Glyma04g37830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGTGAAGAGGTGTTGGATGTGGACATTCAGGAGGAGAAGCTTTCTGGCTTTATTTTCATGTGTAATAGAATTACAAAACCGGAGTGCTACTGTTACCGAGTTTTCGGGCTTCCTGCTGGGAGAAAGGATGTTGTTGAGAAGATCAATCCTGGGACATACCTTTTTCTGTTTGACACTGATGTCAAGCTTCTCTATGGCATATACATGGCAACCTCGACTGGGAAGCTAAACATAGAACCATTAGCTTTTTGTCAGAAATTCCCTGCTCAGGTGCAATTCAAAATTTACAAAGACTGTTTACCCTTGCCAGTGAATTGCTTTAAACATGCCATTCGAGATAATTACCAGAAAGGCTCCAACAAATTTAATCCTGAACTCAATATTAGACAAGTAAGAAGTCTAATAGAATTGTTTCGCCCATTACATGAATTGCCAATTGCACCTGGACGTCCTTTTATACAGAAACCAATGAATATTGTTTATCATCAGATATCAGAGCCACCCATTTCGGAGGGTGCATTTTTGTCTAGGATGTCACCCAATCAAGCTCCAAGGCTGTTGAACTATAAACATGTAAATGAACTCAGGAAGCCTACTGGTTGTGCCTATCCTGTTCATAATGTTATGCCTTATTCAGCTGCAGCACAGCTTGTGGCATCCCAAGGTTCAACGAATCAGCTTTATTACCCTGCAAGTACACTTGCTCTGGAGGGTACTTATGCACCTGGGATAGGCAGCAGTCATACTCAACCACTACCAGATCCTCAATATTCACATCAAACTATCCTTAACCCACAACCTGAATTTCATTCTTCCCTGATGAACAGCGGTCATGCTCAGCAATTGCAAGAGTCTCAAGATGCACATCATAACATCATACATCCCCAATCTGAATTTCATTCTTCACTGATGGCTATGGGTAGCAGTCATACTCAATCACTGCAAGGTCCTCAATATCCATATCAGAGTATCCCAAACCCATCACACGAGTTTTATACCCCAGTGGCAAATGCAGGCAGCAGTCAACCCCAGTTGTCACGGGATACTCACTATACACACCAGAATATCCTAAACTTGCAACCTGATGCTTATTCCACCATGGCGAATACAGGCAGTAGTTATGCTCAATTATTGCCAGATCCCCAACACACACATCAGAATGCCCAAAATCCTCAGCCTGATTCCAATTCTTCCTTGGTGAATATGAGCCATGCCACTGTCACGATGCAATTGCATACTGTGTCATCTTTATATCATCCATATGTTCCTCAAGAAGTTGCACCTTCCATGTATTCATCGCAATGGAGATGA

>Glyma04g37830.5   sequence type=CDS   gene model=Glyma04g37830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGTGAAGAGGTGTTGGATGTGGACATTCAGGAGGAGAAGCTTTCTGGCTTTATTTTCATGTGTAATAGAATTACAAAACCGGAGTGCTACTGTTACCGAGTTTTCGGGCTTCCTGCTGGGAGAAAGGATGTTGTTGAGAAGATCAATCCTGGGACATACCTTTTTCTGTTTGACACTGATGTCAAGCTTCTCTATGGCATATACATGGCAACCTCGACTGGGAAGCTAAACATAGAACCATTAGCTTTTTGTCAGAAATTCCCTGCTCAGGTGCAATTCAAAATTTACAAAGACTGTTTACCCTTGCCAGTGAATTGCTTTAAACATGCCATTCGAGATAATTACCAGAAAGGCTCCAACAAATTTAATCCTGAACTCAATATTAGACAAGTAAGAAGTCTAATAGAATTGTTTCGCCCATTACATGAATTGCCAATTGCACCTGGACGTCCTTTTATACAGAAACCAATGAATATTGTTTATCATCAGATATCAGAGCCACCCATTTCGGAGGGTGCATTTTTGTCTAGGATGTCACCCAATCAAGCTCCAAGGCTGTTGAACTATAAACATGTAAATGAACTCAGGAAGCCTACTGGTTGTGCCTATCCTGTTCATAATGTTATGCCTTATTCAGCTGCAGCACAGCTTGTGGCATCCCAAGGTTCAACGAATCAGCTTTATTACCCTGCAAGTACACTTGCTCTGGAGGGTACTTATGCACCTGGGATAGGCAGCAGTCATACTCAACCACTACCAGATCCTCAATATTCACATCAAACTATCCTTAACCCACAACCTGAATTTCATTCTTCCCTGATGAACAGCGGTCATGCTCAGCAATTGCAAGAGTCTCAAGATGCACATCATAACATCATACATCCCCAATCTGAATTTCATTCTTCACTGATGGCTATGGGTAGCAGTCATACTCAATCACTGCAAGGTCCTCAATATCCATATCAGAGTATCCCAAACCCATCACACGAGTTTTATACCCCAGTGGCAAATGCAGGCAGCAGTCAACCCCAGTTGTCACGGGATACTCACTATACACACCAGAATATCCTAAACTTGCAACCTGATGCTTATTCCACCATGGCGAATACAGGCAGTAGTTATGCTCAATTATTGCCAGATCCCCAACACACACATCAGAATGCCCAAAATCCTCAGCCTGATTCCAATTCTTCCTTGGTGAATATGAGCCATGCCACTGTCACGATGCAATTGCATACTGTGTCATCTTTATATCATCCATATGTTCCTCAAGAAGTTGCACCTTCCATGTATTCATCGCAATGA

Predicted protein sequences of Glyma04g37830

Limit To All Plant Sequences

>Glyma04g37830.3   sequence type=predicted peptide   gene model=Glyma04g37830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGEEVLDVDIQEEKLSGFIFMCNRITKPECYCYRVFGLPAGRKDVVEKINPGTYLFLFDTDVKLLYGIYMATSTGKLNIEPLAFCQKFPAQVQFKIYKDCLPLPVNCFKHAIRDNYQKGSNKFNPELNIRQVRSLIELFRPLHELPIAPGRPFIQKPMNIVYHQISEPPISEGAFLSRMSPNQAPRLLNYKHVNELRKPTGCAYPVHNVMPYSAAAQLVASQGSTNQLYYPASTLALEGTYAPGIGSSHTQPLPDPQYSHQTILNPQPEFHSSLMNSGHAQQLQESQDAHHNIIHPQSEFHSSLMAMGSSHTQSLQGPQYPYQSIPNPSHEFYTPVANAGSSQPQLSRDTHYTHQNILNLQPDAYSTMANTGSSYAQLLPDPQHTHQNAQNPQPDSNSSLVNMSHATVTMQLHTVSSLYHPYVPQEVAPSMYSSQWR*

>Glyma04g37830.4   sequence type=predicted peptide   gene model=Glyma04g37830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGEEVLDVDIQEEKLSGFIFMCNRITKPECYCYRVFGLPAGRKDVVEKINPGTYLFLFDTDVKLLYGIYMATSTGKLNIEPLAFCQKFPAQVQFKIYKDCLPLPVNCFKHAIRDNYQKGSNKFNPELNIRQVRSLIELFRPLHELPIAPGRPFIQKPMNIVYHQISEPPISEGAFLSRMSPNQAPRLLNYKHVNELRKPTGCAYPVHNVMPYSAAAQLVASQGSTNQLYYPASTLALEGTYAPGIGSSHTQPLPDPQYSHQTILNPQPEFHSSLMNSGHAQQLQESQDAHHNIIHPQSEFHSSLMAMGSSHTQSLQGPQYPYQSIPNPSHEFYTPVANAGSSQPQLSRDTHYTHQNILNLQPDAYSTMANTGSSYAQLLPDPQHTHQNAQNPQPDSNSSLVNMSHATVTMQLHTVSSLYHPYVPQEVAPSMYSSQWR*

>Glyma04g37830.5   sequence type=predicted peptide   gene model=Glyma04g37830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGEEVLDVDIQEEKLSGFIFMCNRITKPECYCYRVFGLPAGRKDVVEKINPGTYLFLFDTDVKLLYGIYMATSTGKLNIEPLAFCQKFPAQVQFKIYKDCLPLPVNCFKHAIRDNYQKGSNKFNPELNIRQVRSLIELFRPLHELPIAPGRPFIQKPMNIVYHQISEPPISEGAFLSRMSPNQAPRLLNYKHVNELRKPTGCAYPVHNVMPYSAAAQLVASQGSTNQLYYPASTLALEGTYAPGIGSSHTQPLPDPQYSHQTILNPQPEFHSSLMNSGHAQQLQESQDAHHNIIHPQSEFHSSLMAMGSSHTQSLQGPQYPYQSIPNPSHEFYTPVANAGSSQPQLSRDTHYTHQNILNLQPDAYSTMANTGSSYAQLLPDPQHTHQNAQNPQPDSNSSLVNMSHATVTMQLHTVSSLYHPYVPQEVAPSMYSSQ*

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