Report for Sequence Feature Glyma04g37780
Feature Type: gene_model
Chromosome: Gm04
Start: 44226672
stop: 44234688
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g37780
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G61980 AT
Annotation by Michelle Graham. TAIR10: ARF-GAP domain 1 | chr5:24894472-24899178 FORWARD LENGTH=828
SoyBase E_val: 0 ISS
GO:0007010 GO-bp
Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization
SoyBase N/A ISS
GO:0048610 GO-bp
Annotation by Michelle Graham. GO Biological Process: cellular process involved in reproduction
SoyBase N/A ISS
GO:0048868 GO-bp
Annotation by Michelle Graham. GO Biological Process: pollen tube development
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0005794 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus
SoyBase N/A ISS
GO:0030139 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: endocytic vesicle
SoyBase N/A ISS
GO:0005543 GO-mf
Annotation by Michelle Graham. GO Molecular Function: phospholipid binding
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
KOG0521
KOG
Putative GTPase activating proteins (GAPs)
JGI ISS
PTHR23180 Panther
CENTAURIN/ARF
JGI ISS
PTHR23180:SF22 Panther
GCN4-COMPLEMENTING PROTEIN
JGI ISS
PF00023 PFAM
Ankyrin repeat
JGI ISS
PF00169 PFAM
PH domain
JGI ISS
PF01412 PFAM
Putative GTPase activating protein for Arf
JGI ISS
PF03114 PFAM
BAR domain
JGI ISS
UniRef100_G7J3A5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: ADP-ribosylation factor GTPase-activating protein n=1 Tax=Medicago truncatula RepID=G7J3A5_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI0002339D87 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0002339D87 related cluster n=1 Tax=unknown RepID=UPI0002339D87
SoyBase E_val: 0 ISS
Expression Patterns of Glyma04g37780
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma04g37780
Paralog Evidence Comments
Glyma06g17295 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g37780 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g200800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g37780
Coding sequences of Glyma04g37780
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g37780.1 sequence type=CDS gene model=Glyma04g37780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAATTTCTCAAAACTCAACGACTCGCCCATGTTCCGGCAACAGCTCCAGTGCATGGAAGAGAGTTCAGAATCGTTACGCTCGAGATGTTTCAAGTTCTACAAAGGATGTCGAAAGTACACGGAAGGGCTTGGAGAGGCATATGATGGAGACATTGCATTTGCAAGTGCCCTTGAAAATTTTGGAGGAGGGCATAATGATCCTCTATTTGTAACTTTGGGAGGACCTGTCATGACCAAATTTTCTATTGCTTTGAGAGAAATCAGTACATACAAGGAACTTCTTCGGTCCCAGGCAGAGCATATGCTGAATGACCGGTTACTAAACATGCTAAACGTCGATATCCTAGATGTCAAGGAAGCTAGAAGGCGTTTTGAGAAAGCTTCCCTTGTACATGATCAGGCACGTGAGAAGTTTATGTCATTGAGAAAAAGCACTAGGATGGATATTGCCACTATCGTAGAAGAGGATTTGCACAATGCAAGATCCTCATTTGAGGAAGCTCGTTTCAATCTGGTTAGTGCTCTTCATAATGTTGAGGCCAAGAAGAGATTTGATTTTTTGGAGGCTGTCACTGGAGTTATGGATGCTCATCTTCGGTATTATCGACAGGGATATCAGCTATTACAAGAGATGGAGCCTTTCATTATCGAGGTATTGGCTTATACACAAAAAGCAAGAGAAAGTTACAATGAGGAGCAAATTAGTCTTTGTGAAAGAATGTTGGAGTACAAAAAACATGTTCATCATGAAAGTATGTTGTCCTTGAATGGTCCTTATGGTTCTCCTTGTAGAGATGGTCCAGTGCATCCTTTTTCTAGGATATCAGATAAAGTGGCAGATGCTGTAACAGAATCTGCTGAAAATGGAAAGGTTCAAATCATTCGACAAGGATATCTTTCAAAACGGTCCTCAAATTTGAGGGGTGACTGGAAGAGAAGGTATTTTGTTCTTGATAGTCGCGGAATGCTTTACTACTTTCGTAAACCATGGAGTGGATTAAACAGTGGCAATCAATCATCTTTACACAGAAACTGTGCCACTGAAAATAGTGCTGGAATTTTGAGTCGCCTCCTTTCTTCACATTACCATGGACTTATCCCTGATGAAAAATCTGTAGCACGTCATACAGTGAACCTGCTCACATCAACAATCAAGATTGATGCTGAACAGTCAGATTTAAGGTTCTGCTTCAGGATTATTTCACCATCAAAGAGTTATACATTGCAGGCAGAAAATGCCCTGGACCAGATGGATTGGATGGAAAAGATAACTGGTGTAATTGCCACCTTATTGAGTGCACAAACACTGTCAGATGACTCAGAAAGCGGTGACAGCTACTCTGCCAACAAGACTTATTTGTTAAAAGGTTCTCCAGATGATGATCATGCAGTGAGTGGGGATTCTATAAAAAATGAAAAGCCAATTGATGTTCTTAGAAAGGTTAGCGGGAATGACAAATGTGCTGATTGTGGTAAACCTGATCCAGATTGGGCATCCTTAAACCTTGGCATCCTTATATGCATTGAATGTTCCGGTGTTCACCGTAATCTTGGTGTACATATATCAAAAGTAAGATCACTGACCCTTGATGTAAAAGTATGGGATTCTGCAGTGTTAACCATGTTTCAGTGCTTGGGGAATCTCTTTGCAAACTCAGTTTGGGAGGAACTGTTGCATTCGACAAGTACATCACAGACTGATGACACTCCTGATGGTTCATCCAAGACACACAAAAAGTTATTTCATGCAAGAAAACCAGCACATGATGATGCTATTTCACTAAAGGAGAGGTTCATTCATGCAAAGTATGCTGCAAAAGTCTTTGTTCGCCGGATAACAAATAACAACCGTCTCCTTTCAACGGCACAGCAGGTGGTGGAAAGCATCAGTGCCAATGACAAGAAAGCAGTGTACAGGCACATTGTGAAGTCAGAAGTGAATCTCAATGCTATTATTAGTGGGAAAGCAGGCTTTTCTTCCAACACGCCTTCTTCAATTAATCCAAACATATCATGTGAAAGTAAGACTCCACAAGTAGAGGATATACAAGATGGTTCTAGTGTGCTTCACCTGGCATGCATAATTAGTGATTCTGCAATGGTAGAGCTGCTCCTACAGTATGGTGCAGACATAAATGCTATTGATTCTAGAGGGAGGACACCTCTACATTACAGCACTATGAGAGGGAAGAATGCAACTGCAAGAGTGCTTATTACAAGGGGGGCCAATCCACTTGCCGTAGACAAAGAAGGCAACACTCCTTTTAAGCCTGCAACGGAACCTGACACTGCAGGCAAAGAAACTCTTGCTCTAAACCAGCAAATCGCATGCCCTCAAAACTTAATAGAAAAATGA
Predicted protein sequences of Glyma04g37780
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g37780.1 sequence type=predicted peptide gene model=Glyma04g37780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MNFSKLNDSPMFRQQLQCMEESSESLRSRCFKFYKGCRKYTEGLGEAYDGDIAFASALENFGGGHNDPLFVTLGGPVMTKFSIALREISTYKELLRSQAEHMLNDRLLNMLNVDILDVKEARRRFEKASLVHDQAREKFMSLRKSTRMDIATIVEEDLHNARSSFEEARFNLVSALHNVEAKKRFDFLEAVTGVMDAHLRYYRQGYQLLQEMEPFIIEVLAYTQKARESYNEEQISLCERMLEYKKHVHHESMLSLNGPYGSPCRDGPVHPFSRISDKVADAVTESAENGKVQIIRQGYLSKRSSNLRGDWKRRYFVLDSRGMLYYFRKPWSGLNSGNQSSLHRNCATENSAGILSRLLSSHYHGLIPDEKSVARHTVNLLTSTIKIDAEQSDLRFCFRIISPSKSYTLQAENALDQMDWMEKITGVIATLLSAQTLSDDSESGDSYSANKTYLLKGSPDDDHAVSGDSIKNEKPIDVLRKVSGNDKCADCGKPDPDWASLNLGILICIECSGVHRNLGVHISKVRSLTLDVKVWDSAVLTMFQCLGNLFANSVWEELLHSTSTSQTDDTPDGSSKTHKKLFHARKPAHDDAISLKERFIHAKYAAKVFVRRITNNNRLLSTAQQVVESISANDKKAVYRHIVKSEVNLNAIISGKAGFSSNTPSSINPNISCESKTPQVEDIQDGSSVLHLACIISDSAMVELLLQYGADINAIDSRGRTPLHYSTMRGKNATARVLITRGANPLAVDKEGNTPFKPATEPDTAGKETLALNQQIACPQNLIEK*