Glyma04g37650 - SoyBase

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Report for Sequence Feature Glyma04g37650

Feature Type:	gene_model
Chromosome:	Gm04
Start:	44026416
stop:	44028122
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g37650

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G50900	AT	Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein \| chr5:20705051-20706718 REVERSE LENGTH=555	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
PTHR23315	Panther	BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING	JGI		ISS
UniRef100_Q9FI58	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Armadillo/beta-catenin-like repeat-containing protein n=1 Tax=Arabidopsis thaliana RepID=Q9FI58_ARATH	SoyBase	E_val: 0	ISS
UniRef100_UPI00023394FB	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023394FB related cluster n=1 Tax=unknown RepID=UPI00023394FB	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g37650

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g37650

Paralog	Evidence	Comments
Glyma06g17440	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g37650 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g199500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g37650

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g37650

Limit To All Plant Sequences

>Glyma04g37650.1   sequence type=CDS   gene model=Glyma04g37650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAGATTCAACAGAAACAGATGCTATCAGCGATTCCCTTGAGCTTCTGAGTACCTTTCTGGACTCGGAGCTCCCAAGCGTGAGAAACTTCAAAGGGAAATGGTCACTCGCCCGAGTCAAACTCACCCAACTCCAAACCCACCTCACCGATTTCTCCGCCGAGTTCCCCAACGCCTCCACCACAAACCCCCTCTCCCTCCACCTCCTCCACTCAATCTTCAAAACCCTAAACGACGCCGTTTCGCTCTCCCGCTCATGCCAACCCCAAACCCTCCCAAACGGAAAACTCAAAACCCAAAGCGACCTCGACTCCCTCCTCGCCACCCTCGACCGCCACGTCAGCGACTGCGACATTCTCTTCCGCAGCGGCCTCCTCCTCGAAAACGACGCCGTTTCCGTTTCCGTTTCCGTTTCATCGAAACGCGAAGCCATCCGCTCCGAATCACGTAACCTAATAACCCGTCTTCAAATCGGGTCGCCCGAGTCCAAAGCCTCCGCCATGGACTCCTTACTGGGCCTTCTCCAAGAAGACGACAAAAACGTGACCATCGCGGTGGCCCAGGGAGTCGTTCCCGTGCTCGTGCGCCTACTCGATTCCCCCCCCTCCGACACAAAAGAGAAAACCGTCGCTGCCATCTCAAAAGTCTCCACCGTGGAAAGCGCGAAGAGCGTGCTTCTCGCGGAGGGCTTGCTCCTTCTCAACCACTTGCTTAGGGTTTTAGATTCCGGAAGCGGGTTCGCTATTGAGAAAGCATGCATTGCGCTTCGGGCGCTGAGTTTGACGAAGGAGAACGCTAGGGCGATTGGCTCTCGCGGCGGAATCTCGTCGCTTTTGGAGATTTGCCAGGCTGGCACCCCTGGTGCACAGGCTTCTGCCGCCGCCGTGCTGCGCAACCTCGCCGCGTTTGAGGAAATTAGAGATAATTTTGTTGAGGAGAACGCGGTGGTGGTTCTGATTGCGTTGGCCTCCTCCGGAACCGCGGTGGCGCGTGAAAACGCGGTAGGGTGTTTGTCTAATTTGATTAATTCGGATTCTTCGTCGGAGGAGACCGAGGGTTTGTCGAATTTGAGGATTACGGTGGTGAAAGAAGGTGGTGTTGAGTGTTTGAAGAATTACTGGGATTCAGGGACTCAAATTCAGAGTCTTGAAGTTGCGGTTGTAATGTTGAGACATTTGGCTGAAAGTGGTCCAATTGGTGAAGTTCTTGTTGGTGAAGGTTTTGTTCAGAGGCTTGTTGGGGTGCTGAATCGTGAGGTTTTGGCGGTTCGGATTGCGGCGGCGAGGGCGGTTTACGCGTTGGGATTGAACAGTGGGAGGGCGAGGAAGGAGATGGGGGAATTGGGGTGCGTTTTAGGTTTGATTAAAATGTTAGATGGGAAGGGTGTGGAGGAAAAAGAAGCTTCTGCAATGGCATTGTCGGTGCTGCTGATGCACCCGGCGAATCGGAGGGTTTTCCGCAAGGACGAAAGAGGGGTTGTGAGTGCAGTTCATCTCTTGAACCCTTCGTTGCAGGGGTTGGATAAGAAGTACCCTGTTTCGTTGCTCGCTTTGCTTGTTCATTCCAAGAGTTGCAGGAAGCAAATGGTGGCTGCTGGAGCCTGTGTATATACGCAGAAGCTTGTTGAGATGGATGTTCCCGGGTCGAAGAAATTCTTGGAGAGCCTCGGGCGTGGTAAGATTTGGGGTGTTTTTGCTAGACCCTAG

Predicted protein sequences of Glyma04g37650

Limit To All Plant Sequences

>Glyma04g37650.1   sequence type=predicted peptide   gene model=Glyma04g37650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKDSTETDAISDSLELLSTFLDSELPSVRNFKGKWSLARVKLTQLQTHLTDFSAEFPNASTTNPLSLHLLHSIFKTLNDAVSLSRSCQPQTLPNGKLKTQSDLDSLLATLDRHVSDCDILFRSGLLLENDAVSVSVSVSSKREAIRSESRNLITRLQIGSPESKASAMDSLLGLLQEDDKNVTIAVAQGVVPVLVRLLDSPPSDTKEKTVAAISKVSTVESAKSVLLAEGLLLLNHLLRVLDSGSGFAIEKACIALRALSLTKENARAIGSRGGISSLLEICQAGTPGAQASAAAVLRNLAAFEEIRDNFVEENAVVVLIALASSGTAVARENAVGCLSNLINSDSSSEETEGLSNLRITVVKEGGVECLKNYWDSGTQIQSLEVAVVMLRHLAESGPIGEVLVGEGFVQRLVGVLNREVLAVRIAAARAVYALGLNSGRARKEMGELGCVLGLIKMLDGKGVEEKEASAMALSVLLMHPANRRVFRKDERGVVSAVHLLNPSLQGLDKKYPVSLLALLVHSKSCRKQMVAAGACVYTQKLVEMDVPGSKKFLESLGRGKIWGVFARP*

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