Glyma04g37620 - SoyBase

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Report for Sequence Feature Glyma04g37620

Feature Type:	gene_model
Chromosome:	Gm04
Start:	43989289
stop:	43993031
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g37620

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G50870	AT	Annotation by Michelle Graham. TAIR10: ubiquitin-conjugating enzyme 27 \| chr5:20699626-20700998 REVERSE LENGTH=192	SoyBase	E_val: 2.00E-111	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0006635	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation	SoyBase	N/A	ISS
GO:0043161	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0043248	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasome assembly	SoyBase	N/A	ISS
GO:0051788	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to misfolded protein	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
GO:0016881	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acid-amino acid ligase activity	SoyBase	N/A	ISS
KOG0418	KOG	Ubiquitin-protein ligase	JGI		ISS
PTHR24067	Panther	UBIQUITIN-CONJUGATING ENZYME E2	JGI		ISS
PTHR24067:SF28	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00179	PFAM	Ubiquitin-conjugating enzyme	JGI		ISS
PF00627	PFAM	UBA/TS-N domain	JGI		ISS
UniRef100_G7J3B4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin carrier protein n=2 Tax=Medicago truncatula RepID=G7J3B4_MEDTR	SoyBase	E_val: 3.00E-126	ISS
UniRef100_UPI0001890C97	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0001890C97 related cluster n=1 Tax=unknown RepID=UPI0001890C97	SoyBase	E_val: 2.00E-137	ISS

Expression Patterns of Glyma04g37620

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g37620 not represented in the dataset	Glyma04g37620 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g37620

Paralog	Evidence	Comments
Glyma06g17470	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g37620 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g199200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g37620

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g37620

Limit To All Plant Sequences

>Glyma04g37620.5   sequence type=transcript   gene model=Glyma04g37620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GACACAACACAACATAAGCTTTATTCTTTTTTCTTCGCTTCTTCTGTACAGCACCCAAGTTTTCACGATTTGTTGTTCTCCCCGTCTGTGACTCACTGCCTAGGGTTTGGTTAATCGGTGACAGATTGAAGATGATAGACCTTGCGCGCGTGCAGAAGGAGCTCGTGGAATGCAGCAAGGACGCGGAGGGATCGGGCATCAAAGTCTGCCCCAAAAGCGACAACCTTGTTCTCTTGATCGGCACCATTCCTGGCCCTGTCGGAACTCCTTATGAAGGGGGCATTTTCCAGATTGATATCACATTGCCAGATGGGTACCCGTTTGAACCCCCCAAGATGAAGTTTAAAACCAAAGTTTGGCATCCTAATATCAGCAGCCAAAGTGGAGCTATTTGCCTGGATATCTTGAAGGACCAGTGGAGCCCAGCACTCACTCTGAAGACTGCACTTCTTTCTGTGCAAGCACTTCTCTCTGCTCCACAGCCTGATGATCCTCAAGATGCCGTGGTGGCACAGCAGTATCTGAAAGACTATCAGACATTTGTTAACACTGCTCGCTACTGGACAGAAAGTTTTGCCAAGGAATCGTCTCGCGGGATTGAAGACAAGGTACAGAAACTCGTTGAGATGGGATTTCCAGAAGCTCAAGTAAGGAGCATTTTGGAAGCTGTTGGTGGTGATGAAAACTTGGCTCTTGAAAGGTTGCTGTAGATCATGGTCAAGTTTAGGATGACATGTCTCCATAATATGATGGAACCATATAGACAAAAAGTTTAAATTGAATATAGAGTCATATAAATCTACTTGGCACATCGTATAGTCCTTTTGTTTTACTCTGCCTTTTTTTTCTCCTTGGATACTACGGTACTCGACTATTTCCTAGTGATTATATCCGTTATGAAATTAAATACCTTATTGCCAAGGTTTCTGCAATTCTGCTTCACGGATGAATTATTTAGTTACTGCGTTGATCGGTGTATTAAGCAGGTTTACGAGACTCAAGTGGATCGAAGTGTTTGTTGAGGATGAAAGGC

>Glyma04g37620.6   sequence type=transcript   gene model=Glyma04g37620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GACACAACACAACATAAGCTTTATTCTTTTTTCTTCGCTTCTTCTGTACAGCACCCAAGGTGAGTTAGTGACTGAACAAGGAACGCCTTCTTCTTCTTCTTCTTCTTCTTCTTCGTATCGTTGACATTTGTTTTTCAGTTTTCACGATTTGTTGTTCTCCCCGTCTGTGACTCACTGCCTAGGGTTTGGTTAATCGGTGACAGATTGAAGATGATAGACCTTGCGCGCGTGCAGAAGGAGCTCGTGGAATGCAGCAAGGACGCGGAGGGATCGGGCATCAAAGTCTGCCCCAAAAGCGACAACCTTGTTCTCTTGATCGGCACCATTCCTGGCCCTGTCGGAACTCCTTATGAAGGGGGCATTTTCCAGATTGATATCACATTGCCAGATGGGTACCCGTTTGAACCCCCCAAGATGAAGTTTAAAACCAAAGTTTGGCATCCTAATATCAGCAGCCAAAGTGGAGCTATTTGCCTGGATATCTTGAAGGACCAGTGGAGCCCAGCACTCACTCTGAAGACTGCACTTCTTTCTGTGCAAGCACTTCTCTCTGCTCCACAGCCTGATGATCCTCAAGATGCCGTGGTGGCACAGCAGTATCTGAAAGACTATCAGACATTTGTTAACACTGCTCGCTACTGGACAGAAAGTTTTGCCAAGGAATCGTCTCGCGGGATTGAAGACAAGGTACAGAAACTCGTTGAGATGGGATTTCCAGAAGCTCAAGTAAGGAGCATTTTGGAAGCTGTTGGTGGTGATGAAAACTTGGCTCTTGAAAGGTTGCTGTAGATCATGGTCAAGTTTAGGATGACATGTCTCCATAATATGATGGAACCATATAGACAAAAAGTTTAAATTGAATATAGAGTCATATAAATCTACTTGGCACATCGTATAGTCCTTTTGTTTTACTCTGCCTTTTTTTTCTCCTTGGATACTACGGTACTCGACTATTTCCTAGTGATTATATCCGTTATGAAATTAAATACCTTATTGCCAAGGTTTCTGCAATTCTGCTTCACGGATGAATTATTTAGTTACTGCGTTGATCGGTGTATTAAGCAGGTTTACGAGACTCAAGTGGATCGAAGTGTTTGTTGAGGATGAAAGGC

>Glyma04g37620.7   sequence type=transcript   gene model=Glyma04g37620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GACACAACACAACATAAGCTTTATTCTTTTTTCTTCGCTTCTTCTGTACAGCACCCAAGGGTTTGGTTAATCGGTGACAGATTGAAGATGATAGACCTTGCGCGCGTGCAGAAGGAGCTCGTGGAATGCAGCAAGGACGCGGAGGGATCGGGCATCAAAGTCTGCCCCAAAAGCGACAACCTTGTTCTCTTGATCGGCACCATTCCTGGCCCTGTCGGAACTCCTTATGAAGGGGGCATTTTCCAGATTGATATCACATTGCCAGATGGGTACCCGTTTGAACCCCCCAAGATGAAGTTTAAAACCAAAGTTTGGCATCCTAATATCAGCAGCCAAAGTGGAGCTATTTGCCTGGATATCTTGAAGGACCAGTGGAGCCCAGCACTCACTCTGAAGACTGCACTTCTTTCTGTGCAAGCACTTCTCTCTGCTCCACAGCCTGATGATCCTCAAGATGCCGTGGTGGCACAGCAGTATCTGAAAGACTATCAGACATTTGTTAACACTGCTCGCTACTGGACAGAAAGTTTTGCCAAGGAATCGTCTCGCGGGATTGAAGACAAGGTACAGAAACTCGTTGAGATGGGATTTCCAGAAGCTCAAGTAAGGAGCATTTTGGAAGCTGTTGGTGGTGATGAAAACTTGGCTCTTGAAAGGTTGCTGTAGATCATGGTCAAGTTTAGGATGACATGTCTCCATAATATGATGGAACCATATAGACAAAAAGTTTAAATTGAATATAGAGTCATATAAATCTACTTGGCACATCGTATAGTCCTTTTGTTTTACTCTGCCTTTTTTTTCTCCTTGGATACTACGGTACTCGACTATTTCCTAGTGATTATATCCGTTATGAAATTAAATACCTTATTGCCAAGGTTTCTGCAATTCTGCTTCACGGATGAATTATTTAGTTACTGCGTTGATCGGTGTATTAAGCAGGTTTACGAGACTCAAGTGGATCGAAGTGTTTGTTGAGGATGAAAGGC

Coding sequences of Glyma04g37620

Limit To All Plant Sequences

>Glyma04g37620.1   sequence type=CDS   gene model=Glyma04g37620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATAGACCTTGCGCGCGTGCAGAAGGAGCTCGTGGAATGCAGCAAGGACGCGGAGGGATCGGGCATCAAAGTCTGCCCCAAAAGCGACAACCTTGTTCTCTTGATCGGCACCATTCCTGGCCCTGTCGGAACTCCTTATGAAGGGGGCATTTTCCAGATTGATATCACATTGCCAGATGGGTACCCGTTTGAACCCCCCAAGATGAAGTTTAAAACCAAAGTTTGGCATCCTAATATCAGCAGCCAAAGTGGAGCTATTTGCCTGGATATCTTGAAGGACCAGTGGAGCCCAGCACTCACTCTGAAGACTGCACTTCTTTCTGTGCAAGCACTTCTCTCTGCTCCACAGCCTGATGATCCTCAAGATGCCGTGGTGGCACAGCAGTATCTGAAAGACTATCAGACATTTGTTAACACTGCTCGCTACTGGACAGAAAGTTTTGCCAAGGAATCGTCTCGCGGGATTGAAGACAAGGTACAGAAACTCGTTGAGATGGGATTTCCAGAAGCTCAAGTAAGGAGCATTTTGGAAGCTGTTGGTGGTGATGAAAACTTGGCTCTTGAAAGGTTGCTGTAG

>Glyma04g37620.5   sequence type=CDS   gene model=Glyma04g37620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATAGACCTTGCGCGCGTGCAGAAGGAGCTCGTGGAATGCAGCAAGGACGCGGAGGGATCGGGCATCAAAGTCTGCCCCAAAAGCGACAACCTTGTTCTCTTGATCGGCACCATTCCTGGCCCTGTCGGAACTCCTTATGAAGGGGGCATTTTCCAGATTGATATCACATTGCCAGATGGGTACCCGTTTGAACCCCCCAAGATGAAGTTTAAAACCAAAGTTTGGCATCCTAATATCAGCAGCCAAAGTGGAGCTATTTGCCTGGATATCTTGAAGGACCAGTGGAGCCCAGCACTCACTCTGAAGACTGCACTTCTTTCTGTGCAAGCACTTCTCTCTGCTCCACAGCCTGATGATCCTCAAGATGCCGTGGTGGCACAGCAGTATCTGAAAGACTATCAGACATTTGTTAACACTGCTCGCTACTGGACAGAAAGTTTTGCCAAGGAATCGTCTCGCGGGATTGAAGACAAGGTACAGAAACTCGTTGAGATGGGATTTCCAGAAGCTCAAGTAAGGAGCATTTTGGAAGCTGTTGGTGGTGATGAAAACTTGGCTCTTGAAAGGTTGCTGTAG

>Glyma04g37620.6   sequence type=CDS   gene model=Glyma04g37620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATAGACCTTGCGCGCGTGCAGAAGGAGCTCGTGGAATGCAGCAAGGACGCGGAGGGATCGGGCATCAAAGTCTGCCCCAAAAGCGACAACCTTGTTCTCTTGATCGGCACCATTCCTGGCCCTGTCGGAACTCCTTATGAAGGGGGCATTTTCCAGATTGATATCACATTGCCAGATGGGTACCCGTTTGAACCCCCCAAGATGAAGTTTAAAACCAAAGTTTGGCATCCTAATATCAGCAGCCAAAGTGGAGCTATTTGCCTGGATATCTTGAAGGACCAGTGGAGCCCAGCACTCACTCTGAAGACTGCACTTCTTTCTGTGCAAGCACTTCTCTCTGCTCCACAGCCTGATGATCCTCAAGATGCCGTGGTGGCACAGCAGTATCTGAAAGACTATCAGACATTTGTTAACACTGCTCGCTACTGGACAGAAAGTTTTGCCAAGGAATCGTCTCGCGGGATTGAAGACAAGGTACAGAAACTCGTTGAGATGGGATTTCCAGAAGCTCAAGTAAGGAGCATTTTGGAAGCTGTTGGTGGTGATGAAAACTTGGCTCTTGAAAGGTTGCTGTAG

>Glyma04g37620.7   sequence type=CDS   gene model=Glyma04g37620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATAGACCTTGCGCGCGTGCAGAAGGAGCTCGTGGAATGCAGCAAGGACGCGGAGGGATCGGGCATCAAAGTCTGCCCCAAAAGCGACAACCTTGTTCTCTTGATCGGCACCATTCCTGGCCCTGTCGGAACTCCTTATGAAGGGGGCATTTTCCAGATTGATATCACATTGCCAGATGGGTACCCGTTTGAACCCCCCAAGATGAAGTTTAAAACCAAAGTTTGGCATCCTAATATCAGCAGCCAAAGTGGAGCTATTTGCCTGGATATCTTGAAGGACCAGTGGAGCCCAGCACTCACTCTGAAGACTGCACTTCTTTCTGTGCAAGCACTTCTCTCTGCTCCACAGCCTGATGATCCTCAAGATGCCGTGGTGGCACAGCAGTATCTGAAAGACTATCAGACATTTGTTAACACTGCTCGCTACTGGACAGAAAGTTTTGCCAAGGAATCGTCTCGCGGGATTGAAGACAAGGTACAGAAACTCGTTGAGATGGGATTTCCAGAAGCTCAAGTAAGGAGCATTTTGGAAGCTGTTGGTGGTGATGAAAACTTGGCTCTTGAAAGGTTGCTGTAG

Predicted protein sequences of Glyma04g37620

Limit To All Plant Sequences

>Glyma04g37620.1   sequence type=predicted peptide   gene model=Glyma04g37620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIDLARVQKELVECSKDAEGSGIKVCPKSDNLVLLIGTIPGPVGTPYEGGIFQIDITLPDGYPFEPPKMKFKTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPQPDDPQDAVVAQQYLKDYQTFVNTARYWTESFAKESSRGIEDKVQKLVEMGFPEAQVRSILEAVGGDENLALERLL*

>Glyma04g37620.5   sequence type=predicted peptide   gene model=Glyma04g37620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIDLARVQKELVECSKDAEGSGIKVCPKSDNLVLLIGTIPGPVGTPYEGGIFQIDITLPDGYPFEPPKMKFKTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPQPDDPQDAVVAQQYLKDYQTFVNTARYWTESFAKESSRGIEDKVQKLVEMGFPEAQVRSILEAVGGDENLALERLL*

>Glyma04g37620.6   sequence type=predicted peptide   gene model=Glyma04g37620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIDLARVQKELVECSKDAEGSGIKVCPKSDNLVLLIGTIPGPVGTPYEGGIFQIDITLPDGYPFEPPKMKFKTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPQPDDPQDAVVAQQYLKDYQTFVNTARYWTESFAKESSRGIEDKVQKLVEMGFPEAQVRSILEAVGGDENLALERLL*

>Glyma04g37620.7   sequence type=predicted peptide   gene model=Glyma04g37620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIDLARVQKELVECSKDAEGSGIKVCPKSDNLVLLIGTIPGPVGTPYEGGIFQIDITLPDGYPFEPPKMKFKTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPQPDDPQDAVVAQQYLKDYQTFVNTARYWTESFAKESSRGIEDKVQKLVEMGFPEAQVRSILEAVGGDENLALERLL*

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