Glyma04g37520 - SoyBase

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Report for Sequence Feature Glyma04g37520

Feature Type:	gene_model
Chromosome:	Gm04
Start:	43926535
stop:	43929580
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g37520

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G23660	AT	Annotation by Michelle Graham. TAIR10: homolog of Medicago truncatula MTN3 \| chr5:7971936-7973796 REVERSE LENGTH=285	SoyBase	E_val: 3.00E-97	ISS
GO:0015770	GO-bp	Annotation by Michelle Graham. GO Biological Process: sucrose transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005887	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0008515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sucrose transmembrane transporter activity	SoyBase	N/A	ISS
GO:0051119	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sugar transmembrane transporter activity	SoyBase	N/A	ISS
KOG1623	KOG	Multitransmembrane protein	JGI		ISS
PTHR10791	Panther	STROMAL CELL PROTEIN/NODULIN MTN3-RELATED	JGI		ISS
PF03083	PFAM	MtN3/saliva family	JGI		ISS
UniRef100_A7XWR9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: N3 protein n=1 Tax=Glycine max RepID=A7XWR9_SOYBN	SoyBase	E_val: 1.00E-170	ISS
UniRef100_I1JXM9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JXM9_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma04g37520

Locus	Gene Symbol	Protein Name
	SWEET5	sucrose transporter gene 5
	SWEET5	sucrose effluxer gene 5

Expression Patterns of Glyma04g37520

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g37520

Paralog	Evidence	Comments
Glyma06g17530	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g37520 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g198500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g37520

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g37520

Limit To All Plant Sequences

>Glyma04g37520.1   sequence type=CDS   gene model=Glyma04g37520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCATTCACCACGAAACTTGGGCTTTCGTTTTCGGTCTTCTAGGCAACGTGATCTCCTTTATGGTGTTCCTTGCTCCATTACCAACTTTTTACCAAATCTACAAGAAGAAATCATCCGAAGGGTTTCAATCACTACCTTATGTTGTTGCACTGTTCAGTTCAATGCTCTGGATCTATTATGCATTTGTCAAAAAGGATGCTAGCCTCCTTCTCATTACTATTAACTCCTTTGGATGTGTGATAGAGACAATTTACCTAGCCATCTTCCTTGTTTACGCCCCAAGTAAAACCAGGCTTTGGACCATCAAGCTTCTTCTCATGTTGAATGTTTTTGGGTTCGGAGCGATGCTTCTTTCAACCCTATACCTTACAACGGGTTCCAAACGTCTTACTGTGATAGGATGGATTTGTCTTGTTTTCAACATAAGCGTTTTTGCTGCTCCTCTTTGCATTATGAAACGTGTCATAAAGACGAAGAGCGTGGAATTTATGCCCTTCAGTTTGTCCTTCTCTTTGACCATAAATGCTGTTATGTGGTTCTTCTATGGCCTTCTCCTCAAGGACTACTACATCGCTCTACCAAATACGCTTGGGTTTCTATTCGGCATAATTCAGATGGTGTTGTATTTGATTTATAGAAACGCCAAGAAAGATGAGCCAATGAAATTGGAGGAACTAAATAGTCATATTATTAACGTTGGGAAGCTGAGCAGAATGGAACCCTCTGAGCCGAATCATGCAACAAAAAATGGTACTGTGACTGAGATAACTATTGAGGATCCAAATGGAAAAGAAACAGAAGAGGGAAACTTGAAGAACATCATGAATTCGGCTAGCAATGTGTGA

Predicted protein sequences of Glyma04g37520

Limit To All Plant Sequences

>Glyma04g37520.1   sequence type=predicted peptide   gene model=Glyma04g37520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAIHHETWAFVFGLLGNVISFMVFLAPLPTFYQIYKKKSSEGFQSLPYVVALFSSMLWIYYAFVKKDASLLLITINSFGCVIETIYLAIFLVYAPSKTRLWTIKLLLMLNVFGFGAMLLSTLYLTTGSKRLTVIGWICLVFNISVFAAPLCIMKRVIKTKSVEFMPFSLSFSLTINAVMWFFYGLLLKDYYIALPNTLGFLFGIIQMVLYLIYRNAKKDEPMKLEELNSHIINVGKLSRMEPSEPNHATKNGTVTEITIEDPNGKETEEGNLKNIMNSASNV*

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