Glyma04g37440 - SoyBase

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Report for Sequence Feature Glyma04g37440

Feature Type:	gene_model
Chromosome:	Gm04
Start:	43824204
stop:	43825727
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g37440

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G50720	AT	Annotation by Michelle Graham. TAIR10: HVA22 homologue E \| chr5:20633442-20634502 REVERSE LENGTH=116	SoyBase	E_val: 6.00E-50	ISS
GO:0009269	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to desiccation	SoyBase	N/A	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0042538	GO-bp	Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR12300	Panther	HVA22-LIKE PROTEINS	JGI		ISS
PTHR12300:SF11	Panther	HVA22-LIKE PROTEIN	JGI		ISS
PF03134	PFAM	TB2/DP1, HVA22 family	JGI		ISS
UniRef100_G7J3D8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: HVA22-like protein e n=1 Tax=Medicago truncatula RepID=G7J3D8_MEDTR	SoyBase	E_val: 5.00E-69	ISS
UniRef100_I1JXM1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JXM1_SOYBN	SoyBase	E_val: 1.00E-99	ISS

Expression Patterns of Glyma04g37440

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g37440

Paralog	Evidence	Comments
Glyma06g17610	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g37440 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g197600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g37440

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g37440

Limit To All Plant Sequences

>Glyma04g37440.2   sequence type=CDS   gene model=Glyma04g37440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCAAGTTGTGGACCTTGATCATCCAGCTTCATTCTATTGCTGGGCCGGTTGTGACGTTATTGTACCCTTTATATGCATCGGTGGTAGCAATAGAGAGTCAGTCCAAGTTGGATGACGAGCAGTGGCTAGCTTATTGGATCATCTATTCGTTCCTCACCCTTACGGAAATGGTTCTTCAACCTATCTTAGAGTGGATACCAATTTGGTACGATGTGAAACTATTGACGGTGGCATGGCTGGTGTTACCCCAGTTCGCAGGAGCTGCGTACTTGTATGAAAGGTTCGTGAGAGAGCATATAAGGAAATACATAACGGAGAAGGAGTATCTCTATGTCAACCACCAGCAACAAAGCAAAAAGTCTCCCAATAACGGGGGCAAGGCCAAGAAGTTCGTTGAATTCGTCACACCCAAGAAAGTGAGTTTTAATTAG

Predicted protein sequences of Glyma04g37440

Limit To All Plant Sequences

>Glyma04g37440.2   sequence type=predicted peptide   gene model=Glyma04g37440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKLWTLIIQLHSIAGPVVTLLYPLYASVVAIESQSKLDDEQWLAYWIIYSFLTLTEMVLQPILEWIPIWYDVKLLTVAWLVLPQFAGAAYLYERFVREHIRKYITEKEYLYVNHQQQSKKSPNNGGKAKKFVEFVTPKKVSFN*

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