Glyma04g37380 - SoyBase

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Report for Sequence Feature Glyma04g37380

Feature Type:	gene_model
Chromosome:	Gm04
Start:	43718581
stop:	43726881
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g37380

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G63520	AT	Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364), FIST C domain (InterPro:IPR019494), FIST domain, N-terminal (InterPro:IPR013702); Has 137 Blast hits to 137 proteins in 56 species: Archae - 0; Bacteria - 88; Metazoa - 6; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). \| chr5:25426300-25429093 REVERSE LENGTH=519	SoyBase	E_val: 1.00E-134	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF00646	PFAM	F-box domain	JGI		ISS
PF10442	PFAM	FIST C domain	JGI		ISS
UniRef100_G7J3V2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F-box/LRR-repeat protein n=1 Tax=Medicago truncatula RepID=G7J3V2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JXL3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JXL3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g37380

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g37380

Paralog	Evidence	Comments
Glyma06g17710	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g37380 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g196900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g37380

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g37380

Limit To All Plant Sequences

>Glyma04g37380.2   sequence type=transcript   gene model=Glyma04g37380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CATTCAGCATCATTTGGGAGGTGCAGATTCAAATGCGGTGGCTGTAGTGATAGATTTTTGTTGGGCCAAGGCCCAAGATGTACCCCATGTGCGAAACGTTTTGCCGTTTCGTCCCCGTTGCGTTTTGTTGGAGCGTGATGTTGGGGTAGGTGGTGGTGGCGCCGAACCGCAATGGAGAAGCCATCGTCGTCGTCGTCGTCGCGAAGAAAATCGAGCACGAAGGTGAAAGCTTCAACCGATGCGAACACGAACCTGAGCATGCTCAACGAGGACCTTCTCCAGAACATTCTAGCGAGGCTTCCTGCTCTGCATTTCGCTTCCGCAGCTTGCGTCAGCAAATCATGGAACTCTCTCTGCAATCGCATCCTCACTCGCCCCAAACTCTCTTCCGCGATTTCTCTCAACCCTTCGCTCCCCGATGCTGTCAACGAGGTTGTTCACAAGGTTCTTTCGGAGCCAATTCGACCCCATTTCGCTATTGCCAATATCGGAACTGGATTCAGCACTGCCAAGACTTTGTGCCTTATTAGACAGTCGTTGGGATCCAATATTCCTGTTATTGTTACCGTTGCGAGTGGTATTATGGGAAGGGATGCTGTAACCGATGAGTTTAAAGAGGTCAAATGGGGTGCCCTTTTTAGTGGCTTTGGCGAGGAATCGTATACGAGGTTTATAAACGAAGGCTTAGTTTTGACTGTTGGGTACTTGCCTGGATTGAAAGTTGAAGCAGTGCCCTTGCGACGGCCGACAAAGACGCAAGCAATATGGGTTGACAATTTCATAAAGGATATTAAGGAATATTCAGCCTCTGTCTCCAGTAGCCCATTCCCTGTTGGGATTATATTGTTTGGAGAAGCAAGCAGTGACATGAAATTGGTTCTGGAGAAATTGGATCATGCCATGCCTATGGACACGGTCATTGTGGGTGATGAGAGAGGCTCCTTTGACTTTGTACACAAAAGTGGGAATGATTCTAGAATCATTTGTAGTAAAAAAGGAAACATAGAAGCTGTTGCTCTTGTATTTGCTCGGGACAGAAACAGGTCTTTGGGAACTATTAGGTTTCATGTTGCATTGTCAAATGGTGTTTCAACTGTGGGTCCCAGATACAAGGCAGCCTCAGTTAAATCAAACAATGCTGATTGTTCAACATGGCTAACTGCTAGGAGGGAAGGGCAACAGGAAAATCTTGATGGTCAGAGTATTCTACTTGATATCAACAATTTGCTGGACAATCATGTTGAGTCTCCTGATTTGCACATTGGGGTAATTAAACATAGGAAATTATCCACTGGAGCAGAGAAGCCAATGCCAAGAACTTGTATTTCATATCATGGAGTTGTGGGGTATGATATAAAACTACTCCTGTGTAGATGTTCTACTTCCTCATCAACGTTAATTTTTCTCTCATTCTCTGGATTCGTTTGAAGAATTATATTTTATTTTTTTAAAAAAAGACTGAATTGGTAGGAAGATATTTTGCTACAACTACCTTTTAGTGTGCTATAGCTTATAAATTATACTTAATAAACCCATTATTCCATCCACTGTCATTTTCAACAGCTGATAATAATTTTGGTTAAGCTAGTTTGAATAATAGGTGATGAATTACAGTTGCTTATAAGCAGATCAATAAACTAAAAGGTATACTAGTCTAAATTTACAAATTTGGTGATGTTGAATTTTTAATGTCCGTCTTAAAAATTCGGTTTATCCTTTAAGGGAATCATGTGTTATGTTGATAAACCATGGCAGGATTGGCAAAGTGTATAATTATATCATTGTACTTCAGATTGGATTTTGAGTGTATGGAACTAGAAGCAATCACTGTT

Coding sequences of Glyma04g37380

Limit To All Plant Sequences

>Glyma04g37380.1   sequence type=CDS   gene model=Glyma04g37380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAAGCCATCGTCGTCGTCGTCGTCGCGAAGAAAATCGAGCACGAAGGTGAAAGCTTCAACCGATGCGAACACGAACCTGAGCATGCTCAACGAGGACCTTCTCCAGAACATTCTAGCGAGGCTTCCTGCTCTGCATTTCGCTTCCGCAGCTTGCGTCAGCAAATCATGGAACTCTCTCTGCAATCGCATCCTCACTCGCCCCAAACTCTCTTCCGCGATTTCTCTCAACCCTTCGCTCCCCGATGCTGTCAACGAGGTTGTTCACAAGGTTCTTTCGGAGCCAATTCGACCCCATTTCGCTATTGCCAATATCGGAACTGGATTCAGCACTGCCAAGACTTTGTGCCTTATTAGACAGTCGTTGGGATCCAATATTCCTGTTATTGTTACCGTTGCGAGTGGTATTATGGGAAGGGATGCTGTAACCGATGAGTTTAAAGAGGTCAAATGGGGTGCCCTTTTTAGTGGCTTTGGCGAGGAATCGTATACGAGGTTTATAAACGAAGGCTTAGTTTTGACTGTTGGGTACTTGCCTGGATTGAAAGTTGAAGCAGTGCCCTTGCGACGGCCGACAAAGACGCAAGCAATATGGGTTGACAATTTCATAAAGGATATTAAGGAATATTCAGCCTCTGTCTCCAGTAGCCCATTCCCTGTTGGGATTATATTGTTTGGAGAAGCAAGCAGTGACATGAAATTGGTTCTGGAGAAATTGGATCATGCCATGCCTATGGACACGGTCATTGTGGGTGATGAGAGAGGCTCCTTTGACTTTGTACACAAAAGTGGGAATGATTCTAGAATCATTTGTAGTAAAAAAGGAAACATAGAAGCTGTTGCTCTTGTATTTGCTCGGGACAGAAACAGGTCTTTGGGAACTATTAGGTTTCATGTTGCATTGTCAAATGGTGTTTCAACTGTGGGTCCCAGATACAAGGCAGCCTCAGTTAAATCAAACAATGCTGATTGTTCAACATGGCTAACTGCTAGGAGGGAAGGGCAACAGGAAAATCTTGATGGTCAGAGTATTCTACTTGATATCAACAATTTGCTGGACAATCATGTTGAGTCTCCTGATTTGCACATTGGGGTAATTAAACATAGGAAATTATCCACTGGAGCAGAGAAGCCAATGCCAAGAACTTGTATTTCATATCATGGAGTTGTGGGAGGTGATGAAGAGTATCTATATGTTGACGGCATTGGCATAAAAACAGGAGATTTCTTTCAGTTCTACTATTCAGATCCAAATATTGCCTTAGCTTCATTAACCAAGGTCCATGATGCCCTCAAGAGTATTAAACTGGAAAAAAAATCCAAGAGTTCCAAGGGTGATGGAGACAACGCTACCAATGTTTTTGGGGGTATTATTTTTGCTTGTTACAGCCGTGGTGAATCCTTCTTTGGACGTCAGAATGTTGATAGCTCCCCTTTCTTGGAGAATTTTCCAGGAGTGCCAGTGTCTGGAATATTTTGTGGTGGAGAAATGGTGCGTCCTTGTACCACTGTGATTGGTCAATGTGAAGGAGCAAGCCCCATTAGTTGCTGTCTGCATGTGTACAGCACTGTCTACTTAGCAATGTCGTATACTCCCCCCTCTGTGGAAGATTAG

>Glyma04g37380.2   sequence type=CDS   gene model=Glyma04g37380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAAGCCATCGTCGTCGTCGTCGTCGCGAAGAAAATCGAGCACGAAGGTGAAAGCTTCAACCGATGCGAACACGAACCTGAGCATGCTCAACGAGGACCTTCTCCAGAACATTCTAGCGAGGCTTCCTGCTCTGCATTTCGCTTCCGCAGCTTGCGTCAGCAAATCATGGAACTCTCTCTGCAATCGCATCCTCACTCGCCCCAAACTCTCTTCCGCGATTTCTCTCAACCCTTCGCTCCCCGATGCTGTCAACGAGGTTGTTCACAAGGTTCTTTCGGAGCCAATTCGACCCCATTTCGCTATTGCCAATATCGGAACTGGATTCAGCACTGCCAAGACTTTGTGCCTTATTAGACAGTCGTTGGGATCCAATATTCCTGTTATTGTTACCGTTGCGAGTGGTATTATGGGAAGGGATGCTGTAACCGATGAGTTTAAAGAGGTCAAATGGGGTGCCCTTTTTAGTGGCTTTGGCGAGGAATCGTATACGAGGTTTATAAACGAAGGCTTAGTTTTGACTGTTGGGTACTTGCCTGGATTGAAAGTTGAAGCAGTGCCCTTGCGACGGCCGACAAAGACGCAAGCAATATGGGTTGACAATTTCATAAAGGATATTAAGGAATATTCAGCCTCTGTCTCCAGTAGCCCATTCCCTGTTGGGATTATATTGTTTGGAGAAGCAAGCAGTGACATGAAATTGGTTCTGGAGAAATTGGATCATGCCATGCCTATGGACACGGTCATTGTGGGTGATGAGAGAGGCTCCTTTGACTTTGTACACAAAAGTGGGAATGATTCTAGAATCATTTGTAGTAAAAAAGGAAACATAGAAGCTGTTGCTCTTGTATTTGCTCGGGACAGAAACAGGTCTTTGGGAACTATTAGGTTTCATGTTGCATTGTCAAATGGTGTTTCAACTGTGGGTCCCAGATACAAGGCAGCCTCAGTTAAATCAAACAATGCTGATTGTTCAACATGGCTAACTGCTAGGAGGGAAGGGCAACAGGAAAATCTTGATGGTCAGAGTATTCTACTTGATATCAACAATTTGCTGGACAATCATGTTGAGTCTCCTGATTTGCACATTGGGGTAATTAAACATAGGAAATTATCCACTGGAGCAGAGAAGCCAATGCCAAGAACTTGTATTTCATATCATGGAGTTGTGGGGTATGATATAAAACTACTCCTGTGTAGATGTTCTACTTCCTCATCAACGTTAATTTTTCTCTCATTCTCTGGATTCGTTTGA

Predicted protein sequences of Glyma04g37380

Limit To All Plant Sequences

>Glyma04g37380.1   sequence type=predicted peptide   gene model=Glyma04g37380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKPSSSSSSRRKSSTKVKASTDANTNLSMLNEDLLQNILARLPALHFASAACVSKSWNSLCNRILTRPKLSSAISLNPSLPDAVNEVVHKVLSEPIRPHFAIANIGTGFSTAKTLCLIRQSLGSNIPVIVTVASGIMGRDAVTDEFKEVKWGALFSGFGEESYTRFINEGLVLTVGYLPGLKVEAVPLRRPTKTQAIWVDNFIKDIKEYSASVSSSPFPVGIILFGEASSDMKLVLEKLDHAMPMDTVIVGDERGSFDFVHKSGNDSRIICSKKGNIEAVALVFARDRNRSLGTIRFHVALSNGVSTVGPRYKAASVKSNNADCSTWLTARREGQQENLDGQSILLDINNLLDNHVESPDLHIGVIKHRKLSTGAEKPMPRTCISYHGVVGGDEEYLYVDGIGIKTGDFFQFYYSDPNIALASLTKVHDALKSIKLEKKSKSSKGDGDNATNVFGGIIFACYSRGESFFGRQNVDSSPFLENFPGVPVSGIFCGGEMVRPCTTVIGQCEGASPISCCLHVYSTVYLAMSYTPPSVED*

>Glyma04g37380.2   sequence type=predicted peptide   gene model=Glyma04g37380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKPSSSSSSRRKSSTKVKASTDANTNLSMLNEDLLQNILARLPALHFASAACVSKSWNSLCNRILTRPKLSSAISLNPSLPDAVNEVVHKVLSEPIRPHFAIANIGTGFSTAKTLCLIRQSLGSNIPVIVTVASGIMGRDAVTDEFKEVKWGALFSGFGEESYTRFINEGLVLTVGYLPGLKVEAVPLRRPTKTQAIWVDNFIKDIKEYSASVSSSPFPVGIILFGEASSDMKLVLEKLDHAMPMDTVIVGDERGSFDFVHKSGNDSRIICSKKGNIEAVALVFARDRNRSLGTIRFHVALSNGVSTVGPRYKAASVKSNNADCSTWLTARREGQQENLDGQSILLDINNLLDNHVESPDLHIGVIKHRKLSTGAEKPMPRTCISYHGVVGYDIKLLLCRCSTSSSTLIFLSFSGFV*

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