SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research


Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma04g37345): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma04g37345): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma04g37345

Feature Type:gene_model
Chromosome:Gm04
Start:43695138
stop:43699687
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g37345
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G63480AT Annotation by Michelle Graham. TAIR10: unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:25417317-25418473 FORWARD LENGTH=189 SoyBaseE_val: 4.00E-52ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0016592GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mediator complex SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1KC19UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KC19_SOYBN SoyBaseE_val: 7.00E-79ISS
UniRef100_Q9FMV4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Mediator of RNA polymerase II transcription subunit 30 n=1 Tax=Arabidopsis thaliana RepID=MED30_ARATH SoyBaseE_val: 2.00E-49ISS

Expression Patterns of Glyma04g37345
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g37345 not represented in the dataset
Glyma04g37345 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g37345
ParalogEvidenceComments
Glyma06g17740 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g37345 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g196600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g37345
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g37345
>Glyma04g37345.1   sequence type=CDS   gene model=Glyma04g37345   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAAGAACAATCTGTGAACGGCACGATGTCTGGGTCCAAAACGACGCAGGAGTTGGCGATGGAAGGGCAGGAGTACTTGGAAGAAACCATAGAGAACGCTTTCCAGATCCTCTCTTCCATGAACGACGAGCTCTGCAACCCCGTTTTATGGTCTACCTCTCCCTCCACCTCCCCCAATGCCGACGCCACTTCCGACAACTCCAACCACCACGCCGACGCCAGTGCCGCCTCTGCCGCCGCCGGAGGCGCCCTCGAAGAGGCCCGCGCCCGATACAAGAAGGCCGTCACCGCGCTTCGCACCATTCTCACTGCCATTCCTACCTCCCAGAAGGAAAAAACATTTGATGCCGGTTCAGCTGCTAGCCCTGCAGATGAAGCTGAAATCGATAAGTTGGAGGAGCGAGCCTCATCTCTAAGAAGGGAGCTTGCCAACAAGAACTTGCACTTGAAGACACTCATAGATCAATTGCGTGATCTTATCACTGATATATCAACATGGCAGAGTCCTTTTTCAACCTGA
Predicted protein sequences of Glyma04g37345
>Glyma04g37345.1   sequence type=predicted peptide   gene model=Glyma04g37345   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEEQSVNGTMSGSKTTQELAMEGQEYLEETIENAFQILSSMNDELCNPVLWSTSPSTSPNADATSDNSNHHADASAASAAAGGALEEARARYKKAVTALRTILTAIPTSQKEKTFDAGSAASPADEAEIDKLEERASSLRRELANKNLHLKTLIDQLRDLITDISTWQSPFST*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo