Glyma04g37260 - SoyBase

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Report for Sequence Feature Glyma04g37260

Feature Type:	gene_model
Chromosome:	Gm04
Start:	43639628
stop:	43642027
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g37260

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G66950	AT	Annotation by Michelle Graham. TAIR10: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein \| chr5:26733333-26735945 FORWARD LENGTH=870	SoyBase	E_val: 2.00E-22	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0030170	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding	SoyBase	N/A	ISS
PTHR14237	Panther	MOLYBDOPTERIN COFACTOR SULFURASE (MOSC)	JGI		ISS
PTHR14237:SF3	Panther	gb def: hypothetical protein [arabidopsis thaliana]	JGI		ISS
UniRef100_G7J3W3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Molybdenum cofactor sulfurase n=1 Tax=Medicago truncatula RepID=G7J3W3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JXK1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JXK1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g37260

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g37260

Paralog	Evidence	Comments
Glyma06g17810	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g37260 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g196000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g37260

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g37260

Limit To All Plant Sequences

>Glyma04g37260.1   sequence type=CDS   gene model=Glyma04g37260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGACTAACAGGCAGGAGCATGAAATTTCAGGAGGATCTGAGGCAACATATCAGGAGATGATAGAAAATGAAGTCAAGGACACTCAGGAAGGCTCAACACACAAATTAATAACTGAGAGCTGCAAATCAAACAGCATGGTTATAAAGAAACGACATACGTTGATTCCTGCTCACATCATAGCTGAAGCCATATCAACTATTGCCGATCTTGACATTAGATGGTCAGGTCCAATCACACCAAAAGAAATGGAATACGTTGAACAATATGTCCTTGCAAAGTATCCAGAATATTCAGGCCTCATGAAAGGAGATGGAAATGGGATAAACTTGTCTAGCTTTATCATCTATGAGGAGCCTTCAGAATCCATGATAGATGATAGGGGAAAGTCACCAAGAGAGTCTTCTACATATTTTTTTGGCAGTAATAATCTCCCTGAAATGGATAGGGCCAAGATCCAGTTGGAGCCATCAAGATTACTAGACATTCTCAACAAGAAATCCTCATTCCTTGGAAGTTTCATCTCTATCCCAGAAATCCAAGCTCGCAATAAGATTTTGAATCATTATGGTTTGCCAGATGAAGAGTACCTTGTTCTCTTCACTCCAAGCTACAAGGATGCCATGATGTTGGTGGGAGAAAGTTACCCTTTTGTTAAGGGAAACTACTACATGACCATTCTTGATCAGGAAGAAGACTACATCAGGGAGTTTGCTTCTTTTAAGGAGTCCAAGGTGATCTCAGCACCCAAGACATGGCTGGATTTGAGGATCAGCGGGTCTCAGCTGAGCCAGAACTTCAGGAGGAGGTGTAAGATCAGCTCAAAGGGCTTGTTTTCCTATCCGGTTGATGCAAATGGAACAATGCATTGGATTTCTGAGGCTCATAGGAACAACTGGCATGTTCTACTTGATGCATCTGCCTTGGTAGTGGGAAAGGATCGGCTACATCTTCTTGCGCTCCACCGCCCGGATTTTGTGATATGTAATCTTGAAAACACTCATTCCAATCCTTCAAGAGTCACTTGCCTCTTAGTGAGAAAGAAATCCTTTGAGGTCTCAGCTACTTCATCTCAGGCAGTTGAATGA

Predicted protein sequences of Glyma04g37260

Limit To All Plant Sequences

>Glyma04g37260.1   sequence type=predicted peptide   gene model=Glyma04g37260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTNRQEHEISGGSEATYQEMIENEVKDTQEGSTHKLITESCKSNSMVIKKRHTLIPAHIIAEAISTIADLDIRWSGPITPKEMEYVEQYVLAKYPEYSGLMKGDGNGINLSSFIIYEEPSESMIDDRGKSPRESSTYFFGSNNLPEMDRAKIQLEPSRLLDILNKKSSFLGSFISIPEIQARNKILNHYGLPDEEYLVLFTPSYKDAMMLVGESYPFVKGNYYMTILDQEEDYIREFASFKESKVISAPKTWLDLRISGSQLSQNFRRRCKISSKGLFSYPVDANGTMHWISEAHRNNWHVLLDASALVVGKDRLHLLALHRPDFVICNLENTHSNPSRVTCLLVRKKSFEVSATSSQAVE*

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