Glyma04g37160 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g37160

Feature Type:	gene_model
Chromosome:	Gm04
Start:	43581771
stop:	43586564
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g37160

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G24880	AT	Annotation by Michelle Graham. TAIR10: unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). \| chr4:12808593-12811218 FORWARD LENGTH=417	SoyBase	E_val: 0	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
KOG3132	KOG	m3G-cap-specific nuclear import receptor (Snurportin1)	JGI		ISS
PTHR13403	Panther	SNURPORTIN1 (RNUT1 PROTEIN) (RNA, U TRANSPORTER 1)	JGI		ISS
PTHR13403:SF6	Panther	SNURPORTIN1 (RNUT1 PROTEIN) (RNA, U TRANSPORTER 1)	JGI		ISS
UniRef100_Q93ZD6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT4g24880/F13M23_20 n=2 Tax=Arabidopsis thaliana RepID=Q93ZD6_ARATH	SoyBase	E_val: 0	ISS
UniRef100_UPI0001BA84A1	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0001BA84A1 related cluster n=1 Tax=unknown RepID=UPI0001BA84A1	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g37160

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g37160

Paralog	Evidence	Comments
Glyma06g17890	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g37160 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g195500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g37160

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g37160

Limit To All Plant Sequences

>Glyma04g37160.2   sequence type=CDS   gene model=Glyma04g37160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACCGCACGATCTCCACCGTCCGTTCAAGCGACCGGCGATCTCCGATCAAGAGCGGCGCAGGGAACAGTCTCTGCTCCGCCAGGCACAGAATCGCCAAGACGCCCAGCGCCACGCGCGCTTCTTGGCCTCAGCCGCACTCTCTCTCCCACCCCAATCCTCCGAACCAGAATCCGAACCAAAACCCGAACCCGAATTCGAACTCGCGGAATTCGAAGCCGCGTCGAAGCTGAAAGCCGTGGAAGCTCGCAAGTGGTTCGCGAAGCAGCTCATGCTCCCCGAGTGGATGATCGATATTCCCAACAACCTCGCTCAAGACTGGTTCGTCTTCGCTCGCCCTTCCGGGAAACGGTGTTTCGTCGTTTCGTGCAACGGAGCGACGATAAGCCGTCTGCGGAACGGTGCCGTTCTGCATCGGTTTCCCTCCGGCTTGCCGAGCGGGGCAAGGAAGAAGGACCCCTCCTACTCTATATTGGACTGCATCTTTCACGAGGCGGATCAAACTTATTACGTTATTGACATGGTTTGTTGGCGGGGTTACCCTCTGTCTGATTGCACCGCGGAGTTTAGGTTCTTCTGGTTGACCTCGAAGCTTGCAGAAACTGATGCCTTTGAACCTCCCTCGCATTATCACAAGTACAGGTTTAGTTTGGTTCCGGTGTTTAATTGTGATTCGAATGGTCTCTATGCTGCTTATTCAGCACCAGTGCCTTATGTCAAAGACGGTCTTCTTTTTTATAACAAGCATGCTCACTATCAGGCAGGAATTACGCCGTTAGCATTAGTTTGGAAGGATGAGAACTGTAGTCAATATGTTTTGGACACAGACAGTAAAGGACAGGTTCCAAACCAACAGCAGGTGGTTTTGGAGCTTCAAGACGATGGAAAACTGACTACCTCGGATGATCCTCCTATGGTATTTGGCTGTTTAGATGGAAGCTTTATACAACAGTCAGGTTTGCATTCAGGATGTCTTCTACGGTTTTCAATTGGAGAGGGAGGATTAGTTTTGATGGATGGGAAGCTTGACAAAGCTGATCTACATTATCTTGGCAAGGCCAATCGAGCTCGTGCCTCTGCTGATAGTTTTTCTAAGGTTATGTTCCAACACAGTGTTCGACACTCTCCCCTCAGAATTGATGGTCTGCTGGAATCTGTCAGTTTACCAGTTGATCAAGAAAGCAAAGCTTGTGATATTGAGATGGATGGTTGA

Predicted protein sequences of Glyma04g37160

Limit To All Plant Sequences

>Glyma04g37160.2   sequence type=predicted peptide   gene model=Glyma04g37160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPHDLHRPFKRPAISDQERRREQSLLRQAQNRQDAQRHARFLASAALSLPPQSSEPESEPKPEPEFELAEFEAASKLKAVEARKWFAKQLMLPEWMIDIPNNLAQDWFVFARPSGKRCFVVSCNGATISRLRNGAVLHRFPSGLPSGARKKDPSYSILDCIFHEADQTYYVIDMVCWRGYPLSDCTAEFRFFWLTSKLAETDAFEPPSHYHKYRFSLVPVFNCDSNGLYAAYSAPVPYVKDGLLFYNKHAHYQAGITPLALVWKDENCSQYVLDTDSKGQVPNQQQVVLELQDDGKLTTSDDPPMVFGCLDGSFIQQSGLHSGCLLRFSIGEGGLVLMDGKLDKADLHYLGKANRARASADSFSKVMFQHSVRHSPLRIDGLLESVSLPVDQESKACDIEMDG*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain