Report for Sequence Feature Glyma04g36920
Feature Type: gene_model
Chromosome: Gm04
Start: 43414127
stop: 43415390
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g36920
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G48510 AT
Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G63350.1); Has 98 Blast hits to 98 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:17967568-17968452 REVERSE LENGTH=294
SoyBase E_val: 1.00E-48 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005575 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cellular component
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_I1JXH6 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JXH6_SOYBN
SoyBase E_val: 2.00E-180 ISS
UniRef100_Q9FK36 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Emb|CAB62340.1 n=1 Tax=Arabidopsis thaliana RepID=Q9FK36_ARATH
SoyBase E_val: 1.00E-45 ISS
Expression Patterns of Glyma04g36920
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma04g36920
Paralog Evidence Comments
Glyma06g18060 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g36920 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g193900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g36920
Coding sequences of Glyma04g36920
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g36920.1 sequence type=CDS gene model=Glyma04g36920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCCAAGATGGACAAAATAATGTTACGCTTTCGCCCTATCGCCCCCAAACCCCTCCCCGCCGCCGCCGCCGCTCTTTCCGACGCTTCCTCGTCGGAAAGCACCGGCTCCGCCAAGCGGAAGGATAACACCGCCAGCAAGCGGTGCAGTCGAGGGATCCGCCGGAGGAGAAACGCGCCTCCTCCTCCTCCTTCTCCGGCGGTGACTCTCCCGCTGCTGCCGGGATCTCCAGGTCCGAAGAAAATCACCTCAGAACTAAAGAACAAGAATGTACCTGTGTGGCTGAGCTTCGAGAACAACTTCGAGAACCGCGGCGGTGCTGCTTCGGAGAAGCTGGATCCTTGCTGGTACTCGCAGGCGACGGCGGCAGCGGGATCGGTGGTGACGGTGGAGTGCGTGATGGACACGTGGCAGCAGCAGGATGAGGGGTTAGGGTTGGGGAGTGGAGACGAGGAACGGAAGGTGAAGCTGAAAGAGGACACGTGTCCGGGGTTTATATCGGATGGTTACGGGAGGGTGACGTGGACAAATGAGGCGTACAGGGAAACAGTAGGTGCTGGAGGAGTATGGTTGGCAATGAAAGTGGCCGTACCGTATCCGTACAGAGGTTTCACGTGCAGGGTGAGGGTGCGGTACGCGTGCGGGATAGAAAGAACGGTGCCATGTGATGTGTGGAGAATGGACAGTGGTGGCTTTGCCTGGAGATTAGACGTTAAAGCTGCTCTTAGCTTAAGCTTAGCTTTCTAA
Predicted protein sequences of Glyma04g36920
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g36920.1 sequence type=predicted peptide gene model=Glyma04g36920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSKMDKIMLRFRPIAPKPLPAAAAALSDASSSESTGSAKRKDNTASKRCSRGIRRRRNAPPPPPSPAVTLPLLPGSPGPKKITSELKNKNVPVWLSFENNFENRGGAASEKLDPCWYSQATAAAGSVVTVECVMDTWQQQDEGLGLGSGDEERKVKLKEDTCPGFISDGYGRVTWTNEAYRETVGAGGVWLAMKVAVPYPYRGFTCRVRVRYACGIERTVPCDVWRMDSGGFAWRLDVKAALSLSLAF*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
