Glyma04g36880 - SoyBase

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Report for Sequence Feature Glyma04g36880

Feature Type:	gene_model
Chromosome:	Gm04
Start:	43375512
stop:	43380693
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g36880

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G50350	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). \| chr5:20498697-20501611 REVERSE LENGTH=584	SoyBase	E_val: 3.00E-13	ISS
GO:0006979	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to oxidative stress	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1JXH3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JXH3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g36880

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g36880

Paralog	Evidence	Comments
Glyma06g18090	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g36880 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g193600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g36880

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g36880

Limit To All Plant Sequences

>Glyma04g36880.2   sequence type=transcript   gene model=Glyma04g36880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAATATAAATTCATTAACATTTATTCTTAGTTCTCACATAGTATAGTAGGATGTGAATACCAATAATGCGCCAATACCAAATATAACTGAGCAGTTACGATATTCAAATTTCTCATGCTTTTCTGGACTTCTCCGCCAATCTTTTCTTCACGAGCAATGAATGAATGGCATTTGATTTTTGAATGCAACTCCGAACCCTAGAATTCGGCATTTCTATTTCCCCCTTTCTCCTATGGCCACCGCGGCATTCAAATCCACCACCAAGAGAACCCTCGTCGGAGCTTCCTCCGCCGACGACTCCGCCTACTCCTCCTCCCTCCACCACCGCCGCTCCCGGAGCCTCAGCCGTCCCGCCCGCCCTTCCTTCCCCTCCCGCAACGACGAAGACGGCGGCGATCGCCGCACTCCGAGAGGCCGGTTCGTCAACACCGTCCGCGGCTCCGGCTTCCCGGAGATCAGCCTCGACGATCTCGCCATCGAGTTCTTCGAGTCCGCGAAGCGCGACCGCTTCAGCTCCAGAACCTCCAAGTCAGAGGCCAGTCCTGCCGGCGCCGGCTCCGCCGCGTCGCAGCGGCGAGGGAGGTCCGTATCGAGGAAGAGCTCCGGTGTCGGCGACGATAGAAGAAGCAGTGTTGGCGGGGGAAGGCCGTTCTCTGATGCGAATTCGAGAAGGAGGAGATCGGTATCGGTGGTTCGGTACCAAATTAGCGATTCTGAGAGTGACCTGGACCGTTCTCAGAATTCTAGAAGTCGTTCAAATCTGAAAAATACTGATGTTGGGAACAAGTTAATGCACAAACCAGTTGCTTCAGATCAAAGACCAGTGCTAAGAAAGTCCCTAAGCCTGAAGGGTTTGAGGGCATATGATGGCTACTCTAGTCATTCTTCAGTTCTCACTGATGATGAAGGAACAAGTGCTCACTCTAATAAAAATGGAATTGAGAAACTACGATCAGTTTATGCACAAAAAAAGGTGGCACTTACTGACACGGATAAAGGATCCCACAAAGCAAAGCAAAAAGAATTGACGCATATGGAAACTGAGCAGTCAGAGAAGCGGAAACAAGATTTATTAGCTGAAATGGTGTTTGAGGAGCAGCGAGGCAGAGAACTTTCTAAGATTGTTAACGAATTGATTCCTGCTAAGGAGGACAATCTTATACAAAATCCATCAAGAGCCAGGAAGAGAAGTAAAGACAGAAGCCGAATGTCTATGCGCTTGACTGAGGAGGCTGAGAAATATATTGAGGATTTTATTTCAAATGTTGAAGATACAGATATTTCATCACTTGATGGTGAAAGGAGTGATGCAAGCTCATCCATTGGAGGACTAATAAAACCAGAAACATTTAATAGTCTTCCAGTACCTAGATCTCTTCCTGTTTTGACGGATGGGGTTACATTGCCATGGTTGCAATGGGAGACAAATAATGATGCTTCTCCTATGACAAACCTCAATAAGACACATATGACGATCACTCCAAAAACTGAAAACATCAAAGTACAAGATCAAGGTGACAATTCTATCAGCAGTCGTGGAAGTTGGAGCCCTGATTACCTTCAGGAGTATGTTGGAAAGGATGTGTACAGTAAATTAGGAGAAGGTTGTGGTTACCCAGACCATTCATTATCAGCTAAATCCAAAGGATTGAGGTATGATATGGATGATTACCTAAAAGTTAAAAGCAATGAAAATTTGTTGATTGAGAGTTGGAAGCAACGGCAGAGAATTAAATCAGGCACTCTCTTATTTTGTAGCCTAAGATTATTTTAGAAATTCTGGTTTTGAAGAATGGTCATTCCTTCTTCTCGCCTGGTATGAATTCTATGTACAGATAATTGCAATTCATCTATTTATGTTTCCATATATAAGTTGATAAACGATATGCTTAATGTGCGGAAGCCTTCTTTTTTGGGATTAAAATGTGTTGCATAATTTATTTTTATTGCCT

Coding sequences of Glyma04g36880

Limit To All Plant Sequences

>Glyma04g36880.1   sequence type=CDS   gene model=Glyma04g36880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACCGCGGCATTCAAATCCACCACCAAGAGAACCCTCGTCGGAGCTTCCTCCGCCGACGACTCCGCCTACTCCTCCTCCCTCCACCACCGCCGCTCCCGGAGCCTCAGCCGTCCCGCCCGCCCTTCCTTCCCCTCCCGCAACGACGAAGACGGCGGCGATCGCCGCACTCCGAGAGGCCGGTTCGTCAACACCGTCCGCGGCTCCGGCTTCCCGGAGATCAGCCTCGACGATCTCGCCATCGAGTTCTTCGAGTCCGCGAAGCGCGACCGCTTCAGCTCCAGAACCTCCAAGTCAGAGGCCAGTCCTGCCGGCGCCGGCTCCGCCGCGTCGCAGCGGCGAGGGAGGTCCGTATCGAGGAAGAGCTCCGGTGTCGGCGACGATAGAAGAAGCAGTGTTGGCGGGGGAAGGCCGTTCTCTGATGCGAATTCGAGAAGGAGGAGATCGGTATCGGTGGTTCGGTACCAAATTAGCGATTCTGAGAGTGACCTGGACCGTTCTCAGAATTCTAGAAGTCGTTCAAATCTGAAAAATACTGATGTTGGGAACAAGTTAATGCACAAACCAGTTGCTTCAGATCAAAGACCAGTGCTAAGAAAGTCCCTAAGCCTGAAGGGTTTGAGGGCATATGATGGCTACTCTAGTCATTCTTCAGTTCTCACTGATGATGAAGGAACAAGTGCTCACTCTAATAAAAATGGAATTGAGAAACTACGATCAGTTTATGCACAAAAAAAGGTGGCACTTACTGACACGGATAAAGGATCCCACAAAGCAAAGCAAAAAGAATTGACGCATATGGAAACTGAGCAGGCTGTGGTGAAACCAAGAACCTCCACTTTATCCACAGTTGATTGCTTGTTATTAAACAACTCTGATGTTATTCAGACAGTTTCTTCAATCAGAAGGAGCTATGAAACTGAACTGGAAAAGTCAGAGAAGCGGAAACAAGATTTATTAGCTGAAATGGTGTTTGAGGAGCAGCGAGGCAGAGAACTTTCTAAGATTGTTAACGAATTGATTCCTGCTAAGGAGGACAATCTTATACAAAATCCATCAAGAGCCAGGAAGAGAAGTAAAGACAGAAGCCGAATGTCTATGCGCTTGACTGAGGAGGCTGAGAAATATATTGAGGATTTTATTTCAAATGTTGAAGATACAGATATTTCATCACTTGATGGTGAAAGGAGTGATGCAAGCTCATCCATTGGAGGACTAATAAAACCAGAAACATTTAATAGTCTTCCAGTACCTAGATCTCTTCCTGTTTTGACGGATGGGGTTACATTGCCATGGTTGCAATGGGAGACAAATAATGATGCTTCTCCTATGACAAACCTCAATAAGACACATATGACGATCACTCCAAAAACTGAAAACATCAAAGTACAAGATCAAGGTGACAATTCTATCAGCAGTCGTGGAAGTTGGAGCCCTGATTACCTTCAGGAGTATGTTGGAAAGGATGTGTACAGTAAATTAGGAGAAGGTTGTGGTTACCCAGACCATTCATTATCAGCTAAATCCAAAGGATTGAGGTATGATATGGATGATTACCTAAAAGTTAAAAGCAATGAAAATTTGTTGATTGAGAGTTGGAAGCAACGGCAGAGAATTAAATCAGGCACTCTCTTATTTTGTAGCCTAAGATTATTTTAG

>Glyma04g36880.2   sequence type=CDS   gene model=Glyma04g36880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACCGCGGCATTCAAATCCACCACCAAGAGAACCCTCGTCGGAGCTTCCTCCGCCGACGACTCCGCCTACTCCTCCTCCCTCCACCACCGCCGCTCCCGGAGCCTCAGCCGTCCCGCCCGCCCTTCCTTCCCCTCCCGCAACGACGAAGACGGCGGCGATCGCCGCACTCCGAGAGGCCGGTTCGTCAACACCGTCCGCGGCTCCGGCTTCCCGGAGATCAGCCTCGACGATCTCGCCATCGAGTTCTTCGAGTCCGCGAAGCGCGACCGCTTCAGCTCCAGAACCTCCAAGTCAGAGGCCAGTCCTGCCGGCGCCGGCTCCGCCGCGTCGCAGCGGCGAGGGAGGTCCGTATCGAGGAAGAGCTCCGGTGTCGGCGACGATAGAAGAAGCAGTGTTGGCGGGGGAAGGCCGTTCTCTGATGCGAATTCGAGAAGGAGGAGATCGGTATCGGTGGTTCGGTACCAAATTAGCGATTCTGAGAGTGACCTGGACCGTTCTCAGAATTCTAGAAGTCGTTCAAATCTGAAAAATACTGATGTTGGGAACAAGTTAATGCACAAACCAGTTGCTTCAGATCAAAGACCAGTGCTAAGAAAGTCCCTAAGCCTGAAGGGTTTGAGGGCATATGATGGCTACTCTAGTCATTCTTCAGTTCTCACTGATGATGAAGGAACAAGTGCTCACTCTAATAAAAATGGAATTGAGAAACTACGATCAGTTTATGCACAAAAAAAGGTGGCACTTACTGACACGGATAAAGGATCCCACAAAGCAAAGCAAAAAGAATTGACGCATATGGAAACTGAGCAGTCAGAGAAGCGGAAACAAGATTTATTAGCTGAAATGGTGTTTGAGGAGCAGCGAGGCAGAGAACTTTCTAAGATTGTTAACGAATTGATTCCTGCTAAGGAGGACAATCTTATACAAAATCCATCAAGAGCCAGGAAGAGAAGTAAAGACAGAAGCCGAATGTCTATGCGCTTGACTGAGGAGGCTGAGAAATATATTGAGGATTTTATTTCAAATGTTGAAGATACAGATATTTCATCACTTGATGGTGAAAGGAGTGATGCAAGCTCATCCATTGGAGGACTAATAAAACCAGAAACATTTAATAGTCTTCCAGTACCTAGATCTCTTCCTGTTTTGACGGATGGGGTTACATTGCCATGGTTGCAATGGGAGACAAATAATGATGCTTCTCCTATGACAAACCTCAATAAGACACATATGACGATCACTCCAAAAACTGAAAACATCAAAGTACAAGATCAAGGTGACAATTCTATCAGCAGTCGTGGAAGTTGGAGCCCTGATTACCTTCAGGAGTATGTTGGAAAGGATGTGTACAGTAAATTAGGAGAAGGTTGTGGTTACCCAGACCATTCATTATCAGCTAAATCCAAAGGATTGAGGTATGATATGGATGATTACCTAAAAGTTAAAAGCAATGAAAATTTGTTGATTGAGAGTTGGAAGCAACGGCAGAGAATTAAATCAGGCACTCTCTTATTTTGTAGCCTAAGATTATTTTAG

Predicted protein sequences of Glyma04g36880

Limit To All Plant Sequences

>Glyma04g36880.1   sequence type=predicted peptide   gene model=Glyma04g36880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATAAFKSTTKRTLVGASSADDSAYSSSLHHRRSRSLSRPARPSFPSRNDEDGGDRRTPRGRFVNTVRGSGFPEISLDDLAIEFFESAKRDRFSSRTSKSEASPAGAGSAASQRRGRSVSRKSSGVGDDRRSSVGGGRPFSDANSRRRRSVSVVRYQISDSESDLDRSQNSRSRSNLKNTDVGNKLMHKPVASDQRPVLRKSLSLKGLRAYDGYSSHSSVLTDDEGTSAHSNKNGIEKLRSVYAQKKVALTDTDKGSHKAKQKELTHMETEQAVVKPRTSTLSTVDCLLLNNSDVIQTVSSIRRSYETELEKSEKRKQDLLAEMVFEEQRGRELSKIVNELIPAKEDNLIQNPSRARKRSKDRSRMSMRLTEEAEKYIEDFISNVEDTDISSLDGERSDASSSIGGLIKPETFNSLPVPRSLPVLTDGVTLPWLQWETNNDASPMTNLNKTHMTITPKTENIKVQDQGDNSISSRGSWSPDYLQEYVGKDVYSKLGEGCGYPDHSLSAKSKGLRYDMDDYLKVKSNENLLIESWKQRQRIKSGTLLFCSLRLF*

>Glyma04g36880.2   sequence type=predicted peptide   gene model=Glyma04g36880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATAAFKSTTKRTLVGASSADDSAYSSSLHHRRSRSLSRPARPSFPSRNDEDGGDRRTPRGRFVNTVRGSGFPEISLDDLAIEFFESAKRDRFSSRTSKSEASPAGAGSAASQRRGRSVSRKSSGVGDDRRSSVGGGRPFSDANSRRRRSVSVVRYQISDSESDLDRSQNSRSRSNLKNTDVGNKLMHKPVASDQRPVLRKSLSLKGLRAYDGYSSHSSVLTDDEGTSAHSNKNGIEKLRSVYAQKKVALTDTDKGSHKAKQKELTHMETEQSEKRKQDLLAEMVFEEQRGRELSKIVNELIPAKEDNLIQNPSRARKRSKDRSRMSMRLTEEAEKYIEDFISNVEDTDISSLDGERSDASSSIGGLIKPETFNSLPVPRSLPVLTDGVTLPWLQWETNNDASPMTNLNKTHMTITPKTENIKVQDQGDNSISSRGSWSPDYLQEYVGKDVYSKLGEGCGYPDHSLSAKSKGLRYDMDDYLKVKSNENLLIESWKQRQRIKSGTLLFCSLRLF*

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