Glyma04g36800 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g36800

Feature Type:	gene_model
Chromosome:	Gm04
Start:	43309996
stop:	43320641
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g36800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G48470	AT	Annotation by Michelle Graham. TAIR10: embryo defective 2423 \| chr3:17951689-17956754 FORWARD LENGTH=1027	SoyBase	E_val: 0	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR15830	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR15830:SF5	Panther	gb def: Hypothetical protein T29H11 10	JGI		ISS
PF10193	PFAM	Telomere length regulation protein	JGI		ISS
UniRef100_F4JF17	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein embryo defective 2423 n=1 Tax=Arabidopsis thaliana RepID=F4JF17_ARATH	SoyBase	E_val: 0	ISS
UniRef100_I1JXG6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JXG6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g36800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g36800

Paralog	Evidence	Comments
Glyma06g18145	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g36800 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g193000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g36800

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g36800

Limit To All Plant Sequences

>Glyma04g36800.2   sequence type=CDS   gene model=Glyma04g36800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAGGGTTTAGGGAAGAGAGAATTGGAAGGTGAGGTAGTTAGCAGGGTTGCCGAAGTGATTTCGGCTATAAAGAATGCGAAGCACGTCGATCAAGTCATTTGCGCGCTTCATTCCTTAGCCACTATTCTTTTCCCCTTTGACCCTTCTCTCCTCTCAGATAGCATTGATCAGAGTTACGGAGACAAGGTCCAAGTTCCTTCTGCGGAAAAACGACATGCTTGGTGGCGTGTGTTTTATCGAGGAGCTGCTTTTCCTACATTGGCTAGGTTTCTATTACTTGATGTTGCCTCGAACTGGTTGGGTTGTTTTCCCTTCTCGGCACAGAAGTACGTTTATGATGTTTTCTTTGTTCGTGGATTGGTCACTGAGGTGCTGCAGATTTTGGTTCCTTTTCTCCAGCTGAGTTCGAGTGATGGTCTTGATGTTAATGCTGTCCTCTCTAATTCTGAAAGATTGCTTGTACTGTGCTTGCTTGAAAATAATGGGGCGCTCCAGTTGGCGAGAGAGTTTGGTGGTTCTTCTAAATTGAAAAGCGTTACAGATGTACAGATCAAGATGGATGTATCTATGGTGGCACAGATTGTTGCATCTATTCCTGATAAAGCAAGGATGAACTCCATGGCTTCATTGTCATCACATGTGTTCTTCAAGCAGATTGTTGTCCAACTACTCTCCCTGGCAGAAGAAAGAGAGACAATTTTGCTAGACAATGTAGACATGGATGAAATGGACAAAAATGGTGCACTGTTATTTGTAGGGGAAATGTTTTCTCGCATTTGTCGCCGTGGCTCTGCTGATCTCCTAACTAGTGAATTAATTCCAGAAGTTTTTAGGCTTGTCAACAGCCTCTTATCATCACATAATGATTCAGTTACTAATGAATTGTTTGAGTCAAAACCAGACACGGTATTTTGGTCGAGAATAATGGAAACCATCAGTGATCCTTATACCGTGGAAAGAATCTCTGAGCTGATTTTGCATAAGTTAGCTACTCAAGATGCTGATGATGTTCAAGCGTATTGGGTGTTGTGGTTGTTATTCCATCGAATTTTTAAGCTTCAGCCTTCTGTCAGGTCTATGTTTGTTGACAAATTCCTGCTATGGAAAGTATTCCCTATTAGCTGCCTGAAATGGATCCTTCAATTTGCTGTTCATGAATGCCCACCTGATACCTCATTATCAGGACATAATCACCCTGGGATTTTGAATACTGTCCAACGCCTGCTCTCAGTATGGTCTAAGAAAGAATTTGTGCAAACAGCACCTATTGAGCAACAAGTTTACATATCTGCTGCCCTAGGCCTTTCTCTGGAGACAATGTCGAAGGAGGAATTGGATGGGATGAAGAATGCCATGCACTTTATCCTTCAAGGAGTTAGCTGTAGGCTGGAGAGTCCTAATTATTTAGTTAGAAAAATGGCTAGCAGTGTTGCTTTGGCATTGTCTAAAACTATTGATCCAAAGAATCCTCTGTACCTTGAGGATAGCTGCAGCGGGGAGACAATTGATTGGGAATTTGGATTCACTATCCCCAAGAAAGGGAATCTGGCTGCCTCAAATTGTGGAGGAAAAAGTGTTGAGGGGACAAAAATATCTACTGTGTCAGGTCCAGAGAGGGACTTTGATTCCCCTTCCAATAAAGAGAAAAGTATTAATGTAAAGGGCAGAAAGAAGTTATTGGACTTTAATGGGCTTGATCCAGATGAGATTATTGATCTAGCATCACTGAATCTTGAATCAGACGATAATCATGAGGATGTTGATGACAGTGCAAGTGAGAATTCATATTCTTCAAATGATTCATCTTTACAGCCGTATGATTTGTCAGATGATGACTCAGATTTGAAAAGAAAAATTTCACAGTTGGCTGATGTAGTTGCAGCTCTTAGAAAATCCGATGATGCCGATGGGGTGGAAAGGGCTATTGATGTAGCTGAAAAGCTCATAAGAGCATCCCCAGACGAACTAAAACATGCAGCAAGGGATCTGACCAGAACTCTTGTTCAGGTTCGTTGCTCTGATATAGCTTTAGAAGGTGCAGAAGAATCAACTGAAGACAAAAGACAAAGATCATTAGTTGCCTTAGCAGTCACCTGCCCATTTGAATCACTTGAGACACTAAACAAGCTTCTGTATTCACCTAATGTAGATATCAGTCAGCGCATTATGATACTAGATGTCATGACTGAAGCAGCTCAGGAGCTTGCTGAATCAAAAATTATGAAACCCAAACATCAGATTAGTTCCCTTATTTCAGTTGTTTCAGATACCCGACCTTGGTTCCTACCTAGCAGCACAGGGACTCCTGGAGCTGGTTCCTGGAAAGAGATCTCAGGTACTGGCTCTTTTTTGAATTGGTCAAATAGCTATGAGAGGGAACTTCCCACAAAACCCAATCAGATCAAGAAAGGGAAAACACGCCAGTGGAGCCTACAATCTCCCGCACAACAAAACCAGATGGAGTATTCTCATAATAAGTTTCCCATGTATGCTGCTGCATTCATGCTTCCTGCCATGGAGGGATATGATAAAAAAAGGCATGGTGTGGACTTGCTTGGCAGGGATTTTATTGTCTTGGGGAAACTCATTTATATGCTTGGGGTCTGTATGAAATCTGTAGCCATGCATCCAGAAGCTTCTGTACTGGCTCCTTCCCTCCTGAATATGTTAAGATCCAGAGAGGTATGCCATCACCGGGAAGCATATGTGAGAAGAGCCGTCCTTTTTGCAGCTGCATGTGTATTGGTTGCCCTTCATCCTACTTACATTTCATCTGCCTTACTCGAAGGAAATGTTGAAATTTCAACTGGCCTTGAATGGATTCGCACATGGGCACTTGATGTAGCCGAGTCGGACACAGATAAAGAATGCTATACGATGGCTATGACATGTATACAGCTCCATGTTGAGATGGCTCTTCAAACTTCCCGAGCATTGGAGTCAGTAAGAAATTCACTCAAGGCAGGTCCTGTTCTTCCTTCTGATGCATCCAAAGTGACCATTAAAATTCCCCACTTAAATGGGGATTAG

Predicted protein sequences of Glyma04g36800

Limit To All Plant Sequences

>Glyma04g36800.2   sequence type=predicted peptide   gene model=Glyma04g36800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEGLGKRELEGEVVSRVAEVISAIKNAKHVDQVICALHSLATILFPFDPSLLSDSIDQSYGDKVQVPSAEKRHAWWRVFYRGAAFPTLARFLLLDVASNWLGCFPFSAQKYVYDVFFVRGLVTEVLQILVPFLQLSSSDGLDVNAVLSNSERLLVLCLLENNGALQLAREFGGSSKLKSVTDVQIKMDVSMVAQIVASIPDKARMNSMASLSSHVFFKQIVVQLLSLAEERETILLDNVDMDEMDKNGALLFVGEMFSRICRRGSADLLTSELIPEVFRLVNSLLSSHNDSVTNELFESKPDTVFWSRIMETISDPYTVERISELILHKLATQDADDVQAYWVLWLLFHRIFKLQPSVRSMFVDKFLLWKVFPISCLKWILQFAVHECPPDTSLSGHNHPGILNTVQRLLSVWSKKEFVQTAPIEQQVYISAALGLSLETMSKEELDGMKNAMHFILQGVSCRLESPNYLVRKMASSVALALSKTIDPKNPLYLEDSCSGETIDWEFGFTIPKKGNLAASNCGGKSVEGTKISTVSGPERDFDSPSNKEKSINVKGRKKLLDFNGLDPDEIIDLASLNLESDDNHEDVDDSASENSYSSNDSSLQPYDLSDDDSDLKRKISQLADVVAALRKSDDADGVERAIDVAEKLIRASPDELKHAARDLTRTLVQVRCSDIALEGAEESTEDKRQRSLVALAVTCPFESLETLNKLLYSPNVDISQRIMILDVMTEAAQELAESKIMKPKHQISSLISVVSDTRPWFLPSSTGTPGAGSWKEISGTGSFLNWSNSYERELPTKPNQIKKGKTRQWSLQSPAQQNQMEYSHNKFPMYAAAFMLPAMEGYDKKRHGVDLLGRDFIVLGKLIYMLGVCMKSVAMHPEASVLAPSLLNMLRSREVCHHREAYVRRAVLFAAACVLVALHPTYISSALLEGNVEISTGLEWIRTWALDVAESDTDKECYTMAMTCIQLHVEMALQTSRALESVRNSLKAGPVLPSDASKVTIKIPHLNGD*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain