Report for Sequence Feature Glyma04g36600
Feature Type: gene_model
Chromosome: Gm04
Start: 43109794
stop: 43114977
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g36600
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G48420 AT
Annotation by Michelle Graham. TAIR10: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr3:17929743-17931551 FORWARD LENGTH=319
SoyBase E_val: 3.00E-159 ISS
GO:0006098 GO-bp
Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt
SoyBase N/A ISS
GO:0008152 GO-bp
Annotation by Michelle Graham. GO Biological Process: metabolic process
SoyBase N/A ISS
GO:0010027 GO-bp
Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization
SoyBase N/A ISS
GO:0010103 GO-bp
Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis
SoyBase N/A ISS
GO:0016117 GO-bp
Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process
SoyBase N/A ISS
GO:0019252 GO-bp
Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process
SoyBase N/A ISS
GO:0019684 GO-bp
Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0009570 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma
SoyBase N/A ISS
GO:0009941 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope
SoyBase N/A ISS
GO:0003824 GO-mf
Annotation by Michelle Graham. GO Molecular Function: catalytic activity
SoyBase N/A ISS
GO:0016787 GO-mf
Annotation by Michelle Graham. GO Molecular Function: hydrolase activity
SoyBase N/A ISS
KOG2914
KOG
Predicted haloacid-halidohydrolase and related hydrolases
JGI ISS
PTHR18901 Panther
2-DEOXYGLUCOSE-6-PHOSPHATE PHOSPHATASE 2
JGI ISS
PF00702 PFAM
haloacid dehalogenase-like hydrolase
JGI ISS
UniRef100_G8A2H2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Protein cbbY n=1 Tax=Medicago truncatula RepID=G8A2H2_MEDTR
SoyBase E_val: 8.00E-163 ISS
UniRef100_I1JXF1 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JXF1_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma04g36600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma04g36600
Paralog Evidence Comments
Glyma06g18320 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g36600 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g191700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g36600
Coding sequences of Glyma04g36600
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g36600.1 sequence type=CDS gene model=Glyma04g36600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCAGCTTCAAGTAGCATCATCTCCATCTCCTCTGCTTCACTCTTCACTCCAAAAATCCAATGCCTCCCCAAACACAACAAGGACCATGATCATGTTCCAATTCCATCATCATCATCCTTCACAACACATGCTTCTCTCAAGATATCAAGACCAACAACAACGTTTGGAATCACCACAACAACCACAAGGCTTAATTTTCCTCCTCGTAGGTTGAGTTGTTCAGCATCAGCTTCTTCCTCTTCCACTCTTCCCTCGGCTCTTCTATTTGACTGTGATGGAGTCCTTGTGGATACTGAGAAAGATGGCCATCGCATATCTTTCAACCAAACCTTCCAAGAGAGAGAACTAGGTGTTACCTGGGATGTGGACTTGTACGGGGAATTGCTGAAAATTGGAGGCGGAAAAGAAAGGATGACAGCATACTTTAACAAGGTGGGTTGGCCTGCGAATGCCCCAACAGGTGAACAAGAAAGAAAAGAATTCATAGCTTCACTCCACAAACAAAAGACAGAACTATTTATGGCCCTTATAGAGAAAAAACTGTTGCCTCTTCGTCCAGGTGTTGCAAAGATTATCGATCAGGCTTTTGCTCAAGGAGTCCAAGTTGCAGTTTGCAGCACTTCCAACGAGAAGGCGGTCTCTGCAATAGTATCATTCTTGCTGGGACCTGAGAGAGCAGAAAAAATCAAGATATTTGCAGGAGACGTGGTTCCCCGTAAAAAGCCTGATCCTGCCATCTACCTATTAGCAGCCAGCACTCTGAATGTTGAACCTTCAAGATGTGTTGTGGTGGAGGACAGTGCCATAGGCTTAGCAGCTGCTAAAGCAGCTGGAATGACGTGTATAGTAACAAAGAGCGGCTATACAGCAGATGAAGATTTCTTAAATGCAGATGCAGTCTTTGACTGCATTGGTGATCCTCCTGAGGAGAGATTTGACTTGGCATTCTGTGGAAGCCTTCTTGAGAAGCAATACGTGAGCTAG
Predicted protein sequences of Glyma04g36600
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g36600.1 sequence type=predicted peptide gene model=Glyma04g36600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAASSSIISISSASLFTPKIQCLPKHNKDHDHVPIPSSSSFTTHASLKISRPTTTFGITTTTTRLNFPPRRLSCSASASSSSTLPSALLFDCDGVLVDTEKDGHRISFNQTFQERELGVTWDVDLYGELLKIGGGKERMTAYFNKVGWPANAPTGEQERKEFIASLHKQKTELFMALIEKKLLPLRPGVAKIIDQAFAQGVQVAVCSTSNEKAVSAIVSFLLGPERAEKIKIFAGDVVPRKKPDPAIYLLAASTLNVEPSRCVVVEDSAIGLAAAKAAGMTCIVTKSGYTADEDFLNADAVFDCIGDPPEERFDLAFCGSLLEKQYVS*