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Report for Sequence Feature Glyma04g36570

Feature Type:gene_model
Chromosome:Gm04
Start:43093760
stop:43098217
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g36570
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G63190AT Annotation by Michelle Graham. TAIR10: MA3 domain-containing protein | chr5:25346145-25348563 FORWARD LENGTH=702 SoyBaseE_val: 0ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009734GO-bp Annotation by Michelle Graham. GO Biological Process: auxin mediated signaling pathway SoyBaseN/AISS
GO:0009744GO-bp Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus SoyBaseN/AISS
GO:0009750GO-bp Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG0403 KOG Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain JGI ISS
PTHR12626Panther PROGRAMMED CELL DEATH 4 JGI ISS
PF02847PFAM MA3 domain JGI ISS
UniRef100_G7JNQ7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Eukaryotic translation initiation factor 4 gamma n=1 Tax=Medicago truncatula RepID=G7JNQ7_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1JXE8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JXE8_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g36570
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g36570 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g191500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g36570
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g36570
>Glyma04g36570.1   sequence type=CDS   gene model=Glyma04g36570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCAAGCGAGGGGTTTCTGACCGATGGACAGAGAGAGATTCTGAAAATAGCGAGTCAGAATGTGGAGAATTTGTCTTCCTCGCCGAAATCTCCATCCTCCTTGCTTGCTGAACATCATCATCACGTGAGGGCTCCTTCAGGGGGTGGTAAGGCACAGACTGCTGGGCATGCTGCCAGGAATGTGCGCCGGTCGCACTCCGGAAAGTATGGGAGGGCGAAGAAGGACGGTGCTGGTGGTAAGGGCACTTGGGGGAAATTGCTTGATACAGATGGTGAATCCCGTATAGACAAGAACGATCCAAACTATGATAGCGGCGAGGAACCTTATCAACTGGTGGGATCTACTGTTACTGATCCTTTAGATGACTTCAAGAAAGCCGTAGTATCCATCATAGAGGAATATTTCAGTAATGGGGATGTCGACTTGGCCGCATCTGATCTCAGAGAACTTGGATCAAATAAATATTATCCATACTTCATTAAGCGTCTTGTATCCATGGCCATGGATAGGCATGATAAAGAGAAAGAGATGGCTTCAGTTCTGCTTTCAGCATTGTATGCTGATGTCATCAGTCCTGCACAGATTAGAGATGGGTTTTTTATGCTTATTGAATCTGCTGATGATCTTGCAGTGGACATACTGGATGCAGTTGACATCCTTGCTTTATTTCTGGCACGTGCTGTTGTGGATGACATCATTCCTCCAGCCTTTCTTGCCAGGGCCAAGAAGGCTCTTCCAGAACCTTCTAAGGGAGTTCAAGTAATCCAGACTGCTGAAAAAAGTTATCTCTCAGCTCCACACCATGCAGAACTTGTGGAGAGGCGATGGGGTGGTAGCACTCACATCACTGTTGAAGATGTGAAGAAGAGGATTGCTGATTTACTAAGAGAATATGTGGATAGTGGTGACACATTAGAAGCCTGTAGGTGCATACGGGAATTGGGGGTTTCATTCTTTCATCATGAGGTCGTGAAGAGGGCCTTGGTACTTGCCATGGAGATCCATTCGGCAGAACCTCAACTGTTGAAGCTATTAAAAGAAGCAGCTGAAGAGGGACTTATTAGTTCCAGCCAAATGGTGAAAGGATTTTCTCGTTTGGAAGAAGTCCTAGATGATCTTGCTCTTGATATTCCATCAGCTAAAACTCAGTTTCAGTCATTGGTGCCTAAGGCAATATCAGAAGGGTGGCTTGATGCCTCATTTTTGAAACCATCTAGTGAAGATGGGGATATAGTAGTTGAAGATGAAAAGGTGAGGAAGTATAAAAAAGAGGTTGTAACTATAATTCATGAATATTTTCTTTCTGATGACATTCCTGAACTCATTCGAAGTCTTGAAGATCTTGGGGCACCTGAGTATAACCCAATATTTTTGAAGAAGCTAATAACTCTTGCCATGGACAGAAAGAACAAGGAAAAGGAAATGGCATCAGTACTGCTATCTGCTCTTCATATAGAGATCTTCTCAACAGAGGATATAGTTAATGGTTTTGTCATGCTTCTGGAAAGTGCAGAAGATACAGCACTAGATATATTGGATGCATCAAATGAGCTTGCTCTTTTCTTAGCACGAGCTGTGATTGATGATGTATTGGCTCCTCTGAATTTAGAGGAAATTAGCAGCAAGTTGCCTCCAAAATGCAGTGGTAGTGAAACTGTACGGATGGCTAGATCACTTGTTGCTGCTCGTCATGCTGGTGAGAGACTATTGAGATGTTGGGGTGGTGGGACTGGATGGGCTGTTGAAGATGCCAAGGACAAAATCATGAAGCTCTTGGAGGAGTACGAGAGTGGAGGTGTTGTGAGTGAAGCATGCCAGTGTATCCGTGACCTGGGAATGCCTTTCTTCAACCACGAGGTTGTCAAGAAAGCTTTGGTTATGGCCATGGAGAAGAAGAATGATAGGATGCTGGATCTGCTGCAGGAATGTTTCAGTGAAGGTCTAATAACCATCAATCAGATGACCAAAGGGTTCACCAGAATCAAGGACGGTCTTGATGATCTCGCTCTGGACATTCCAAACGCTAACGAGAAATTCAGCTTCTATTTGGAGCATGCCCTGAAGAAGGGCTGGCTCCTACCATCATTTGATTCCACTGCCACAGATGTCTAA
Predicted protein sequences of Glyma04g36570
>Glyma04g36570.1   sequence type=predicted peptide   gene model=Glyma04g36570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSEGFLTDGQREILKIASQNVENLSSSPKSPSSLLAEHHHHVRAPSGGGKAQTAGHAARNVRRSHSGKYGRAKKDGAGGKGTWGKLLDTDGESRIDKNDPNYDSGEEPYQLVGSTVTDPLDDFKKAVVSIIEEYFSNGDVDLAASDLRELGSNKYYPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPAQIRDGFFMLIESADDLAVDILDAVDILALFLARAVVDDIIPPAFLARAKKALPEPSKGVQVIQTAEKSYLSAPHHAELVERRWGGSTHITVEDVKKRIADLLREYVDSGDTLEACRCIRELGVSFFHHEVVKRALVLAMEIHSAEPQLLKLLKEAAEEGLISSSQMVKGFSRLEEVLDDLALDIPSAKTQFQSLVPKAISEGWLDASFLKPSSEDGDIVVEDEKVRKYKKEVVTIIHEYFLSDDIPELIRSLEDLGAPEYNPIFLKKLITLAMDRKNKEKEMASVLLSALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEEISSKLPPKCSGSETVRMARSLVAARHAGERLLRCWGGGTGWAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKNDRMLDLLQECFSEGLITINQMTKGFTRIKDGLDDLALDIPNANEKFSFYLEHALKKGWLLPSFDSTATDV*






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