Glyma04g36440 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g36440

Feature Type:	gene_model
Chromosome:	Gm04
Start:	42955296
stop:	42960748
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g36440

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G01680	AT	Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr3:252033-255246 FORWARD LENGTH=740	SoyBase	E_val: 0	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0043621	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein self-association	SoyBase	N/A	ISS
PF11594	PFAM	Mediator complex subunit 28	JGI		ISS
UniRef100_E2FKH3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Sieve element occlusion c n=1 Tax=Glycine max RepID=E2FKH3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_E2FKH3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Sieve element occlusion c n=1 Tax=Glycine max RepID=E2FKH3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g36440

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g36440

Paralog	Evidence	Comments
Glyma06g18430	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g36440 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g190300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g36440

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g36440

Limit To All Plant Sequences

>Glyma04g36440.2   sequence type=CDS   gene model=Glyma04g36440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCAACATGAGCAACCCTAAGATGCAGCAAAGGAGGGAGCGACGCATGTTCTCCACCTCTGATGACAGTGCCATGACCAAGCAAGTTGAGGCCACTCATGCCCCTGATGGTCGTGAAATTGATGTCAAACCCATTCTCCAAATTGTGGATGAAATCTTGGTTCGGTTCATTGCTCGCACCGTTGAGGGTCATGAAGTAAAGCGAGATCAAGATGCATTGGAGATGACTGCTGCTCTGGCTGAATTTGACATGCTTGACTCGCTGGCTTATATCATAAACAAAATTTCCTGCGAGCTATCATGCAAGTGCTCGGGAGGGGGAGATGCACATTCATCAACTATGGTGCTACTGAATTACATGTCTAGCTATGCATGGCATGCGAAAGTTGTGTTAACCTTAGCTGCCTTTGCTGTTATTTTTGGAGAGTTTTGGCTTGTTGCTCAGTTGAGTGCTGAAAACACACTTGCCAAGTCTGTGGCCCTACTTAAGCAACTACCTGACATTGCTGAGAATTTCATGTCCCTGAAGCCCCATTTTGAGGCACTCATTAGGCTCGTGAAGGCGGCAATGGATGTAACCATGTGCATTGTTGAATTCAAGGAGCTACCATCTGAATACATTTCAGAGGATACTCCTCCCATGTCTGTTGCAAGTACTCACATTCCTATTGCTTCCTATTGGGTCATCAGAAGTATTGTGGCTTGTTCCTCACAAATTGCTAGTCTCGTAGGCATGAGAAATGAATCCATTTCATCAACCACAGAGGCATGGGAATTATCTAGTCTGGCTCACAAAGTTAGCAGTATATATGAGCACCTCAAGAACCAACTGGTTCTTTGCTACCAATATATAGATGACAAGAGGCATATAGAGGCCTTCCATAATCTGATACGTCTTTTCGAGACAGTCCATGTAGACAACATGAAAATTCTCAGAGCACTGATATATGCAAAGGATGATGTTCTTCCACTTGTAGATGGAACTACAAAATCAAGGGTTAGTCTCGAGGTACTAAGGAGAAAACATGTGTTGCTGCTCATATCAGATCTTGATCTTTCACAAGAAGAGATCCTGGTACTTGATAATTTGTACAAAGATGCCCGAGCGAGGGGTGATACGCACTATGAGATGGTATGGATCCCAGTTGTGGACAAAGCAACCTGGAATGAGACGAGCAAACAGAAGTTTGAGTATTTGCAATCATTGATGGCATGGTACAGTGTCTATGATCCTTTCATCATTGAACCATCAGCAATTAAGTACATCAAAGAAGTGTGGAATTTCTCAAAGACAGCTATTCTAGTGGCCCTTGATCCACAAGGCAAATTGTCCTCCCCTAATGTTGTCCATATGTTATGGATTTGGGGAAATTTGGCCTTCCCCTTCACAAGTGAGAAAGAAGAATCCTTGTGGAAGCAAGAGATTTGGAGCCTTGAGCTGCTTGTTGATGGCATTGATCCTACAGTTTTAGAATGGATGACAGATGGAAAACTCATATGCCTGTATGGAGGCGAAGACCTGGAGTGGATTGAAAAATTCACAACCACAGCAATAAGTGTTGCAAAAGCTGGCAAGTTCGAGCTAGAGATGGCGTACGTGGGAAAGAGCAACGCGAAGGAGCGTATGCAGAAGATGATCAAGACCTTCACCACAAGAAAGTTCAGTTACTTCTGGCCCAACGTGACATCCATATGGTTCTTCTGGACGAGGCTAGAGAGCATGCTGTACTCCAAGCTGCAGCACGGGAGGACGGTAGAGAACGATGACATCATGAGCCAAGTCATGACCGTGCTCAGCTTCGATGGCAGCGATCGAGGCTGGGCGATCTTCTGCAGAGGCGCCACCGAGATGGCCAGAGCCAAGGGTGACAGTGCTCTGATATGCTTGCAGGACTTTGATAAGTGGAAGGACAGAATTGAGGAAGATGGTGTGGTGCAAGCAATGAATGATTATCTCAACAAAAACAAACCACCACATCACTGCAATCGCTTGATCCTTCCTGGTAGCACTGGTGGCATACCGCAGAAGGTTGTTTGTGCTGAGTGTGGACGCCAAATGGAGAAGTACTTCATGTATCGCTGTTGTGTGGAGTAA

Predicted protein sequences of Glyma04g36440

Limit To All Plant Sequences

>Glyma04g36440.2   sequence type=predicted peptide   gene model=Glyma04g36440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSNMSNPKMQQRRERRMFSTSDDSAMTKQVEATHAPDGREIDVKPILQIVDEILVRFIARTVEGHEVKRDQDALEMTAALAEFDMLDSLAYIINKISCELSCKCSGGGDAHSSTMVLLNYMSSYAWHAKVVLTLAAFAVIFGEFWLVAQLSAENTLAKSVALLKQLPDIAENFMSLKPHFEALIRLVKAAMDVTMCIVEFKELPSEYISEDTPPMSVASTHIPIASYWVIRSIVACSSQIASLVGMRNESISSTTEAWELSSLAHKVSSIYEHLKNQLVLCYQYIDDKRHIEAFHNLIRLFETVHVDNMKILRALIYAKDDVLPLVDGTTKSRVSLEVLRRKHVLLLISDLDLSQEEILVLDNLYKDARARGDTHYEMVWIPVVDKATWNETSKQKFEYLQSLMAWYSVYDPFIIEPSAIKYIKEVWNFSKTAILVALDPQGKLSSPNVVHMLWIWGNLAFPFTSEKEESLWKQEIWSLELLVDGIDPTVLEWMTDGKLICLYGGEDLEWIEKFTTTAISVAKAGKFELEMAYVGKSNAKERMQKMIKTFTTRKFSYFWPNVTSIWFFWTRLESMLYSKLQHGRTVENDDIMSQVMTVLSFDGSDRGWAIFCRGATEMARAKGDSALICLQDFDKWKDRIEEDGVVQAMNDYLNKNKPPHHCNRLILPGSTGGIPQKVVCAECGRQMEKYFMYRCCVE*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain