Glyma04g36420 - SoyBase

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Report for Sequence Feature Glyma04g36420

Feature Type:	gene_model
Chromosome:	Gm04
Start:	42938494
stop:	42941639
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g36420

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G24770	AT	Annotation by Michelle Graham. TAIR10: 31-kDa RNA binding protein \| chr4:12766223-12767952 REVERSE LENGTH=329	SoyBase	E_val: 1.00E-100	ISS
GO:0006396	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA processing	SoyBase	N/A	ISS
GO:0009073	GO-bp	Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family biosynthetic process	SoyBase	N/A	ISS
GO:0009451	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA modification	SoyBase	N/A	ISS
GO:0009631	GO-bp	Annotation by Michelle Graham. GO Biological Process: cold acclimation	SoyBase	N/A	ISS
GO:0009965	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis	SoyBase	N/A	ISS
GO:0016226	GO-bp	Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly	SoyBase	N/A	ISS
GO:0016553	GO-bp	Annotation by Michelle Graham. GO Biological Process: base conversion or substitution editing	SoyBase	N/A	ISS
GO:0030154	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell differentiation	SoyBase	N/A	ISS
GO:0043489	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA stabilization	SoyBase	N/A	ISS
GO:0045036	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to chloroplast	SoyBase	N/A	ISS
GO:0045087	GO-bp	Annotation by Michelle Graham. GO Biological Process: innate immune response	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0009579	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
GO:0008266	GO-mf	Annotation by Michelle Graham. GO Molecular Function: poly(U) RNA binding	SoyBase	N/A	ISS
KOG0131	KOG	Splicing factor 3b, subunit 4	JGI		ISS
PTHR24012	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24012:SF56	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI		ISS
UniRef100_B9RAR1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ribonucleoprotein, chloroplast, putative n=1 Tax=Ricinus communis RepID=B9RAR1_RICCO	SoyBase	E_val: 4.00E-110	ISS
UniRef100_I1JXD6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JXD6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g36420

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g36420 not represented in the dataset	Glyma04g36420 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g36420

Paralog	Evidence	Comments
Glyma06g18470	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g36420 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g190100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g36420

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g36420

Limit To All Plant Sequences

>Glyma04g36420.2   sequence type=transcript   gene model=Glyma04g36420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTTGTTTATGATATTTTTGGCAGCAAAACCCTTCCCCTAGGCTTCCCCCTCGTCTTATCCACACTCTGCATCTTTAACCTTGTTTTAAACCCTTCACTGATCACTCACTTACTCTTCTTCTTCTTCGTACATGTCTATCACTTCTTCCACTTCCTTCAAGTCCCTCACTATGGCCGAGTCCTGCCTCCTCTCTTCTCCCTCCTCACTCTTCAACAACAAAACCAAACCCTCTCTATTCTCACCCCCCTCCAAACCCCTCACACTCCAATTCTCATGCATCAACTCCTCAGTCTCTCTCTCCCTCGCCGCGCGAGCTCACCGCTCTCCCCTCGTCACGCGCGTGGCCCAAACTTCCGATTGGGCCCAACAAGAAGAAGACGACACCGCCACCTTCCAAGACGAAGAACAGGGCCTTAGTGAAACCCAAGCGGGCCTTTCCAGTTGGGAGCCCAACGGCGAAGACGCCGGAGAAGAGAGCTTCGCCGAACCGCCGGAAGAGGCAAAGCTCTTCGTTGGGAACTTGCCTTACGACGTTGATAGCCAGAAATTGGCCATGCTCTTCGAACAAGCCGGAACCGTTGAAATCGCCGAGGTTATTTATAATAGGGAAACTGACCAGAGTCGCGGTTTTGGGTTTGTGACGATGAGTACCGTTGAAGAAGCTGAGAACGCCGTGGAGAAATTCAGTCGTTACGATTTTGATGGAAGATTGTTGACTGTTAATAAGGCTTCTCCAAGAGGAACTCGGCCGGAACGCCCGCCGCCTCGTCACTCCTTTGAGCCTTCCTTATCAATCTATGTTGGTAATTTGCCATGGGATGTTGATAATACCCGGCTGGAGCAAATTTTCAGTGAACATGGTAATGTGGTGAATGCTCGGGTAGTCTATGACAGGGAGACTCGTCGATCACGTGGCTTTGGCTTTGTCACAATGTCTGATGAGACGGAAATGAAAGATGCGGTTGCTGCTCTTGATGGTCAGAGTTTGGACGGAAGGCCAATTAGGGTGAGTGTTGCCGAGGACAGGCCAAGGCGTGGTTCCTTTTGAGCGTTATCTCATGTAGTTCCCCATGTCAGCTGCTGGAGTTATCTTGCATTTTTTTAATAGCTGAGGATATACTATAGTGTCAATTTTTGTTCAAAGGAAAATCCTTTCTTGGGGCACCAATTTCAGATTAGATTTACGTATTTTGTTGTTATTAGTTTAATGCCCTGATGAAAATTAAGTTGTAATTTCGGACTCCTGAGATTGGAGAAAAGTATACTTTGTTGTTGCCTTTTTCTTTGGGCTATTTGTTATTATTTATGAAATGAAAAAGGGGGGAGGGAAGTTCTGTCGCGACTATTGTAGAACTGGTTTTTTTCGATTGTACTTAAAATTCAACTGAATAAATAGCGTGCATATTATTTCTATGGTCACAAGTCATATGATTCAGTTTAGCTAATGATATTTTACTTTTGGGCGTA

Coding sequences of Glyma04g36420

Limit To All Plant Sequences

>Glyma04g36420.1   sequence type=CDS   gene model=Glyma04g36420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTATCACTTCTTCCACTTCCTTCAAGTCCCTCACTATGGCCGAGTCCTGCCTCCTCTCTTCTCCCTCCTCACTCTTCAACAACAAAACCAAACCCTCTCTATTCTCACCCCCCTCCAAACCCCTCACACTCCAATTCTCATGCATCAACTCCTCAGTCTCTCTCTCCCTCGCCGCGCGAGCTCACCGCTCTCCCCTCGTCACGCGCGTGGCCCAAACTTCCGATTGGGCCCAACAAGAAGAAGACGACACCGCCACCTTCCAAGACGAAGAACAGGGCCTTAGTGAAACCCAAGCGGGCCTTTCCAGTTGGGAGCCCAACGGCGAAGACGCCGGAGAAGAGAGCTTCGCCGAACCGCCGGAAGAGGCAAAGCTCTTCGTTGGGAACTTGCCTTACGACGTTGATAGCCAGAAATTGGCCATGCTCTTCGAACAAGCCGGAACCGTTGAAATCGCCGAGGTTATTTATAATAGGGAAACTGACCAGAGTCGCGGTTTTGGGTTTGTGACGATGAGTACCGTTGAAGAAGCTGAGAACGCCGTGGAGAAATTCAGTCGTTACGATTTTGATGGAAGATTGTTGACTGTTAATAAGGCTTCTCCAAGAGGAACTCGGCCGGAACGCCCGCCGCCTCGTCACTCCTTTGAGCCTTCCTTATCAATCTATGTTGGTAATTTGCCATGGGATGTTGATAATACCCGGCTGGAGCAAATTTTCAGTGAACATGGTAATGTGGTGAATGCTCGGGTAGTCTATGACAGGGAGACTCGTCGATCACGTGGCTTTGGCTTTGTCACAATGTCTGATGAGACGGAAATGAAAGATGCGGTTGCTGCTCTTGATGGTCAGGTATTACTAAAGTTTTTTGTGAAATTATCAATGTTACCTGCATTGATAATTAAATATGCTGAAAACTGGAAGGGGACAGGATTATCATGGGCTATGCTCATGAGGAAAGTGGTTTGA

>Glyma04g36420.2   sequence type=CDS   gene model=Glyma04g36420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTATCACTTCTTCCACTTCCTTCAAGTCCCTCACTATGGCCGAGTCCTGCCTCCTCTCTTCTCCCTCCTCACTCTTCAACAACAAAACCAAACCCTCTCTATTCTCACCCCCCTCCAAACCCCTCACACTCCAATTCTCATGCATCAACTCCTCAGTCTCTCTCTCCCTCGCCGCGCGAGCTCACCGCTCTCCCCTCGTCACGCGCGTGGCCCAAACTTCCGATTGGGCCCAACAAGAAGAAGACGACACCGCCACCTTCCAAGACGAAGAACAGGGCCTTAGTGAAACCCAAGCGGGCCTTTCCAGTTGGGAGCCCAACGGCGAAGACGCCGGAGAAGAGAGCTTCGCCGAACCGCCGGAAGAGGCAAAGCTCTTCGTTGGGAACTTGCCTTACGACGTTGATAGCCAGAAATTGGCCATGCTCTTCGAACAAGCCGGAACCGTTGAAATCGCCGAGGTTATTTATAATAGGGAAACTGACCAGAGTCGCGGTTTTGGGTTTGTGACGATGAGTACCGTTGAAGAAGCTGAGAACGCCGTGGAGAAATTCAGTCGTTACGATTTTGATGGAAGATTGTTGACTGTTAATAAGGCTTCTCCAAGAGGAACTCGGCCGGAACGCCCGCCGCCTCGTCACTCCTTTGAGCCTTCCTTATCAATCTATGTTGGTAATTTGCCATGGGATGTTGATAATACCCGGCTGGAGCAAATTTTCAGTGAACATGGTAATGTGGTGAATGCTCGGGTAGTCTATGACAGGGAGACTCGTCGATCACGTGGCTTTGGCTTTGTCACAATGTCTGATGAGACGGAAATGAAAGATGCGGTTGCTGCTCTTGATGGTCAGAGTTTGGACGGAAGGCCAATTAGGGTGAGTGTTGCCGAGGACAGGCCAAGGCGTGGTTCCTTTTGA

Predicted protein sequences of Glyma04g36420

Limit To All Plant Sequences

>Glyma04g36420.1   sequence type=predicted peptide   gene model=Glyma04g36420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSITSSTSFKSLTMAESCLLSSPSSLFNNKTKPSLFSPPSKPLTLQFSCINSSVSLSLAARAHRSPLVTRVAQTSDWAQQEEDDTATFQDEEQGLSETQAGLSSWEPNGEDAGEESFAEPPEEAKLFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAENAVEKFSRYDFDGRLLTVNKASPRGTRPERPPPRHSFEPSLSIYVGNLPWDVDNTRLEQIFSEHGNVVNARVVYDRETRRSRGFGFVTMSDETEMKDAVAALDGQVLLKFFVKLSMLPALIIKYAENWKGTGLSWAMLMRKVV*

>Glyma04g36420.2   sequence type=predicted peptide   gene model=Glyma04g36420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSITSSTSFKSLTMAESCLLSSPSSLFNNKTKPSLFSPPSKPLTLQFSCINSSVSLSLAARAHRSPLVTRVAQTSDWAQQEEDDTATFQDEEQGLSETQAGLSSWEPNGEDAGEESFAEPPEEAKLFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAENAVEKFSRYDFDGRLLTVNKASPRGTRPERPPPRHSFEPSLSIYVGNLPWDVDNTRLEQIFSEHGNVVNARVVYDRETRRSRGFGFVTMSDETEMKDAVAALDGQSLDGRPIRVSVAEDRPRRGSF*

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