Glyma04g36410 - SoyBase

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Report for Sequence Feature Glyma04g36410

Feature Type:	gene_model
Chromosome:	Gm04
Start:	42932034
stop:	42936070
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g36410

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G57520	AT	Annotation by Michelle Graham. TAIR10: seed imbibition 2 \| chr3:21288982-21292694 REVERSE LENGTH=773	SoyBase	E_val: 0	ISS
GO:0006979	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to oxidative stress	SoyBase	N/A	ISS
GO:0034484	GO-bp	Annotation by Michelle Graham. GO Biological Process: raffinose catabolic process	SoyBase	N/A	ISS
GO:0080167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to karrikin	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0004553	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds	SoyBase	N/A	ISS
GO:0052692	GO-mf	Annotation by Michelle Graham. GO Molecular Function: raffinose alpha-galactosidase activity	SoyBase	N/A	ISS
PF05691	PFAM	Raffinose synthase or seed inhibition protein Sip1	JGI		ISS
UniRef100_Q25AK2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: H0510A06.3 protein n=1 Tax=Oryza sativa RepID=Q25AK2_ORYSA	SoyBase	E_val: 0	ISS
UniRef100_UPI0002339AB0	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339AB0 related cluster n=1 Tax=unknown RepID=UPI0002339AB0	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g36410

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g36410

Paralog	Evidence	Comments
Glyma06g18480	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g36410 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g190000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g36410

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g36410

Limit To All Plant Sequences

>Glyma04g36410.2   sequence type=transcript   gene model=Glyma04g36410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTGTGATCAAACCTTGCTACTTGAAATTCCAAGCTGATTCTACCTATCACACACTCTCAAACTTGGCGTAATCACGTTCTGTTACTTCAGCTGTATATCTTTTCTATTCCATCTTCAACTCCACTTTAACCTTCAGCTTCATATACGACGATCGCCGGCTAAAATAATATGATGATCACGGCGGCGCCGACTGTGAATGACGAGTGCCTTACGGTGAGGGGCAGGGCGGTTTTGACCCATGTCCCCGGAAACATTGTTGTTTCTCCGGTTGGAACAGAGTCCGCTTTCTTGGGTGCAACTTCAAGCATTTCAAGTTCACGTCATGTTTTTGTTCTTGGAATTCTTCAGGGATATAAGTTGCTATCTTTGTTCAGAGTTAAAATCTGGTGGATGATACCACGTATAGGGAGATCTGCAAGTGATGTTCCAATGGAAACTCAATTTCTGCTCCTTGAAGCAAGAGAAGAGTCTGCCCTTGAGGATGAGCTTTCTTCTGACTCTGAAGAGCCAACTACAGAGAACAGTTGCTACATTCTCTTCTTGCCTGTTTTGGATGGACAGTTTCGCGCAACTTTGCAGGGAACTCAATCAAATGAGCTCCAGTTCTGCATTGAAAGTGGAGATGCTCATGTTCAAACTTCCCAATCACTAGAAGCAGTATTTGTAAATTCAGGGGACAATCCATTTGAGTTAATCAGGGATTCTATCAAGATGTTGGAGAAACACAAAGGAACTTTCTGTCGTCTTGAAAACAAGAGGATTCCTGCACATCTTGACTGGTTTGGATGGTGCACTTGGGATGCTTTTTACACTGAAGTGAGTCCAAATGGAATAAGAGAGGGCCTTCAGAGTTTCTCAAATGGAGGTTGTTCACCGAAGTTTATCATCATTGATGATGGATGGCAAGAGACCCTGAACACTTTTCACAAAGAAGGTGAACCAGTGATTGAGGGAACCCAGTTTGCAACCAGACTGATAGACATTAAAGAAAACAAAAAGTTCACCGATGCAGGCTCCTACAATTCTTGCGACAATCTCCACAATTTTGTTGATTCCATTAAACAGAATATGAATGTAAAATACGTTTACATGTGGCATGCTTTAGCTGGTTATTGGGGAGGTTTACTTCCATCATCAGATACAATGAAGAAATATAATCCAAAGATTGTATATCCAATTCAGTCACCTGGTACCACAGGGAACCTTAGAGATATAGCCATGGATAGCTTGGAAAAATATGGAGTGGGAGTCATTGACCCAGAAAAACTATATGACTTTTACAATGATTACCACAGTTACCTTGCCAGTTGTGGTGTGGATGGAGTCAAAGTAGATGTCCAAAATTTGATAGAAACGTTGGGTTCTGGGTACGGTGGTCGCGTTTCGTTGAGCAAACGGTATCAAGAAGCACTAGAGCAATCTGTAACAAGGAACTTTAAGGACAACAATCTGATTTGTTGCATGTGTCACAACTCTGATTCAATTTACAGCTCAAAGAATAGTGCAGCAGTAAGAGCATCTGAGGATTTCATGCCAAGAGAACCAACATTGCAGACCTTACACATCGCCTCTGTCGCGTTTAACAGTCTTCTTCTGGGAGAGATATTTGTGCCAGACTGGGACATGTTCCATAGCAAGCACGAGACAGCCGAGTTCCATGCTGCAGCAAGAGCAGTAGGTGGATGTGCAGTATATGTCAGTGACAAGCCTGGAAATCATGATTTTAAAATCCTCGAGAAGCTAGTGCTGGCTGATGGATCAGTCTTGAGAGCAAGATATGCCGGCCGCCCTACTCGAGATTGTTTATTTGAAGACCCTGTAATGGATGGTAAAAGGCGTCTTCAATTGCCAAGGAGCAGGATGCTGGCCACTGAAATCATTGGAAGCCGCACCCTTGCGCATAACCATTTCAGGGAAAGTGAGACCCCTTGATGTTGAATTTCTTGAAGAGGTTGCAGGTGAAAATTGGAATGGAGACTGCATAGTATATGCCTTCAATGCAGGCTTGCTTTCCAAGATATCTTGCAGAGGAAAACTTGAAGTGTCCCTGGAGACTCTCCATTGTGAAATATATACAGTATCTCCAATAAGGGTGTTTGGTCATGATGTGCTATTCGCACCAATAGGATTGCTTGACATGTACAATTCAGGAGGAGCAGTAGAAGCCTTGGACTGCACCATGGATGTTGCACAATGCATAATCAAAATCAAAGGCAGAGGATGTGGTCGTTTTGGAGCCTACTCCAACGTTAGACCGAAACTTTGTGTAGTGGACATGAAGGAGGAAGAGTTCTTCTACAACCGTGAAGATGGATTATTGACTATTACACTTGCTGGTGAAGGCAACTCCAAGGACATAGAATTTGTATACTGAGGTGAAGTCAAAGTGAGTCTATTCCGATTCTTCTTCAGTGTCATTTTTTATTTACCTAACCCCGGATGCAAGCATATATAGAATTTTTGTTGTTGTAAGCAATGGAAAAGAGTTGCTTAATTTTGGTCGTGTTATGGTGCTGTATATATTTCAAGCATCATCTGTAACCAGTGATGTGACACGGTCTTATTCTTTGTGAGAACTAAAAAGAAGTAATGTGTTATCATTGGATCTATATAACAGAGATTTAAGAAATTTTAGTATCA

Coding sequences of Glyma04g36410

Limit To All Plant Sequences

>Glyma04g36410.1   sequence type=CDS   gene model=Glyma04g36410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGATCACGGCGGCGCCGACTGTGAATGACGAGTGCCTTACGGTGAGGGGCAGGGCGGTTTTGACCCATGTCCCCGGAAACATTGTTGTTTCTCCGGTTGGAACAGAGTCCGCTTTCTTGGGTGCAACTTCAAGCATTTCAAGTTCACGTCATGTTTTTGTTCTTGGAATTCTTCAGGGATATAAGTTGCTATCTTTGTTCAGAGTTAAAATCTGGTGGATGATACCACGTATAGGGAGATCTGCAAGTGATGTTCCAATGGAAACTCAATTTCTGCTCCTTGAAGCAAGAGAAGAGTCTGCCCTTGAGGATGAGCTTTCTTCTGACTCTGAAGAGCCAACTACAGAGAACAGTTGCTACATTCTCTTCTTGCCTGTTTTGGATGGACAGTTTCGCGCAACTTTGCAGGGAACTCAATCAAATGAGCTCCAGTTCTGCATTGAAAGTGGAGATGCTCATGTTCAAACTTCCCAATCACTAGAAGCAGTATTTGTAAATTCAGGGGACAATCCATTTGAGTTAATCAGGGATTCTATCAAGATGTTGGAGAAACACAAAGGAACTTTCTGTCGTCTTGAAAACAAGAGGATTCCTGCACATCTTGACTGGTTTGGATGGTGCACTTGGGATGCTTTTTACACTGAAGTGAGTCCAAATGGAATAAGAGAGGGCCTTCAGAGTTTCTCAAATGGAGGTTGTTCACCGAAGTTTATCATCATTGATGATGGATGGCAAGAGACCCTGAACACTTTTCACAAAGAAGGTGAACCAGTGATTGAGGGAACCCAGTTTGCAACCAGACTGATAGACATTAAAGAAAACAAAAAGTTCACCGATGCAGGCTCCTACAATTCTTGCGACAATCTCCACAATTTTGTTGATTCCATTAAACAGAATATGAATGTAAAATACGTTTACATGTGGCATGCTTTAGCTGGTTATTGGGGAGGTTTACTTCCATCATCAGATACAATGAAGAAATATAATCCAAAGATTGTATATCCAATTCAGTCACCTGGTACCACAGGGAACCTTAGAGATATAGCCATGGATAGCTTGGAAAAATATGGAGTGGGAGTCATTGACCCAGAAAAACTATATGACTTTTACAATGATTACCACAGTTACCTTGCCAGTTGTGGTGTGGATGGAGTCAAAGTAGATGTCCAAAATTTGATAGAAACGTTGGGTTCTGGGTACGGTGGTCGCGTTTCGTTGAGCAAACGGTATCAAGAAGCACTAGAGCAATCTGTAACAAGGAACTTTAAGGACAACAATCTGATTTGTTGCATGTGTCACAACTCTGATTCAATTTACAGCTCAAAGAATAGTGCAGCAGTAAGAGCATCTGAGGATTTCATGCCAAGAGAACCAACATTGCAGACCTTACACATCGCCTCTGTCGCGTTTAACAGTCTTCTTCTGGGAGAGATATTTGTGCCAGACTGGGACATGTTCCATAGCAAGCACGAGACAGCCGAGTTCCATGCTGCAGCAAGAGCAGTAGGTGGATGTGCAGTATATGTCAGTGACAAGCCTGGAAATCATGATTTTAAAATCCTCGAGAAGCTAGTGCTGGCTGATGGATCAGTCTTGAGAGCAAGATATGCCGGCCGCCCTACTCGAGATTGTTTATTTGAAGACCCTGTAATGGATGGTAAAAGTCTGCTGAAAATTTGGAATTTGAATGTTCTGACCGGGGTGGTAGGCGTCTTCAATTGCCAAGGAGCAGGATGCTGGCCACTGAAATCATTGGAAGCCGCACCCTTGCGCATAACCATTTCAGGGAAAGTGAGACCCCTTGATGTTGAATTTCTTGAAGAGGTTGCAGGTGAAAATTGGAATGGAGACTGCATAGTATATGCCTTCAATGCAGGCTTGCTTTCCAAGATATCTTGCAGAGGAAAACTTGAAGTGTCCCTGGAGACTCTCCATTGTGAAATATATACAGTATCTCCAATAAGGGTGTTTGGTCATGATGTGCTATTCGCACCAATAGGATTGCTTGACATGTACAATTCAGGAGGAGCAGTAGAAGCCTTGGACTGCACCATGGATGTTGCACAATGCATAATCAAAATCAAAGGCAGAGGATGTGGTCGTTTTGGAGCCTACTCCAACGTTAGACCGAAACTTTGTGTAGTGGACATGAAGGAGGAAGAGTTCTTCTACAACCGTGAAGATGGATTATTGACTATTACACTTGCTGGTGAAGGCAACTCCAAGGACATAGAATTTGTATACTGA

>Glyma04g36410.2   sequence type=CDS   gene model=Glyma04g36410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGATCACGGCGGCGCCGACTGTGAATGACGAGTGCCTTACGGTGAGGGGCAGGGCGGTTTTGACCCATGTCCCCGGAAACATTGTTGTTTCTCCGGTTGGAACAGAGTCCGCTTTCTTGGGTGCAACTTCAAGCATTTCAAGTTCACGTCATGTTTTTGTTCTTGGAATTCTTCAGGGATATAAGTTGCTATCTTTGTTCAGAGTTAAAATCTGGTGGATGATACCACGTATAGGGAGATCTGCAAGTGATGTTCCAATGGAAACTCAATTTCTGCTCCTTGAAGCAAGAGAAGAGTCTGCCCTTGAGGATGAGCTTTCTTCTGACTCTGAAGAGCCAACTACAGAGAACAGTTGCTACATTCTCTTCTTGCCTGTTTTGGATGGACAGTTTCGCGCAACTTTGCAGGGAACTCAATCAAATGAGCTCCAGTTCTGCATTGAAAGTGGAGATGCTCATGTTCAAACTTCCCAATCACTAGAAGCAGTATTTGTAAATTCAGGGGACAATCCATTTGAGTTAATCAGGGATTCTATCAAGATGTTGGAGAAACACAAAGGAACTTTCTGTCGTCTTGAAAACAAGAGGATTCCTGCACATCTTGACTGGTTTGGATGGTGCACTTGGGATGCTTTTTACACTGAAGTGAGTCCAAATGGAATAAGAGAGGGCCTTCAGAGTTTCTCAAATGGAGGTTGTTCACCGAAGTTTATCATCATTGATGATGGATGGCAAGAGACCCTGAACACTTTTCACAAAGAAGGTGAACCAGTGATTGAGGGAACCCAGTTTGCAACCAGACTGATAGACATTAAAGAAAACAAAAAGTTCACCGATGCAGGCTCCTACAATTCTTGCGACAATCTCCACAATTTTGTTGATTCCATTAAACAGAATATGAATGTAAAATACGTTTACATGTGGCATGCTTTAGCTGGTTATTGGGGAGGTTTACTTCCATCATCAGATACAATGAAGAAATATAATCCAAAGATTGTATATCCAATTCAGTCACCTGGTACCACAGGGAACCTTAGAGATATAGCCATGGATAGCTTGGAAAAATATGGAGTGGGAGTCATTGACCCAGAAAAACTATATGACTTTTACAATGATTACCACAGTTACCTTGCCAGTTGTGGTGTGGATGGAGTCAAAGTAGATGTCCAAAATTTGATAGAAACGTTGGGTTCTGGGTACGGTGGTCGCGTTTCGTTGAGCAAACGGTATCAAGAAGCACTAGAGCAATCTGTAACAAGGAACTTTAAGGACAACAATCTGATTTGTTGCATGTGTCACAACTCTGATTCAATTTACAGCTCAAAGAATAGTGCAGCAGTAAGAGCATCTGAGGATTTCATGCCAAGAGAACCAACATTGCAGACCTTACACATCGCCTCTGTCGCGTTTAACAGTCTTCTTCTGGGAGAGATATTTGTGCCAGACTGGGACATGTTCCATAGCAAGCACGAGACAGCCGAGTTCCATGCTGCAGCAAGAGCAGTAGGTGGATGTGCAGTATATGTCAGTGACAAGCCTGGAAATCATGATTTTAAAATCCTCGAGAAGCTAGTGCTGGCTGATGGATCAGTCTTGAGAGCAAGATATGCCGGCCGCCCTACTCGAGATTGTTTATTTGAAGACCCTGTAATGGATGGTAAAAGGCGTCTTCAATTGCCAAGGAGCAGGATGCTGGCCACTGAAATCATTGGAAGCCGCACCCTTGCGCATAACCATTTCAGGGAAAGTGAGACCCCTTGA

Predicted protein sequences of Glyma04g36410

Limit To All Plant Sequences

>Glyma04g36410.1   sequence type=predicted peptide   gene model=Glyma04g36410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMITAAPTVNDECLTVRGRAVLTHVPGNIVVSPVGTESAFLGATSSISSSRHVFVLGILQGYKLLSLFRVKIWWMIPRIGRSASDVPMETQFLLLEAREESALEDELSSDSEEPTTENSCYILFLPVLDGQFRATLQGTQSNELQFCIESGDAHVQTSQSLEAVFVNSGDNPFELIRDSIKMLEKHKGTFCRLENKRIPAHLDWFGWCTWDAFYTEVSPNGIREGLQSFSNGGCSPKFIIIDDGWQETLNTFHKEGEPVIEGTQFATRLIDIKENKKFTDAGSYNSCDNLHNFVDSIKQNMNVKYVYMWHALAGYWGGLLPSSDTMKKYNPKIVYPIQSPGTTGNLRDIAMDSLEKYGVGVIDPEKLYDFYNDYHSYLASCGVDGVKVDVQNLIETLGSGYGGRVSLSKRYQEALEQSVTRNFKDNNLICCMCHNSDSIYSSKNSAAVRASEDFMPREPTLQTLHIASVAFNSLLLGEIFVPDWDMFHSKHETAEFHAAARAVGGCAVYVSDKPGNHDFKILEKLVLADGSVLRARYAGRPTRDCLFEDPVMDGKSLLKIWNLNVLTGVVGVFNCQGAGCWPLKSLEAAPLRITISGKVRPLDVEFLEEVAGENWNGDCIVYAFNAGLLSKISCRGKLEVSLETLHCEIYTVSPIRVFGHDVLFAPIGLLDMYNSGGAVEALDCTMDVAQCIIKIKGRGCGRFGAYSNVRPKLCVVDMKEEEFFYNREDGLLTITLAGEGNSKDIEFVY*

>Glyma04g36410.2   sequence type=predicted peptide   gene model=Glyma04g36410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMITAAPTVNDECLTVRGRAVLTHVPGNIVVSPVGTESAFLGATSSISSSRHVFVLGILQGYKLLSLFRVKIWWMIPRIGRSASDVPMETQFLLLEAREESALEDELSSDSEEPTTENSCYILFLPVLDGQFRATLQGTQSNELQFCIESGDAHVQTSQSLEAVFVNSGDNPFELIRDSIKMLEKHKGTFCRLENKRIPAHLDWFGWCTWDAFYTEVSPNGIREGLQSFSNGGCSPKFIIIDDGWQETLNTFHKEGEPVIEGTQFATRLIDIKENKKFTDAGSYNSCDNLHNFVDSIKQNMNVKYVYMWHALAGYWGGLLPSSDTMKKYNPKIVYPIQSPGTTGNLRDIAMDSLEKYGVGVIDPEKLYDFYNDYHSYLASCGVDGVKVDVQNLIETLGSGYGGRVSLSKRYQEALEQSVTRNFKDNNLICCMCHNSDSIYSSKNSAAVRASEDFMPREPTLQTLHIASVAFNSLLLGEIFVPDWDMFHSKHETAEFHAAARAVGGCAVYVSDKPGNHDFKILEKLVLADGSVLRARYAGRPTRDCLFEDPVMDGKRRLQLPRSRMLATEIIGSRTLAHNHFRESETP*

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