SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G57520 | AT | Annotation by Michelle Graham. TAIR10: seed imbibition 2 | chr3:21288982-21292694 REVERSE LENGTH=773 | SoyBase | E_val: 0 | ISS |
| GO:0006979 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to oxidative stress | SoyBase | N/A | ISS |
| GO:0034484 | GO-bp | Annotation by Michelle Graham. GO Biological Process: raffinose catabolic process | SoyBase | N/A | ISS |
| GO:0080167 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to karrikin | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0004553 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds | SoyBase | N/A | ISS |
| GO:0052692 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: raffinose alpha-galactosidase activity | SoyBase | N/A | ISS |
| PF05691 | PFAM | Raffinose synthase or seed inhibition protein Sip1 | JGI | ISS | |
| UniRef100_Q25AK2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: H0510A06.3 protein n=1 Tax=Oryza sativa RepID=Q25AK2_ORYSA | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002339AB0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002339AB0 related cluster n=1 Tax=unknown RepID=UPI0002339AB0 | SoyBase | E_val: 0 | ISS |
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Glyma04g36410 not represented in the dataset |
Glyma04g36410 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g18480 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g190000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g36410.2 sequence type=transcript gene model=Glyma04g36410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATTGTGATCAAACCTTGCTACTTGAAATTCCAAGCTGATTCTACCTATCACACACTCTCAAACTTGGCGTAATCACGTTCTGTTACTTCAGCTGTATATCTTTTCTATTCCATCTTCAACTCCACTTTAACCTTCAGCTTCATATACGACGATCGCCGGCTAAAATAATATGATGATCACGGCGGCGCCGACTGTGAATGACGAGTGCCTTACGGTGAGGGGCAGGGCGGTTTTGACCCATGTCCCCGGAAACATTGTTGTTTCTCCGGTTGGAACAGAGTCCGCTTTCTTGGGTGCAACTTCAAGCATTTCAAGTTCACGTCATGTTTTTGTTCTTGGAATTCTTCAGGGATATAAGTTGCTATCTTTGTTCAGAGTTAAAATCTGGTGGATGATACCACGTATAGGGAGATCTGCAAGTGATGTTCCAATGGAAACTCAATTTCTGCTCCTTGAAGCAAGAGAAGAGTCTGCCCTTGAGGATGAGCTTTCTTCTGACTCTGAAGAGCCAACTACAGAGAACAGTTGCTACATTCTCTTCTTGCCTGTTTTGGATGGACAGTTTCGCGCAACTTTGCAGGGAACTCAATCAAATGAGCTCCAGTTCTGCATTGAAAGTGGAGATGCTCATGTTCAAACTTCCCAATCACTAGAAGCAGTATTTGTAAATTCAGGGGACAATCCATTTGAGTTAATCAGGGATTCTATCAAGATGTTGGAGAAACACAAAGGAACTTTCTGTCGTCTTGAAAACAAGAGGATTCCTGCACATCTTGACTGGTTTGGATGGTGCACTTGGGATGCTTTTTACACTGAAGTGAGTCCAAATGGAATAAGAGAGGGCCTTCAGAGTTTCTCAAATGGAGGTTGTTCACCGAAGTTTATCATCATTGATGATGGATGGCAAGAGACCCTGAACACTTTTCACAAAGAAGGTGAACCAGTGATTGAGGGAACCCAGTTTGCAACCAGACTGATAGACATTAAAGAAAACAAAAAGTTCACCGATGCAGGCTCCTACAATTCTTGCGACAATCTCCACAATTTTGTTGATTCCATTAAACAGAATATGAATGTAAAATACGTTTACATGTGGCATGCTTTAGCTGGTTATTGGGGAGGTTTACTTCCATCATCAGATACAATGAAGAAATATAATCCAAAGATTGTATATCCAATTCAGTCACCTGGTACCACAGGGAACCTTAGAGATATAGCCATGGATAGCTTGGAAAAATATGGAGTGGGAGTCATTGACCCAGAAAAACTATATGACTTTTACAATGATTACCACAGTTACCTTGCCAGTTGTGGTGTGGATGGAGTCAAAGTAGATGTCCAAAATTTGATAGAAACGTTGGGTTCTGGGTACGGTGGTCGCGTTTCGTTGAGCAAACGGTATCAAGAAGCACTAGAGCAATCTGTAACAAGGAACTTTAAGGACAACAATCTGATTTGTTGCATGTGTCACAACTCTGATTCAATTTACAGCTCAAAGAATAGTGCAGCAGTAAGAGCATCTGAGGATTTCATGCCAAGAGAACCAACATTGCAGACCTTACACATCGCCTCTGTCGCGTTTAACAGTCTTCTTCTGGGAGAGATATTTGTGCCAGACTGGGACATGTTCCATAGCAAGCACGAGACAGCCGAGTTCCATGCTGCAGCAAGAGCAGTAGGTGGATGTGCAGTATATGTCAGTGACAAGCCTGGAAATCATGATTTTAAAATCCTCGAGAAGCTAGTGCTGGCTGATGGATCAGTCTTGAGAGCAAGATATGCCGGCCGCCCTACTCGAGATTGTTTATTTGAAGACCCTGTAATGGATGGTAAAAGGCGTCTTCAATTGCCAAGGAGCAGGATGCTGGCCACTGAAATCATTGGAAGCCGCACCCTTGCGCATAACCATTTCAGGGAAAGTGAGACCCCTTGATGTTGAATTTCTTGAAGAGGTTGCAGGTGAAAATTGGAATGGAGACTGCATAGTATATGCCTTCAATGCAGGCTTGCTTTCCAAGATATCTTGCAGAGGAAAACTTGAAGTGTCCCTGGAGACTCTCCATTGTGAAATATATACAGTATCTCCAATAAGGGTGTTTGGTCATGATGTGCTATTCGCACCAATAGGATTGCTTGACATGTACAATTCAGGAGGAGCAGTAGAAGCCTTGGACTGCACCATGGATGTTGCACAATGCATAATCAAAATCAAAGGCAGAGGATGTGGTCGTTTTGGAGCCTACTCCAACGTTAGACCGAAACTTTGTGTAGTGGACATGAAGGAGGAAGAGTTCTTCTACAACCGTGAAGATGGATTATTGACTATTACACTTGCTGGTGAAGGCAACTCCAAGGACATAGAATTTGTATACTGAGGTGAAGTCAAAGTGAGTCTATTCCGATTCTTCTTCAGTGTCATTTTTTATTTACCTAACCCCGGATGCAAGCATATATAGAATTTTTGTTGTTGTAAGCAATGGAAAAGAGTTGCTTAATTTTGGTCGTGTTATGGTGCTGTATATATTTCAAGCATCATCTGTAACCAGTGATGTGACACGGTCTTATTCTTTGTGAGAACTAAAAAGAAGTAATGTGTTATCATTGGATCTATATAACAGAGATTTAAGAAATTTTAGTATCA
>Glyma04g36410.1 sequence type=CDS gene model=Glyma04g36410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGATCACGGCGGCGCCGACTGTGAATGACGAGTGCCTTACGGTGAGGGGCAGGGCGGTTTTGACCCATGTCCCCGGAAACATTGTTGTTTCTCCGGTTGGAACAGAGTCCGCTTTCTTGGGTGCAACTTCAAGCATTTCAAGTTCACGTCATGTTTTTGTTCTTGGAATTCTTCAGGGATATAAGTTGCTATCTTTGTTCAGAGTTAAAATCTGGTGGATGATACCACGTATAGGGAGATCTGCAAGTGATGTTCCAATGGAAACTCAATTTCTGCTCCTTGAAGCAAGAGAAGAGTCTGCCCTTGAGGATGAGCTTTCTTCTGACTCTGAAGAGCCAACTACAGAGAACAGTTGCTACATTCTCTTCTTGCCTGTTTTGGATGGACAGTTTCGCGCAACTTTGCAGGGAACTCAATCAAATGAGCTCCAGTTCTGCATTGAAAGTGGAGATGCTCATGTTCAAACTTCCCAATCACTAGAAGCAGTATTTGTAAATTCAGGGGACAATCCATTTGAGTTAATCAGGGATTCTATCAAGATGTTGGAGAAACACAAAGGAACTTTCTGTCGTCTTGAAAACAAGAGGATTCCTGCACATCTTGACTGGTTTGGATGGTGCACTTGGGATGCTTTTTACACTGAAGTGAGTCCAAATGGAATAAGAGAGGGCCTTCAGAGTTTCTCAAATGGAGGTTGTTCACCGAAGTTTATCATCATTGATGATGGATGGCAAGAGACCCTGAACACTTTTCACAAAGAAGGTGAACCAGTGATTGAGGGAACCCAGTTTGCAACCAGACTGATAGACATTAAAGAAAACAAAAAGTTCACCGATGCAGGCTCCTACAATTCTTGCGACAATCTCCACAATTTTGTTGATTCCATTAAACAGAATATGAATGTAAAATACGTTTACATGTGGCATGCTTTAGCTGGTTATTGGGGAGGTTTACTTCCATCATCAGATACAATGAAGAAATATAATCCAAAGATTGTATATCCAATTCAGTCACCTGGTACCACAGGGAACCTTAGAGATATAGCCATGGATAGCTTGGAAAAATATGGAGTGGGAGTCATTGACCCAGAAAAACTATATGACTTTTACAATGATTACCACAGTTACCTTGCCAGTTGTGGTGTGGATGGAGTCAAAGTAGATGTCCAAAATTTGATAGAAACGTTGGGTTCTGGGTACGGTGGTCGCGTTTCGTTGAGCAAACGGTATCAAGAAGCACTAGAGCAATCTGTAACAAGGAACTTTAAGGACAACAATCTGATTTGTTGCATGTGTCACAACTCTGATTCAATTTACAGCTCAAAGAATAGTGCAGCAGTAAGAGCATCTGAGGATTTCATGCCAAGAGAACCAACATTGCAGACCTTACACATCGCCTCTGTCGCGTTTAACAGTCTTCTTCTGGGAGAGATATTTGTGCCAGACTGGGACATGTTCCATAGCAAGCACGAGACAGCCGAGTTCCATGCTGCAGCAAGAGCAGTAGGTGGATGTGCAGTATATGTCAGTGACAAGCCTGGAAATCATGATTTTAAAATCCTCGAGAAGCTAGTGCTGGCTGATGGATCAGTCTTGAGAGCAAGATATGCCGGCCGCCCTACTCGAGATTGTTTATTTGAAGACCCTGTAATGGATGGTAAAAGTCTGCTGAAAATTTGGAATTTGAATGTTCTGACCGGGGTGGTAGGCGTCTTCAATTGCCAAGGAGCAGGATGCTGGCCACTGAAATCATTGGAAGCCGCACCCTTGCGCATAACCATTTCAGGGAAAGTGAGACCCCTTGATGTTGAATTTCTTGAAGAGGTTGCAGGTGAAAATTGGAATGGAGACTGCATAGTATATGCCTTCAATGCAGGCTTGCTTTCCAAGATATCTTGCAGAGGAAAACTTGAAGTGTCCCTGGAGACTCTCCATTGTGAAATATATACAGTATCTCCAATAAGGGTGTTTGGTCATGATGTGCTATTCGCACCAATAGGATTGCTTGACATGTACAATTCAGGAGGAGCAGTAGAAGCCTTGGACTGCACCATGGATGTTGCACAATGCATAATCAAAATCAAAGGCAGAGGATGTGGTCGTTTTGGAGCCTACTCCAACGTTAGACCGAAACTTTGTGTAGTGGACATGAAGGAGGAAGAGTTCTTCTACAACCGTGAAGATGGATTATTGACTATTACACTTGCTGGTGAAGGCAACTCCAAGGACATAGAATTTGTATACTGA >Glyma04g36410.2 sequence type=CDS gene model=Glyma04g36410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGATCACGGCGGCGCCGACTGTGAATGACGAGTGCCTTACGGTGAGGGGCAGGGCGGTTTTGACCCATGTCCCCGGAAACATTGTTGTTTCTCCGGTTGGAACAGAGTCCGCTTTCTTGGGTGCAACTTCAAGCATTTCAAGTTCACGTCATGTTTTTGTTCTTGGAATTCTTCAGGGATATAAGTTGCTATCTTTGTTCAGAGTTAAAATCTGGTGGATGATACCACGTATAGGGAGATCTGCAAGTGATGTTCCAATGGAAACTCAATTTCTGCTCCTTGAAGCAAGAGAAGAGTCTGCCCTTGAGGATGAGCTTTCTTCTGACTCTGAAGAGCCAACTACAGAGAACAGTTGCTACATTCTCTTCTTGCCTGTTTTGGATGGACAGTTTCGCGCAACTTTGCAGGGAACTCAATCAAATGAGCTCCAGTTCTGCATTGAAAGTGGAGATGCTCATGTTCAAACTTCCCAATCACTAGAAGCAGTATTTGTAAATTCAGGGGACAATCCATTTGAGTTAATCAGGGATTCTATCAAGATGTTGGAGAAACACAAAGGAACTTTCTGTCGTCTTGAAAACAAGAGGATTCCTGCACATCTTGACTGGTTTGGATGGTGCACTTGGGATGCTTTTTACACTGAAGTGAGTCCAAATGGAATAAGAGAGGGCCTTCAGAGTTTCTCAAATGGAGGTTGTTCACCGAAGTTTATCATCATTGATGATGGATGGCAAGAGACCCTGAACACTTTTCACAAAGAAGGTGAACCAGTGATTGAGGGAACCCAGTTTGCAACCAGACTGATAGACATTAAAGAAAACAAAAAGTTCACCGATGCAGGCTCCTACAATTCTTGCGACAATCTCCACAATTTTGTTGATTCCATTAAACAGAATATGAATGTAAAATACGTTTACATGTGGCATGCTTTAGCTGGTTATTGGGGAGGTTTACTTCCATCATCAGATACAATGAAGAAATATAATCCAAAGATTGTATATCCAATTCAGTCACCTGGTACCACAGGGAACCTTAGAGATATAGCCATGGATAGCTTGGAAAAATATGGAGTGGGAGTCATTGACCCAGAAAAACTATATGACTTTTACAATGATTACCACAGTTACCTTGCCAGTTGTGGTGTGGATGGAGTCAAAGTAGATGTCCAAAATTTGATAGAAACGTTGGGTTCTGGGTACGGTGGTCGCGTTTCGTTGAGCAAACGGTATCAAGAAGCACTAGAGCAATCTGTAACAAGGAACTTTAAGGACAACAATCTGATTTGTTGCATGTGTCACAACTCTGATTCAATTTACAGCTCAAAGAATAGTGCAGCAGTAAGAGCATCTGAGGATTTCATGCCAAGAGAACCAACATTGCAGACCTTACACATCGCCTCTGTCGCGTTTAACAGTCTTCTTCTGGGAGAGATATTTGTGCCAGACTGGGACATGTTCCATAGCAAGCACGAGACAGCCGAGTTCCATGCTGCAGCAAGAGCAGTAGGTGGATGTGCAGTATATGTCAGTGACAAGCCTGGAAATCATGATTTTAAAATCCTCGAGAAGCTAGTGCTGGCTGATGGATCAGTCTTGAGAGCAAGATATGCCGGCCGCCCTACTCGAGATTGTTTATTTGAAGACCCTGTAATGGATGGTAAAAGGCGTCTTCAATTGCCAAGGAGCAGGATGCTGGCCACTGAAATCATTGGAAGCCGCACCCTTGCGCATAACCATTTCAGGGAAAGTGAGACCCCTTGA
>Glyma04g36410.1 sequence type=predicted peptide gene model=Glyma04g36410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMITAAPTVNDECLTVRGRAVLTHVPGNIVVSPVGTESAFLGATSSISSSRHVFVLGILQGYKLLSLFRVKIWWMIPRIGRSASDVPMETQFLLLEAREESALEDELSSDSEEPTTENSCYILFLPVLDGQFRATLQGTQSNELQFCIESGDAHVQTSQSLEAVFVNSGDNPFELIRDSIKMLEKHKGTFCRLENKRIPAHLDWFGWCTWDAFYTEVSPNGIREGLQSFSNGGCSPKFIIIDDGWQETLNTFHKEGEPVIEGTQFATRLIDIKENKKFTDAGSYNSCDNLHNFVDSIKQNMNVKYVYMWHALAGYWGGLLPSSDTMKKYNPKIVYPIQSPGTTGNLRDIAMDSLEKYGVGVIDPEKLYDFYNDYHSYLASCGVDGVKVDVQNLIETLGSGYGGRVSLSKRYQEALEQSVTRNFKDNNLICCMCHNSDSIYSSKNSAAVRASEDFMPREPTLQTLHIASVAFNSLLLGEIFVPDWDMFHSKHETAEFHAAARAVGGCAVYVSDKPGNHDFKILEKLVLADGSVLRARYAGRPTRDCLFEDPVMDGKSLLKIWNLNVLTGVVGVFNCQGAGCWPLKSLEAAPLRITISGKVRPLDVEFLEEVAGENWNGDCIVYAFNAGLLSKISCRGKLEVSLETLHCEIYTVSPIRVFGHDVLFAPIGLLDMYNSGGAVEALDCTMDVAQCIIKIKGRGCGRFGAYSNVRPKLCVVDMKEEEFFYNREDGLLTITLAGEGNSKDIEFVY* >Glyma04g36410.2 sequence type=predicted peptide gene model=Glyma04g36410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMITAAPTVNDECLTVRGRAVLTHVPGNIVVSPVGTESAFLGATSSISSSRHVFVLGILQGYKLLSLFRVKIWWMIPRIGRSASDVPMETQFLLLEAREESALEDELSSDSEEPTTENSCYILFLPVLDGQFRATLQGTQSNELQFCIESGDAHVQTSQSLEAVFVNSGDNPFELIRDSIKMLEKHKGTFCRLENKRIPAHLDWFGWCTWDAFYTEVSPNGIREGLQSFSNGGCSPKFIIIDDGWQETLNTFHKEGEPVIEGTQFATRLIDIKENKKFTDAGSYNSCDNLHNFVDSIKQNMNVKYVYMWHALAGYWGGLLPSSDTMKKYNPKIVYPIQSPGTTGNLRDIAMDSLEKYGVGVIDPEKLYDFYNDYHSYLASCGVDGVKVDVQNLIETLGSGYGGRVSLSKRYQEALEQSVTRNFKDNNLICCMCHNSDSIYSSKNSAAVRASEDFMPREPTLQTLHIASVAFNSLLLGEIFVPDWDMFHSKHETAEFHAAARAVGGCAVYVSDKPGNHDFKILEKLVLADGSVLRARYAGRPTRDCLFEDPVMDGKRRLQLPRSRMLATEIIGSRTLAHNHFRESETP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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