Report for Sequence Feature Glyma04g36310
Feature Type: gene_model
Chromosome: Gm04
Start: 42875964
stop: 42878158
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g36310
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G45590 AT
Annotation by Michelle Graham. TAIR10: splicing endonuclease 1 | chr3:16733062-16733775 FORWARD LENGTH=237
SoyBase E_val: 3.00E-87 ISS
GO:0006388 GO-bp
Annotation by Michelle Graham. GO Biological Process: tRNA splicing, via endonucleolytic cleavage and ligation
SoyBase N/A ISS
GO:0000214 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: tRNA-intron endonuclease complex
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0000213 GO-mf
Annotation by Michelle Graham. GO Molecular Function: tRNA-intron endonuclease activity
SoyBase N/A ISS
GO:0003676 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding
SoyBase N/A ISS
GO:0004518 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nuclease activity
SoyBase N/A ISS
KOG4685
KOG
tRNA splicing endonuclease SEN2
JGI ISS
PTHR21227 Panther
TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2
JGI ISS
PF01974 PFAM
tRNA intron endonuclease, catalytic C-terminal domain
JGI ISS
PF02778 PFAM
tRNA intron endonuclease, N-terminal domain
JGI ISS
UniRef100_A2Q3E8 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: TRNA intron endonuclease, catalytic C-terminal n=1 Tax=Medicago truncatula RepID=A2Q3E8_MEDTR
SoyBase E_val: 5.00E-141 ISS
UniRef100_I1JXC8 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JXC8_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma04g36310
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Gene model name correspondences to Glyma04g36310 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g189200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g36310
Transcripts of Glyma04g36310
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g36310.4 sequence type=transcript gene model=Glyma04g36310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TTTAAATATTAAAACCTCAAGGAATATAAATAAAAAATAGGTCAATGGGTATGAGGTGGAGGGAGTACTTTCTTCCCAAGTCCAAATCCATTCCATTCATTTTGCTGTCTCTCTGTTTTCAACAAACGTCCACAACAACACATTTCGCCGTTTCAAATTACTACTTGACACCGGACGTTAGACCAGAGATAGAAGAAGGGAGAGTGGAAAATTTCGGAGGCAAGAGGGACGGCGCGGACGCTTTCTAGCGATAGTTTTAAGTGTCGCTTCGCAAATCGCCACAAAAAAACACGCGTGACGGGAGAGGTGCTCATATTTAGTGTCCATCGTGTCTTGAAAAGGATTGCTTCCAAAGGAAGAGAGTCTTGCGGTGTAGCGGCGCTATTGACTACATAGCTTATATCCAAATGGCACCAAGATGGAAAGGAAAAGATGCAAAAGCTAAAAAGGATGCACAAGCTGAAGCACTCAAGGAACCCATGTCAAAGATTGTATCTCAAATTCAGTCTTCTCTAGTTCAATCAGATACTCGTGGATTTCTCTCTGGTAGTAGTGTACACTTAGTAGTGGAAGCAGAACAACTTCATTTGCTCGATAAAGCATGTTTTGGCTCACCTGTGAGAACAGTTGAAAAGGACAAACCCCGGTTTCAATTAAGCTTTGAGGAGGCATTCTACCTATGCTATTCCTTGAAATGCCTTAAGATTAATAATGACAGTGATGATACTAGTTCCCAAACCGATGAAGAGCTGTGGCATTACATGAAGTCAAAGAAAGAAACATTCCCCTGTTTCTACAAGGCTTATTCCCACCTGAGAATGAAAAACTGGGTAGTGAGGTCAGGAGCTCAGTATGGTGCAGATTTCGTTGTCTATCGTCACCATCCAGCTCGGGTCCATTCGGAGTATGGTGTGCTTGTTTTATCAGATGAGGAAGATAAAGATCTAAATGGAAGGTTGAGAGTATGGTCTGATGTTCATTGCACAACTCGACTTCTTGGAGGCGTTGCAAAAATCTTATTGGTTTTGTATGTCAATAGAAATGGTGGCAGCAATGAGTCTCCATTATGTTTGGCAAACTACACCGTTGAAGAGCGCACAATCACCAGATGGAATCCAGAACAATGCCGCGAAAAGATGGTAGTTCATGCTAATTCTGATAACGGAACTGGGTAATACTTCATCATATGGACACAACAAAATATATCAAACATGAAAAGAAAGGTATTTTTTTATTGTCTTTGTCCAAAGATATTAGTTATTCAAGCATAACAATATTCTTAAAGATTTATGCATTTATAATATTCTTAAGATTTCATTCCTTTTTTATTTAAAGTTATTGTCGTTTTACTTTTTATTTTTGAAGGTTCTATATGCT
>Glyma04g36310.5 sequence type=transcript gene model=Glyma04g36310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TTTAAATATTAAAACCTCAAGGAATATAAATAAAAAATAGGTCAATGGGTATGAGGTGGAGGGAGTACTTTCTTCCCAAGTCCAAATCCATTCCATTCATTTTGCTGTCTCTCTGTTTTCAACAAACGTCCACAACAACACATTTCGCCGTTTCAAATTACTACTTGACACCGTCCAAATGGCACCAAGATGGAAAGGAAAAGATGCAAAAGCTAAAAAGGATGCACAAGCTGAAGCACTCAAGGAACCCATGTCAAAGATTGTATCTCAAATTCAGTCTTCTCTAGTTCAATCAGATACTCGTGGATTTCTCTCTGGTAGTAGTGTACACTTAGTAGTGGAAGCAGAACAACTTCATTTGCTCGATAAAGCATGTTTTGGCTCACCTGTGAGAACAGTTGAAAAGGACAAACCCCGGTTTCAATTAAGCTTTGAGGAGGCATTCTACCTATGCTATTCCTTGAAATGCCTTAAGATTAATAATGACAGTGATGATACTAGTTCCCAAACCGATGAAGAGCTGTGGCATTACATGAAGTCAAAGAAAGAAACATTCCCCTGTTTCTACAAGGCTTATTCCCACCTGAGAATGAAAAACTGGGTAGTGAGGTCAGGAGCTCAGTATGGTGCAGATTTCGTTGTCTATCGTCACCATCCAGCTCGGGTCCATTCGGAGTATGGTGTGCTTGTTTTATCAGATGAGGAAGATAAAGATCTAAATGGAAGGTTGAGAGTATGGTCTGATGTTCATTGCACAACTCGACTTCTTGGAGGCGTTGCAAAAATCTTATTGGTTTTGTATGTCAATAGAAATGGTGGCAGCAATGAGTCTCCATTATGTTTGGCAAACTACACCGTTGAAGAGCGCACAATCACCAGATGGAATCCAGAACAATGCCGCGAAAAGATGGTAGTTCATGCTAATTCTGATAACGGAACTGGGTAATACTTCATCATATGGACACAACAAAATATATCAAACATGAAAAGAAAGGTATTTTTTTATTGTCTTTGTCCAAAGATATTAGTTATTCAAGCATAACAATATTCTTAAAGATTTATGCATTTATAATATTCTTAAGATTTCATTCCTTTTTTATTTAAAGTTATTGTCGTTTTACTTTTTATTTTTGAAGGTTCTATATGCT
Coding sequences of Glyma04g36310
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g36310.3 sequence type=CDS gene model=Glyma04g36310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCACCAAGATGGAAAGGAAAAGATGCAAAAGCTAAAAAGGATGCACAAGCTGAAGCACTCAAGGAACCCATGTCAAAGATTGTATCTCAAATTCAGTCTTCTCTAGTTCAATCAGATACTCGTGGATTTCTCTCTGGTAGTAGTGTACACTTAGTAGTGGAAGCAGAACAACTTCATTTGCTCGATAAAGCATGTTTTGGCTCACCTGTGAGAACAGTTGAAAAGGACAAACCCCGGTTTCAATTAAGCTTTGAGGAGGCATTCTACCTATGCTATTCCTTGAAATGCCTTAAGATTAATAATGACAGTGATGATACTAGTTCCCAAACCGATGAAGAGCTGTGGCATTACATGAAGTCAAAGAAAGAAACATTCCCCTGTTTCTACAAGGCTTATTCCCACCTGAGAATGAAAAACTGGGTAGTGAGGTCAGGAGCTCAGTATGGTGCAGATTTCGTTGTCTATCGTCACCATCCAGCTCGGGTCCATTCGGAGTATGGTGTGCTTGTTTTATCAGATGAGGAAGATAAAGATCTAAATGGAAGGTTGAGAGTATGGTCTGATGTTCATTGCACAACTCGACTTCTTGGAGGCGTTGCAAAAATCTTATTGGTTTTGTATGTCAATAGAAATGGTGGCAGCAATGAGTCTCCATTATGTTTGGCAAACTACACCGTTGAAGAGCGCACAATCACCAGATGGAATCCAGAACAATGCCGCGAAAAGATGGTAGTTCATGCTAATTCTGATAACGGAACTGGGTAA
>Glyma04g36310.4 sequence type=CDS gene model=Glyma04g36310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCACCAAGATGGAAAGGAAAAGATGCAAAAGCTAAAAAGGATGCACAAGCTGAAGCACTCAAGGAACCCATGTCAAAGATTGTATCTCAAATTCAGTCTTCTCTAGTTCAATCAGATACTCGTGGATTTCTCTCTGGTAGTAGTGTACACTTAGTAGTGGAAGCAGAACAACTTCATTTGCTCGATAAAGCATGTTTTGGCTCACCTGTGAGAACAGTTGAAAAGGACAAACCCCGGTTTCAATTAAGCTTTGAGGAGGCATTCTACCTATGCTATTCCTTGAAATGCCTTAAGATTAATAATGACAGTGATGATACTAGTTCCCAAACCGATGAAGAGCTGTGGCATTACATGAAGTCAAAGAAAGAAACATTCCCCTGTTTCTACAAGGCTTATTCCCACCTGAGAATGAAAAACTGGGTAGTGAGGTCAGGAGCTCAGTATGGTGCAGATTTCGTTGTCTATCGTCACCATCCAGCTCGGGTCCATTCGGAGTATGGTGTGCTTGTTTTATCAGATGAGGAAGATAAAGATCTAAATGGAAGGTTGAGAGTATGGTCTGATGTTCATTGCACAACTCGACTTCTTGGAGGCGTTGCAAAAATCTTATTGGTTTTGTATGTCAATAGAAATGGTGGCAGCAATGAGTCTCCATTATGTTTGGCAAACTACACCGTTGAAGAGCGCACAATCACCAGATGGAATCCAGAACAATGCCGCGAAAAGATGGTAGTTCATGCTAATTCTGATAACGGAACTGGGTAA
>Glyma04g36310.5 sequence type=CDS gene model=Glyma04g36310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCACCAAGATGGAAAGGAAAAGATGCAAAAGCTAAAAAGGATGCACAAGCTGAAGCACTCAAGGAACCCATGTCAAAGATTGTATCTCAAATTCAGTCTTCTCTAGTTCAATCAGATACTCGTGGATTTCTCTCTGGTAGTAGTGTACACTTAGTAGTGGAAGCAGAACAACTTCATTTGCTCGATAAAGCATGTTTTGGCTCACCTGTGAGAACAGTTGAAAAGGACAAACCCCGGTTTCAATTAAGCTTTGAGGAGGCATTCTACCTATGCTATTCCTTGAAATGCCTTAAGATTAATAATGACAGTGATGATACTAGTTCCCAAACCGATGAAGAGCTGTGGCATTACATGAAGTCAAAGAAAGAAACATTCCCCTGTTTCTACAAGGCTTATTCCCACCTGAGAATGAAAAACTGGGTAGTGAGGTCAGGAGCTCAGTATGGTGCAGATTTCGTTGTCTATCGTCACCATCCAGCTCGGGTCCATTCGGAGTATGGTGTGCTTGTTTTATCAGATGAGGAAGATAAAGATCTAAATGGAAGGTTGAGAGTATGGTCTGATGTTCATTGCACAACTCGACTTCTTGGAGGCGTTGCAAAAATCTTATTGGTTTTGTATGTCAATAGAAATGGTGGCAGCAATGAGTCTCCATTATGTTTGGCAAACTACACCGTTGAAGAGCGCACAATCACCAGATGGAATCCAGAACAATGCCGCGAAAAGATGGTAGTTCATGCTAATTCTGATAACGGAACTGGGTAA
Predicted protein sequences of Glyma04g36310
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g36310.3 sequence type=predicted peptide gene model=Glyma04g36310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAPRWKGKDAKAKKDAQAEALKEPMSKIVSQIQSSLVQSDTRGFLSGSSVHLVVEAEQLHLLDKACFGSPVRTVEKDKPRFQLSFEEAFYLCYSLKCLKINNDSDDTSSQTDEELWHYMKSKKETFPCFYKAYSHLRMKNWVVRSGAQYGADFVVYRHHPARVHSEYGVLVLSDEEDKDLNGRLRVWSDVHCTTRLLGGVAKILLVLYVNRNGGSNESPLCLANYTVEERTITRWNPEQCREKMVVHANSDNGTG*
>Glyma04g36310.4 sequence type=predicted peptide gene model=Glyma04g36310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAPRWKGKDAKAKKDAQAEALKEPMSKIVSQIQSSLVQSDTRGFLSGSSVHLVVEAEQLHLLDKACFGSPVRTVEKDKPRFQLSFEEAFYLCYSLKCLKINNDSDDTSSQTDEELWHYMKSKKETFPCFYKAYSHLRMKNWVVRSGAQYGADFVVYRHHPARVHSEYGVLVLSDEEDKDLNGRLRVWSDVHCTTRLLGGVAKILLVLYVNRNGGSNESPLCLANYTVEERTITRWNPEQCREKMVVHANSDNGTG*
>Glyma04g36310.5 sequence type=predicted peptide gene model=Glyma04g36310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAPRWKGKDAKAKKDAQAEALKEPMSKIVSQIQSSLVQSDTRGFLSGSSVHLVVEAEQLHLLDKACFGSPVRTVEKDKPRFQLSFEEAFYLCYSLKCLKINNDSDDTSSQTDEELWHYMKSKKETFPCFYKAYSHLRMKNWVVRSGAQYGADFVVYRHHPARVHSEYGVLVLSDEEDKDLNGRLRVWSDVHCTTRLLGGVAKILLVLYVNRNGGSNESPLCLANYTVEERTITRWNPEQCREKMVVHANSDNGTG*