Glyma04g36310 - SoyBase

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Report for Sequence Feature Glyma04g36310

Feature Type:	gene_model
Chromosome:	Gm04
Start:	42875964
stop:	42878158
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g36310

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G45590	AT	Annotation by Michelle Graham. TAIR10: splicing endonuclease 1 \| chr3:16733062-16733775 FORWARD LENGTH=237	SoyBase	E_val: 3.00E-87	ISS
GO:0006388	GO-bp	Annotation by Michelle Graham. GO Biological Process: tRNA splicing, via endonucleolytic cleavage and ligation	SoyBase	N/A	ISS
GO:0000214	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: tRNA-intron endonuclease complex	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0000213	GO-mf	Annotation by Michelle Graham. GO Molecular Function: tRNA-intron endonuclease activity	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0004518	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nuclease activity	SoyBase	N/A	ISS
KOG4685	KOG	tRNA splicing endonuclease SEN2	JGI		ISS
PTHR21227	Panther	TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2	JGI		ISS
PF01974	PFAM	tRNA intron endonuclease, catalytic C-terminal domain	JGI		ISS
PF02778	PFAM	tRNA intron endonuclease, N-terminal domain	JGI		ISS
UniRef100_A2Q3E8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: TRNA intron endonuclease, catalytic C-terminal n=1 Tax=Medicago truncatula RepID=A2Q3E8_MEDTR	SoyBase	E_val: 5.00E-141	ISS
UniRef100_I1JXC8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JXC8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g36310

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g36310 not represented in the dataset	Glyma04g36310 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g36310 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g189200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g36310

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g36310

Limit To All Plant Sequences

>Glyma04g36310.4   sequence type=transcript   gene model=Glyma04g36310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTAAATATTAAAACCTCAAGGAATATAAATAAAAAATAGGTCAATGGGTATGAGGTGGAGGGAGTACTTTCTTCCCAAGTCCAAATCCATTCCATTCATTTTGCTGTCTCTCTGTTTTCAACAAACGTCCACAACAACACATTTCGCCGTTTCAAATTACTACTTGACACCGGACGTTAGACCAGAGATAGAAGAAGGGAGAGTGGAAAATTTCGGAGGCAAGAGGGACGGCGCGGACGCTTTCTAGCGATAGTTTTAAGTGTCGCTTCGCAAATCGCCACAAAAAAACACGCGTGACGGGAGAGGTGCTCATATTTAGTGTCCATCGTGTCTTGAAAAGGATTGCTTCCAAAGGAAGAGAGTCTTGCGGTGTAGCGGCGCTATTGACTACATAGCTTATATCCAAATGGCACCAAGATGGAAAGGAAAAGATGCAAAAGCTAAAAAGGATGCACAAGCTGAAGCACTCAAGGAACCCATGTCAAAGATTGTATCTCAAATTCAGTCTTCTCTAGTTCAATCAGATACTCGTGGATTTCTCTCTGGTAGTAGTGTACACTTAGTAGTGGAAGCAGAACAACTTCATTTGCTCGATAAAGCATGTTTTGGCTCACCTGTGAGAACAGTTGAAAAGGACAAACCCCGGTTTCAATTAAGCTTTGAGGAGGCATTCTACCTATGCTATTCCTTGAAATGCCTTAAGATTAATAATGACAGTGATGATACTAGTTCCCAAACCGATGAAGAGCTGTGGCATTACATGAAGTCAAAGAAAGAAACATTCCCCTGTTTCTACAAGGCTTATTCCCACCTGAGAATGAAAAACTGGGTAGTGAGGTCAGGAGCTCAGTATGGTGCAGATTTCGTTGTCTATCGTCACCATCCAGCTCGGGTCCATTCGGAGTATGGTGTGCTTGTTTTATCAGATGAGGAAGATAAAGATCTAAATGGAAGGTTGAGAGTATGGTCTGATGTTCATTGCACAACTCGACTTCTTGGAGGCGTTGCAAAAATCTTATTGGTTTTGTATGTCAATAGAAATGGTGGCAGCAATGAGTCTCCATTATGTTTGGCAAACTACACCGTTGAAGAGCGCACAATCACCAGATGGAATCCAGAACAATGCCGCGAAAAGATGGTAGTTCATGCTAATTCTGATAACGGAACTGGGTAATACTTCATCATATGGACACAACAAAATATATCAAACATGAAAAGAAAGGTATTTTTTTATTGTCTTTGTCCAAAGATATTAGTTATTCAAGCATAACAATATTCTTAAAGATTTATGCATTTATAATATTCTTAAGATTTCATTCCTTTTTTATTTAAAGTTATTGTCGTTTTACTTTTTATTTTTGAAGGTTCTATATGCT

>Glyma04g36310.5   sequence type=transcript   gene model=Glyma04g36310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTAAATATTAAAACCTCAAGGAATATAAATAAAAAATAGGTCAATGGGTATGAGGTGGAGGGAGTACTTTCTTCCCAAGTCCAAATCCATTCCATTCATTTTGCTGTCTCTCTGTTTTCAACAAACGTCCACAACAACACATTTCGCCGTTTCAAATTACTACTTGACACCGTCCAAATGGCACCAAGATGGAAAGGAAAAGATGCAAAAGCTAAAAAGGATGCACAAGCTGAAGCACTCAAGGAACCCATGTCAAAGATTGTATCTCAAATTCAGTCTTCTCTAGTTCAATCAGATACTCGTGGATTTCTCTCTGGTAGTAGTGTACACTTAGTAGTGGAAGCAGAACAACTTCATTTGCTCGATAAAGCATGTTTTGGCTCACCTGTGAGAACAGTTGAAAAGGACAAACCCCGGTTTCAATTAAGCTTTGAGGAGGCATTCTACCTATGCTATTCCTTGAAATGCCTTAAGATTAATAATGACAGTGATGATACTAGTTCCCAAACCGATGAAGAGCTGTGGCATTACATGAAGTCAAAGAAAGAAACATTCCCCTGTTTCTACAAGGCTTATTCCCACCTGAGAATGAAAAACTGGGTAGTGAGGTCAGGAGCTCAGTATGGTGCAGATTTCGTTGTCTATCGTCACCATCCAGCTCGGGTCCATTCGGAGTATGGTGTGCTTGTTTTATCAGATGAGGAAGATAAAGATCTAAATGGAAGGTTGAGAGTATGGTCTGATGTTCATTGCACAACTCGACTTCTTGGAGGCGTTGCAAAAATCTTATTGGTTTTGTATGTCAATAGAAATGGTGGCAGCAATGAGTCTCCATTATGTTTGGCAAACTACACCGTTGAAGAGCGCACAATCACCAGATGGAATCCAGAACAATGCCGCGAAAAGATGGTAGTTCATGCTAATTCTGATAACGGAACTGGGTAATACTTCATCATATGGACACAACAAAATATATCAAACATGAAAAGAAAGGTATTTTTTTATTGTCTTTGTCCAAAGATATTAGTTATTCAAGCATAACAATATTCTTAAAGATTTATGCATTTATAATATTCTTAAGATTTCATTCCTTTTTTATTTAAAGTTATTGTCGTTTTACTTTTTATTTTTGAAGGTTCTATATGCT

Coding sequences of Glyma04g36310

Limit To All Plant Sequences

>Glyma04g36310.3   sequence type=CDS   gene model=Glyma04g36310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACCAAGATGGAAAGGAAAAGATGCAAAAGCTAAAAAGGATGCACAAGCTGAAGCACTCAAGGAACCCATGTCAAAGATTGTATCTCAAATTCAGTCTTCTCTAGTTCAATCAGATACTCGTGGATTTCTCTCTGGTAGTAGTGTACACTTAGTAGTGGAAGCAGAACAACTTCATTTGCTCGATAAAGCATGTTTTGGCTCACCTGTGAGAACAGTTGAAAAGGACAAACCCCGGTTTCAATTAAGCTTTGAGGAGGCATTCTACCTATGCTATTCCTTGAAATGCCTTAAGATTAATAATGACAGTGATGATACTAGTTCCCAAACCGATGAAGAGCTGTGGCATTACATGAAGTCAAAGAAAGAAACATTCCCCTGTTTCTACAAGGCTTATTCCCACCTGAGAATGAAAAACTGGGTAGTGAGGTCAGGAGCTCAGTATGGTGCAGATTTCGTTGTCTATCGTCACCATCCAGCTCGGGTCCATTCGGAGTATGGTGTGCTTGTTTTATCAGATGAGGAAGATAAAGATCTAAATGGAAGGTTGAGAGTATGGTCTGATGTTCATTGCACAACTCGACTTCTTGGAGGCGTTGCAAAAATCTTATTGGTTTTGTATGTCAATAGAAATGGTGGCAGCAATGAGTCTCCATTATGTTTGGCAAACTACACCGTTGAAGAGCGCACAATCACCAGATGGAATCCAGAACAATGCCGCGAAAAGATGGTAGTTCATGCTAATTCTGATAACGGAACTGGGTAA

>Glyma04g36310.4   sequence type=CDS   gene model=Glyma04g36310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACCAAGATGGAAAGGAAAAGATGCAAAAGCTAAAAAGGATGCACAAGCTGAAGCACTCAAGGAACCCATGTCAAAGATTGTATCTCAAATTCAGTCTTCTCTAGTTCAATCAGATACTCGTGGATTTCTCTCTGGTAGTAGTGTACACTTAGTAGTGGAAGCAGAACAACTTCATTTGCTCGATAAAGCATGTTTTGGCTCACCTGTGAGAACAGTTGAAAAGGACAAACCCCGGTTTCAATTAAGCTTTGAGGAGGCATTCTACCTATGCTATTCCTTGAAATGCCTTAAGATTAATAATGACAGTGATGATACTAGTTCCCAAACCGATGAAGAGCTGTGGCATTACATGAAGTCAAAGAAAGAAACATTCCCCTGTTTCTACAAGGCTTATTCCCACCTGAGAATGAAAAACTGGGTAGTGAGGTCAGGAGCTCAGTATGGTGCAGATTTCGTTGTCTATCGTCACCATCCAGCTCGGGTCCATTCGGAGTATGGTGTGCTTGTTTTATCAGATGAGGAAGATAAAGATCTAAATGGAAGGTTGAGAGTATGGTCTGATGTTCATTGCACAACTCGACTTCTTGGAGGCGTTGCAAAAATCTTATTGGTTTTGTATGTCAATAGAAATGGTGGCAGCAATGAGTCTCCATTATGTTTGGCAAACTACACCGTTGAAGAGCGCACAATCACCAGATGGAATCCAGAACAATGCCGCGAAAAGATGGTAGTTCATGCTAATTCTGATAACGGAACTGGGTAA

>Glyma04g36310.5   sequence type=CDS   gene model=Glyma04g36310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACCAAGATGGAAAGGAAAAGATGCAAAAGCTAAAAAGGATGCACAAGCTGAAGCACTCAAGGAACCCATGTCAAAGATTGTATCTCAAATTCAGTCTTCTCTAGTTCAATCAGATACTCGTGGATTTCTCTCTGGTAGTAGTGTACACTTAGTAGTGGAAGCAGAACAACTTCATTTGCTCGATAAAGCATGTTTTGGCTCACCTGTGAGAACAGTTGAAAAGGACAAACCCCGGTTTCAATTAAGCTTTGAGGAGGCATTCTACCTATGCTATTCCTTGAAATGCCTTAAGATTAATAATGACAGTGATGATACTAGTTCCCAAACCGATGAAGAGCTGTGGCATTACATGAAGTCAAAGAAAGAAACATTCCCCTGTTTCTACAAGGCTTATTCCCACCTGAGAATGAAAAACTGGGTAGTGAGGTCAGGAGCTCAGTATGGTGCAGATTTCGTTGTCTATCGTCACCATCCAGCTCGGGTCCATTCGGAGTATGGTGTGCTTGTTTTATCAGATGAGGAAGATAAAGATCTAAATGGAAGGTTGAGAGTATGGTCTGATGTTCATTGCACAACTCGACTTCTTGGAGGCGTTGCAAAAATCTTATTGGTTTTGTATGTCAATAGAAATGGTGGCAGCAATGAGTCTCCATTATGTTTGGCAAACTACACCGTTGAAGAGCGCACAATCACCAGATGGAATCCAGAACAATGCCGCGAAAAGATGGTAGTTCATGCTAATTCTGATAACGGAACTGGGTAA

Predicted protein sequences of Glyma04g36310

Limit To All Plant Sequences

>Glyma04g36310.3   sequence type=predicted peptide   gene model=Glyma04g36310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPRWKGKDAKAKKDAQAEALKEPMSKIVSQIQSSLVQSDTRGFLSGSSVHLVVEAEQLHLLDKACFGSPVRTVEKDKPRFQLSFEEAFYLCYSLKCLKINNDSDDTSSQTDEELWHYMKSKKETFPCFYKAYSHLRMKNWVVRSGAQYGADFVVYRHHPARVHSEYGVLVLSDEEDKDLNGRLRVWSDVHCTTRLLGGVAKILLVLYVNRNGGSNESPLCLANYTVEERTITRWNPEQCREKMVVHANSDNGTG*

>Glyma04g36310.4   sequence type=predicted peptide   gene model=Glyma04g36310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPRWKGKDAKAKKDAQAEALKEPMSKIVSQIQSSLVQSDTRGFLSGSSVHLVVEAEQLHLLDKACFGSPVRTVEKDKPRFQLSFEEAFYLCYSLKCLKINNDSDDTSSQTDEELWHYMKSKKETFPCFYKAYSHLRMKNWVVRSGAQYGADFVVYRHHPARVHSEYGVLVLSDEEDKDLNGRLRVWSDVHCTTRLLGGVAKILLVLYVNRNGGSNESPLCLANYTVEERTITRWNPEQCREKMVVHANSDNGTG*

>Glyma04g36310.5   sequence type=predicted peptide   gene model=Glyma04g36310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPRWKGKDAKAKKDAQAEALKEPMSKIVSQIQSSLVQSDTRGFLSGSSVHLVVEAEQLHLLDKACFGSPVRTVEKDKPRFQLSFEEAFYLCYSLKCLKINNDSDDTSSQTDEELWHYMKSKKETFPCFYKAYSHLRMKNWVVRSGAQYGADFVVYRHHPARVHSEYGVLVLSDEEDKDLNGRLRVWSDVHCTTRLLGGVAKILLVLYVNRNGGSNESPLCLANYTVEERTITRWNPEQCREKMVVHANSDNGTG*

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