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Report for Sequence Feature Glyma04g36260

Feature Type:gene_model
Chromosome:Gm04
Start:42819644
stop:42824277
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g36260
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G48260AT Annotation by Michelle Graham. TAIR10: with no lysine (K) kinase 3 | chr3:17873012-17875220 REVERSE LENGTH=516 SoyBaseE_val: 0ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG0584 KOG Serine/threonine protein kinase JGI ISS
PTHR13902Panther SERINE/THREONINE-PROTEIN KINASE WNK (WITH NO LYSINE)-RELATED JGI ISS
PTHR13902:SF34Panther PROBABLE SERINE/THREONINE-PROTEIN KINASE WNK2 JGI ISS
PF00069PFAM Protein kinase domain JGI ISS
UniRef100_C0M0P4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C0M0P4_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q84RS1UniRef Annotation by Michelle Graham. Most informative UniRef hit: ZIK1 protein n=1 Tax=Medicago sativa RepID=Q84RS1_MEDSA SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g36260
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g36260
ParalogEvidenceComments
Glyma06g18630 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g36260 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g188800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g36260
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g36260
>Glyma04g36260.1   sequence type=CDS   gene model=Glyma04g36260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGCCGGATTCCTCCGAGCTAGACCTCGACGATCCTGACATCGAGTTTGTTGAGGTTGATCCCACGGGTCGCTATGGTCGGTACAAGGAAGTTTTAGGGAAAGGGGCTTTCAAGAAAGTATATCGAGCGTTTGATGAGTTGGAAGGGATTGAAGTGGCGTGGAATCAGGTTAAGGTGGCGGATCTGTTGCGTAACTCTGAAGATTTGGAGCGACTTTATTCAGAAGTTCATTTGCTCAAGACTTTGAAGCATAAGAATATAATTAAGTTTTACAATTCATGGGTTGACACCAAGAATGAGAACATCAACTTCATTACTGAAATTTTCACCTCTGGAACGTTGCGCCAATACCGGAAGAAACATAAGCACGTTGATTTGAGAGCTGTGAAGAAATGGTCTAGGCAGATTTTGGAAGGCCTTTTATATCTTCACAGTCACAATCCACCGGTTATTCACCGAGACCTTAAGTGCGATAACATTTTTGTCAATGGGAATCAAGGGGAGGTGAAAATTGGTGATTTAGGATTGGCGGCTATCCTTCAACAGGCCAATTCAGCTCACAGTGTCATAGGTACCCCTGAGTTCATGGCCCCAGAACTTTATGAAGAGGAATACAATGAGCTTGTTGACATCTATGCTTTTGGCATGTGCTTGCTAGAGTTGGTAACTGTTGAGTACCCATATATTGAATGTACCAATGCTGCTCAAATATACAAGAAAGTGACATCTGGAATAAAGCCAGCGTCATTGGCAAAGGTGGCGGATCTTGAAGTTAAAGCATTTATTGAAAAGTGTATTGCTGATGTATCGGAACGGTTGTCTGCAAAAGACCTCCTGATGGATCCCTTCCTTCAGTCAGATAATGATAATGATAGTGTAGGTCAATCTTCAAGATCTCAAACCCATCATTCAGGAAATAGTTCTCATATAGCTGTTGAGCCAAGTAGGGAATTCACGGTGGAAGGTCAGAGGAGAGATAATCATACAATATTTTTAAAATTGCGAATTGCAGATTCCTCAGGTAATATTCGCAATATCCACTTTCCTTTTGATATTGAAGCAGACACATCAATCTCTGTTGCTGGTGAAATGGTTGAGGAGTTGGAACTCACTGATCAAGATGTTACAACTATTGCTAGGATGATTGATTCTGAAATTCGATATCACATTCCTAGTTGGAATTTCAGTGAAACTCCTCTTGACATTAACCATCAAGATTCAAGCTGTACCTCTGAAACTAGGCCAGAGACCTCTCCTATGAAAAATGATTCCATTGCTTCTCCTGGCAGTCTTGCATTAGAAATATTACCTTCAGGTCGTAGGTACTGGTCAGATTCACCAAGGGGAGTTGGAGGAAACTCTCCATCTCAACATTTTACTTCAATCTTGTCTAATGAAACAGGTGTGAATGCTGAGGAAGGCAACCTGATTACAAATGGTGATATTTCAGCTAATGATTGTGTTGATGGTACTGCTGAGCGGGAATGTGATGAGATTGCTGATTCCCCTTCCAGTGAGATAAGTATTACATCGGGAGCAACTAGTGAAAAATCTTCTCAGAAAGAAATATCTCGAAGTCTAAAAGATTCTGAAACGGAATACATCAATCAAATAACAACTAAATTGGAGAATTTGTTGGTTAAACAAAGAGAGGAGTTAGATGAACTAAAGAGGAAGCACAAATTAGCTGTCTCAGATCTTTTGATGGAAATTCCTCCAGAAATGTGCCAGAAGGTCCTAAACGTATGCAACCTGCAGATGCCTGACGGTGAAATGGCGATGCTTGTCCTTCATTAA
Predicted protein sequences of Glyma04g36260
>Glyma04g36260.1   sequence type=predicted peptide   gene model=Glyma04g36260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPPDSSELDLDDPDIEFVEVDPTGRYGRYKEVLGKGAFKKVYRAFDELEGIEVAWNQVKVADLLRNSEDLERLYSEVHLLKTLKHKNIIKFYNSWVDTKNENINFITEIFTSGTLRQYRKKHKHVDLRAVKKWSRQILEGLLYLHSHNPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILQQANSAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLELVTVEYPYIECTNAAQIYKKVTSGIKPASLAKVADLEVKAFIEKCIADVSERLSAKDLLMDPFLQSDNDNDSVGQSSRSQTHHSGNSSHIAVEPSREFTVEGQRRDNHTIFLKLRIADSSGNIRNIHFPFDIEADTSISVAGEMVEELELTDQDVTTIARMIDSEIRYHIPSWNFSETPLDINHQDSSCTSETRPETSPMKNDSIASPGSLALEILPSGRRYWSDSPRGVGGNSPSQHFTSILSNETGVNAEEGNLITNGDISANDCVDGTAERECDEIADSPSSEISITSGATSEKSSQKEISRSLKDSETEYINQITTKLENLLVKQREELDELKRKHKLAVSDLLMEIPPEMCQKVLNVCNLQMPDGEMAMLVLH*






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