SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G49160 | AT | Annotation by Michelle Graham. TAIR10: methyltransferase 1 | chr5:19932501-19938186 FORWARD LENGTH=1534 | SoyBase | E_val: 0 | ISS |
| GO:0006260 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA replication | SoyBase | N/A | ISS |
| GO:0006261 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication | SoyBase | N/A | ISS |
| GO:0006306 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA methylation | SoyBase | N/A | ISS |
| GO:0006333 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin assembly or disassembly | SoyBase | N/A | ISS |
| GO:0006342 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing | SoyBase | N/A | ISS |
| GO:0006349 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of gene expression by genetic imprinting | SoyBase | N/A | ISS |
| GO:0008283 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell proliferation | SoyBase | N/A | ISS |
| GO:0009294 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA mediated transformation | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0009910 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of flower development | SoyBase | N/A | ISS |
| GO:0010069 | GO-bp | Annotation by Michelle Graham. GO Biological Process: zygote asymmetric cytokinesis in embryo sac | SoyBase | N/A | ISS |
| GO:0010216 | GO-bp | Annotation by Michelle Graham. GO Biological Process: maintenance of DNA methylation | SoyBase | N/A | ISS |
| GO:0010424 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA methylation on cytosine within a CG sequence | SoyBase | N/A | ISS |
| GO:0016458 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gene silencing | SoyBase | N/A | ISS |
| GO:0034968 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone lysine methylation | SoyBase | N/A | ISS |
| GO:0051567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation | SoyBase | N/A | ISS |
| GO:0090116 | GO-bp | Annotation by Michelle Graham. GO Biological Process: C-5 methylation of cytosine | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0008168 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity | SoyBase | N/A | ISS |
| PTHR10629 | Panther | MODIFICATION METHYLASE | JGI | ISS | |
| PTHR10629:SF10 | Panther | DNA (CYTOSINE-5)-METHYLTRANSFERASE 1 | JGI | ISS | |
| PF00145 | PFAM | C-5 cytosine-specific DNA methylase | JGI | ISS | |
| PF01426 | PFAM | BAH domain | JGI | ISS | |
| PF12047 | PFAM | Cytosine specific DNA methyltransferase replication foci domain | JGI | ISS | |
| UniRef100_I1JXB2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Cytosine-specific methyltransferase n=1 Tax=Glycine max RepID=I1JXB2_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JXB2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cytosine-specific methyltransferase n=1 Tax=Glycine max RepID=I1JXB2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma04g36150 not represented in the dataset |
Glyma04g36150 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g18790 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g187600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g36150.1 sequence type=CDS gene model=Glyma04g36150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTTCAGCTTCTCTTCTAAATCCTTCTCAACCAGGCGTTAAGAAGAATGACAAGAGCAAACAGAAATCGGTCGTTTCCAAAACTGAAGAGGAAGTTATGTTTAAAGATAAACAAAAGAAACGGAGTTTGTCGGAGAGCAGTGAGCAGACTGCTGCTATGCGCAAAATGCCAAAACGTGCTGCGGCATGTAAAAATTTGAAGGAGAAATCCTTTTTGATATATGAGAAGTCCTGCCTCATTGAAACAGAGAAGGATCATATTGTAGAAGAAGAAAGTCTGGCTGTCCGCATGACAGCTGGACAGGATAATGGTTGTCCAAATAGGCGCATTACAGAGTTTATCCTTCATGATGAAACTGGTAAATCCCAGCCACTTGAGGTGCTGGAGGTTGATGATTTGTTTATCACTGGACTTGTATTGCCACTTGAAGCCAGCTCTGGCAAGAAAAAAGAGAAAGGTGTTAAGTGTGAAGGCTTTGGTCGAATTGAATCATGGGATATATCTGGTTATGAAGATGGCTCTCCAGTGATATGGCTTTCTACTGAAGTTGCTGATTATGATTGCCAGAAACCTGCTGCTAGTTACAAAAAAGTTTACGATCTTTTCCTTGAAAAGGCCCGTGCATGTGTAGAAGTATACAAGAAACTTGCAAAGTCCTCTGGTGGTGACCCTGATATAAGTCTTGATGAGTTACTTGCTGGCATGGTGCGGTCTATGAGTGGTAGCAAATGCTTTTCTGGAGCTGCATCTATAAAGGATTTTGTTATTTCACAGGGTGAGTTCATTTATAAGCAACTTGTTGGTTTGGATATGACATCCAAGGCAAATGACAGGATGTTTGCAGATATTCCTGCTCTTATTGCTCTTAGAGATGAGAGTAAGAAACAAGTACATGCACAGGTAATGCCCTCAAATGGGAGTTTAAGGATTGATTCAGGAGTTGGAGATGAAGAAAACAAGAATCAGATGGATTCAGTAGCTTCTGTAAACGAGGAAGATGAGGATGCAAAGCTGGCACGGCTGTTGCAGGAAGAAGAGTATTGGCAATCTATGAACCAGAAGAAAAACTCCAGATCAGCCTCTGCATCGAACAAATACTATATCAAAATTAATGAAGATGAGATTGCCAATGATTATCCTCTACCTGTTTATTATAAAACCTCCCTTCAAGAAACAGATGAGTTTATAGTTTTTGATAATGACTATGACATATATGACACTCAAGATCTCCCTCGAAGCATGCTGCATAATTGGTCTTTATACAACTCAGATGCAAGATTGGTTTCCTTGGAACTTCTGCCTATGAAACCTTGTTCAGATATCGATGTTGCAATCTTTGGATCAGGTATAATGACTTCAGATGATGGAAGTGGGTTTCATCTTGATACTGAGGCTGGCAAATCTTCTTCCGTTGGTTCTGGAGCACAGGTTGCTGATGGAATGCCAATTTATCTGAGTGCCATAAAGGAATGGATGATTGAATTTGGATCATCTATGATTTTCATATCCATCCGAACTGATTTGGCCTGGTATAGACTTGGCAAACCAGCAAAGCAGTATGCTCCTTGGTATGACACAGTATTGAAAACTGCAAGGCTTGCTATAAGCATTATCACCTTGCTGAAGGAGCAGAGCCGAGTATCACGACTTTCCTTTGGAGATGTCATCAGGAAAGTATCTGAGTTTGATAAGAAAGACGGTTCTTACATTTCTTCTGATCCATTGACTGTTGAGAGATATGTTGTTGTCCATGGACAGATAATTCTGCAACTGTTTGCAGAATTTCCTGATGATAAGATCAGAAAGTCTGCATTTGTGACGGGTCTTACAAACAAAATGGAAGAGCGCCACCATACCAAATGGTTGGTGAAGAAGAAGAAAGTTGTGCCAAGGAGTGAACCAAATTTAAATCCTAGAGCAGCAGTGGGTCCTGTTGTATCCAAGAGGAAAGCTATGCAAGCTACAACGACAAGGCTGATCAATAGAATATGGGGAGAGTATTACTCAAACCACTTGCCAGAGGATGCAAAAGAGGGAATTGCTAGTGAGTTAAAGGATGAGGATGAAGTGGAGGAACAAGAAGAAAATGAAGATGATGACAATGAGGAGACAATACTTTTGGAGGGAACCCCAAAGGCACATTCAGCTTCAAAGCAAACCAAAAAATTTTCTGCTGAAACAGAAATAAGGTGGGAAGGGGAACCTGAAGGGAAGACTAGTTCTGGATATCCTGTTTATAAACAGGCAATTATTCGTGGGGAAGTTATTTCTGTAGGAAGATCTGTGTTGGTGGAGGTTGATGAAACAGATGAATTTCCAGACATATATTATGTTGAATATATGTTTGAATCAAAGATCGGAAGAAAAATGTTCCATGGTAGGATGATGCAGCGTGGTTGTCAGACTGTTCTTGGCAATGCTGCTAATGAGAGAGAGGTGTTTTTGACTAATGAGTGCAGGGATTTGGGACTGCATGATGTCAATCAGACAGTTGTTGTAAATATTCAAAATAGGCCTTGGGGACATCAGCATCGAAAGGATAATATCATTGCAGATAGAGTTGACAGGGCTCAAGCAGAAGAAAGGAAGAAGAAAGGACTACCTACTGAATATTACTGTAAAAGCCTGTACTGGCCTGAAAGAGGTGCTTTCTTTAGCCTTCCACTTGATACTTTGGGGCTAGGGTCTGGTGTTTGCCCATCTTGCAAAATACAGGATGCTGAAAAGGAGAAGGATGTTTTCAAAGTAAATTCCTCCAAGTCTGGTTTCCTATTGAAAGGAACTGAGTATTCTCTTAATGATTATATTTATGTAAGTCCCTTCGAATTTGAGGAAATGATAGAGCAAGGAACTCATAAGAGTGGGAGGAATGTGGGGTTGAAAGCTTATGTTGTGTGCCAAGTGCTTGAGATTGTTGTCAAAAAGGAAATTAAAGAAGCTGAAATAAAGTCTACACAAGTCAAAATCAGGAGGTTCTTCCGACCAGAAGATGTATCAAATGAGAAGGCATACTGTTCTGATATACAAGAGGTGTATTACAGTGATGAAACACATATAATCTCTGTAGAATCCATAGAAGGGAAATGTCAAGTCAGAAAAAAGAATGATATTCCCGAATGCAGTGCCCTTGGCAGAATGTTCCAAAATGTTTTTTTCTGCGAGCTCTTGTATGATCCTGCCACTGGGTCACTGAAGAAGTTGCCGGCTCATGTAAAAGTAAAATATTCAAGTGGACAAACATCTGATGCTGCAGCTAGAAAGAGGAAAGGAAAATGTATAGAGGGAGATGATGTTTTAGAGTCCCCAAATGAAGGAAAAACATTAAATGAAAAACGTTTAGCAACCTTGGACATTTTTGCAGGTTGTGGTGGCTTATCAGAGGGGTTGCAGCAGTCAGGAGTTTCATCAACTAAATGGGCTATTGAGTATGAAGAACCTGCTGGGGATGCATTTAAAGCTAATCATCCTGAGGCATTGGTGTTTATTAACAATTGCAATGTTATTCTTAGGGCTGTAATGGAGAAGTGTGGGGACACAGATGATTGTATCTCAACATCCGAAGCTGCAGAATTGGCTGCAAAGCTTGATGAGAAGGAAATAAGTAGTTTACCAATGCCTGGACAAGTTGATTTCATCAATGGTGGTCCTCCATGTCAGGGTTTCTCTGGGATGAATAGGTTTAACCAGAGCAGTTGGAGTAAAGTCCAGTGTGAGATGATATTGGCATTCTTATCCTTTGCCGATTATTTCCGGCCAAGGTATTTCTTGTTGGAGAATGTGAGGAACTTTGTGTCTTTCAATAAAGGGCAGACATTCCGTTTAACTTTGGCTTCACTTCTTGAGATGGGCTATCAGGTGAGGTTTGGTATCCTTGAGGCTGGAGCATATGGGGTTTCCCAGTCAAGAAAAAGGGCATTCATATGGGCAGCCTCTCCTGAGGATGTGCTTCCTGAATGGCCTGAACCAATGCATGTCTTTTCGGCCCCTGAGTTGAAGATTACATTATCAGAAAATGTCCAGTATGCTGCTGTCCGCAGTACTGCAAATGGTGCTCCATTACGTTCAATAACTGTTCAAGATACTATTGGTGATCTCCCAGCTGTTGGCAATGGAGCCTCAAAAGGAAACATGGAGTATCAAAATGATCCAGTCTCATGGTTTCAAAAGAAGATTCGAGGTGATATGGTTGTCTTGACTGATCATATATCAAAGGAGATGAATGAATTGAACTTGATTCGATGCCAGAAAATTCCCAAGAGACCAGGCGCTGATTGGCGTGACCTTCCAGAAGAAAAGATAAAATTGTCTACTGGACAAGTTGTTGATTTGATACCATGGTGCTTGCCAAACACGGCTAAGCGGCACAATCAGTGGAAGGGACTGTTTGGCAGGTTGGATTGGCAAGGGAATTTCCCAACTTCCATTACTGACCCTCAGCCAATGGGGAAGGTTGGAATGTGCTTCCACCCTGACCAAGATAGGATTCTTACTGTTCGTGAATGTGCTCGGTCTCAAGGCTTCCCAGATAGCTATCAATTTGCTGGCAATATCATACACAAGCACCGGCAGATTGGTAATGCTGTGCCTCCTCCTCTGGCATCTGCATTGGGGAGAAAGCTCAAGGAAGCAGTGGACAGTAAGAGCTCCACTTAG
>Glyma04g36150.1 sequence type=predicted peptide gene model=Glyma04g36150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSASLLNPSQPGVKKNDKSKQKSVVSKTEEEVMFKDKQKKRSLSESSEQTAAMRKMPKRAAACKNLKEKSFLIYEKSCLIETEKDHIVEEESLAVRMTAGQDNGCPNRRITEFILHDETGKSQPLEVLEVDDLFITGLVLPLEASSGKKKEKGVKCEGFGRIESWDISGYEDGSPVIWLSTEVADYDCQKPAASYKKVYDLFLEKARACVEVYKKLAKSSGGDPDISLDELLAGMVRSMSGSKCFSGAASIKDFVISQGEFIYKQLVGLDMTSKANDRMFADIPALIALRDESKKQVHAQVMPSNGSLRIDSGVGDEENKNQMDSVASVNEEDEDAKLARLLQEEEYWQSMNQKKNSRSASASNKYYIKINEDEIANDYPLPVYYKTSLQETDEFIVFDNDYDIYDTQDLPRSMLHNWSLYNSDARLVSLELLPMKPCSDIDVAIFGSGIMTSDDGSGFHLDTEAGKSSSVGSGAQVADGMPIYLSAIKEWMIEFGSSMIFISIRTDLAWYRLGKPAKQYAPWYDTVLKTARLAISIITLLKEQSRVSRLSFGDVIRKVSEFDKKDGSYISSDPLTVERYVVVHGQIILQLFAEFPDDKIRKSAFVTGLTNKMEERHHTKWLVKKKKVVPRSEPNLNPRAAVGPVVSKRKAMQATTTRLINRIWGEYYSNHLPEDAKEGIASELKDEDEVEEQEENEDDDNEETILLEGTPKAHSASKQTKKFSAETEIRWEGEPEGKTSSGYPVYKQAIIRGEVISVGRSVLVEVDETDEFPDIYYVEYMFESKIGRKMFHGRMMQRGCQTVLGNAANEREVFLTNECRDLGLHDVNQTVVVNIQNRPWGHQHRKDNIIADRVDRAQAEERKKKGLPTEYYCKSLYWPERGAFFSLPLDTLGLGSGVCPSCKIQDAEKEKDVFKVNSSKSGFLLKGTEYSLNDYIYVSPFEFEEMIEQGTHKSGRNVGLKAYVVCQVLEIVVKKEIKEAEIKSTQVKIRRFFRPEDVSNEKAYCSDIQEVYYSDETHIISVESIEGKCQVRKKNDIPECSALGRMFQNVFFCELLYDPATGSLKKLPAHVKVKYSSGQTSDAAARKRKGKCIEGDDVLESPNEGKTLNEKRLATLDIFAGCGGLSEGLQQSGVSSTKWAIEYEEPAGDAFKANHPEALVFINNCNVILRAVMEKCGDTDDCISTSEAAELAAKLDEKEISSLPMPGQVDFINGGPPCQGFSGMNRFNQSSWSKVQCEMILAFLSFADYFRPRYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAYGVSQSRKRAFIWAASPEDVLPEWPEPMHVFSAPELKITLSENVQYAAVRSTANGAPLRSITVQDTIGDLPAVGNGASKGNMEYQNDPVSWFQKKIRGDMVVLTDHISKEMNELNLIRCQKIPKRPGADWRDLPEEKIKLSTGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWQGNFPTSITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDSYQFAGNIIHKHRQIGNAVPPPLASALGRKLKEAVDSKSST*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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