Report for Sequence Feature Glyma04g36050
Feature Type: gene_model
Chromosome: Gm04
Start: 42547550
stop: 42559075
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g36050
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G64310 AT
Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:23866053-23867711 FORWARD LENGTH=552
SoyBase E_val: 8.00E-61 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
PTHR24015 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24015:SF30 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF01535 PFAM
PPR repeat
JGI ISS
UniRef100_D7KSS5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KSS5_ARALL
SoyBase E_val: 1.00E-60 ISS
UniRef100_I1JXA6 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JXA6_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma04g36050
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma04g36050
Paralog Evidence Comments
Glyma06g18870 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g36050 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g186800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g36050
Coding sequences of Glyma04g36050
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g36050.1 sequence type=CDS gene model=Glyma04g36050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTTGATTCCGTTTGATTGGCTCCATTCCGAACTCAGCAACATTTGTAAGTCCCTCTTGCGAGCGAAGCAGTTACACGCATTCCTTTTGAAGACCCATCTCTCACAAGACCCCTTTTACGCAACAAAAATTGTTAGGCTGTACGCAGCCAACAACGACATTAAGTCAGCCCATCACGTGTTCGACAAAACTCCCAACCGAAGTGTCTACCTTTGGAATTCCATGATTCGAGCTTTCGCGCAGTCCCAAAGATTTCTCAGTGCAATTTCTCTGTTTAGAACCATGCTTGGGGATGACATAAGTCCTGATGATCACACTTATGCTTGTGTTATACGTGCCTGTGCTGACAACTTTGATTTCGGCATGCTAAGACGTGTTCATGGAGGTGCTGTGGCTGCAGGGTTAGAAATGGATCCTATTTGTTGCAGTGCACTTGTGGCTGCTTATTCAAAACTAGGCCGTGTTCAAGAAGCATGTAGAGTATTCGATGGGATTGCTGAACCGGATTTAGTTTTGTGGAATTCATTGATTTCTGGTTATGGGGGATTTGGTCTGTGGGATGTGGGGATGCAGATGTTTAGCATGATGAGACTCGTTGGGATGAAGCCTGATGGATATACACTGGCTGGGTTGCTTGTGGGTATTGCAGATTCTGGAATGCTGGCGGAGACTGTAGCACAGCAGCTTTTTGAAAGTAGTCCTGCCGATAATGTTTACAGTGTTATGCTTTCTAATATATATGCTGGTGATGGGAGGTGGGATGATGTGAAGAAGTTGAGGGATAAAATGACAGGAGGTCTGAGAAAAATGCCTGGACTAAGCTGGATTGAAGGCAGTTAG
Predicted protein sequences of Glyma04g36050
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g36050.1 sequence type=predicted peptide gene model=Glyma04g36050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MLIPFDWLHSELSNICKSLLRAKQLHAFLLKTHLSQDPFYATKIVRLYAANNDIKSAHHVFDKTPNRSVYLWNSMIRAFAQSQRFLSAISLFRTMLGDDISPDDHTYACVIRACADNFDFGMLRRVHGGAVAAGLEMDPICCSALVAAYSKLGRVQEACRVFDGIAEPDLVLWNSLISGYGGFGLWDVGMQMFSMMRLVGMKPDGYTLAGLLVGIADSGMLAETVAQQLFESSPADNVYSVMLSNIYAGDGRWDDVKKLRDKMTGGLRKMPGLSWIEGS*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
