Glyma04g35955 - SoyBase

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Report for Sequence Feature Glyma04g35955

Feature Type:	gene_model
Chromosome:	Gm04
Start:	42476242
stop:	42477418
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g35955

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
PF03101	PFAM	FAR1 DNA-binding domain	JGI		ISS
UniRef100_G7ZWU5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7ZWU5_MEDTR	SoyBase	E_val: 3.00E-07	ISS
UniRef100_I1M9N7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1M9N7_SOYBN	SoyBase	E_val: 5.00E-13	ISS

Expression Patterns of Glyma04g35955

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g35955 not represented in the dataset	Glyma04g35955 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g35955 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g186100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g35955

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g35955

Limit To All Plant Sequences

>Glyma04g35955.2   sequence type=transcript   gene model=Glyma04g35955   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGAAAGCTCTGAAGAGTAGTATTTTTTGTATTATAAGTCATTGTTGGTGTCTATTTCTGAAAATCGATTTGACGAAGCTGCTTTTTCGTGTAGTAGTTTTATAAGTGTGGAGTATAAGGTTTTTGTCCCCTAATGAGAGTGCTTTACCATTTTTTCACCCTTGGTTGTCAAAGTTGGTTAGAGATTTATGTTGTCTGGATACACCCTTTGTGTTTGATTTTTTATCCTCTGTTTTACCTTACTTCTTCGGTGTACTTTTCCCGGTAGGAAGGTGCAATATTCATTTTTATCAGGTTTTTTTTTTATGACGAATCGGTTGGTCTGAAGTTGCTGGCAAGCACAATTTGTGTTCGTGGAGGAAGGAGAAGTAAGCAGGGGATTCAAAGAATGATATTGAAGAAAACTATGGTGTTGTGGAGGATGATGCACAAAATTTTGATTTTTCAAATGGAGACAATTATTCGGAGGAGGACGGGGACAATGATTTTGAGGATGGTTGTGATGATTTAGAGGATGAGATTGTGTGGGAGAACAAAGATCCGGACAATCTGAATAGTGCTGATGATGTTATAATGATAAATGGAAGAGTGATATATTACAGATAGACATAGGAAATTTGATGCATGATGTTATTGACAAGCTTGATTATGTGGATCTTGAGACTGCATATATGTTCTGCACTTGGTACTCTAGAATTGTTAATTTCTCCATCCAGAAAATTCATGTTCTTAGAAATAGTCTTGGGGAAACTATCCAACGAACTTTTTTGTGTTCCCGAGCAGGTAGAAAAAATTATAGAGGTGCGTCTTCAAGTGGTAGAAAGCGCAAAGCAAGAAATGGCATTAGGTGTGAGCGTTGTTGTAGGTGCATGTGTGATCTAGCTTATTTCTTTCCAAGTTATGTTCATGTGCTGTCTATTCAAAATCACATCGCATAATAGTTGTGTTAATATTTAATCATGAACTTACTTTATGAAAATCATGAAAATGATGTCATTTTTAAAGAGACAACACAGGAACAGCTTAAAAAGAGACAACAGAGA

Coding sequences of Glyma04g35955

Limit To All Plant Sequences

>Glyma04g35955.1   sequence type=CDS   gene model=Glyma04g35955   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATGATGTTATTGACAAGCTTGATTATGTGGATCTTGAGACTGCATATATGTTCTGCACTTGGTACTCTAGAATTGTTAATTTCTCCATCCAGAAAATTCATGTTCTTAGAAATAGTCTTGGGGAAACTATCCAACGAACTTTTTTGTGTTCCCGAGCAGGTAGAAAAAATTATAGAGGTGCGTCTTCAAGTGGTAGAAAGCGCAAAGCAAGAAATGGCATTAGGTGTGAGCGTTGTTGTAGGTGCATGTGTGATCTAGCTTATTTCTTTCCAAGTTATGTTCATGTGCTGTCTATTCAAAATCACATCGCATAA

>Glyma04g35955.2   sequence type=CDS   gene model=Glyma04g35955   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATGATGTTATTGACAAGCTTGATTATGTGGATCTTGAGACTGCATATATGTTCTGCACTTGGTACTCTAGAATTGTTAATTTCTCCATCCAGAAAATTCATGTTCTTAGAAATAGTCTTGGGGAAACTATCCAACGAACTTTTTTGTGTTCCCGAGCAGGTAGAAAAAATTATAGAGGTGCGTCTTCAAGTGGTAGAAAGCGCAAAGCAAGAAATGGCATTAGGTGTGAGCGTTGTTGTAGGTGCATGTGTGATCTAGCTTATTTCTTTCCAAGTTATGTTCATGTGCTGTCTATTCAAAATCACATCGCATAA

Predicted protein sequences of Glyma04g35955

Limit To All Plant Sequences

>Glyma04g35955.1   sequence type=predicted peptide   gene model=Glyma04g35955   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHDVIDKLDYVDLETAYMFCTWYSRIVNFSIQKIHVLRNSLGETIQRTFLCSRAGRKNYRGASSSGRKRKARNGIRCERCCRCMCDLAYFFPSYVHVLSIQNHIA*

>Glyma04g35955.2   sequence type=predicted peptide   gene model=Glyma04g35955   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHDVIDKLDYVDLETAYMFCTWYSRIVNFSIQKIHVLRNSLGETIQRTFLCSRAGRKNYRGASSSGRKRKARNGIRCERCCRCMCDLAYFFPSYVHVLSIQNHIA*

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