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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G63040 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48460.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:25288504-25290326 FORWARD L | SoyBase | E_val: 3.00E-109 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_I1JX95 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JX95_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9FM48 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Emb|CAB81845.1 n=1 Tax=Arabidopsis thaliana RepID=Q9FM48_ARATH | SoyBase | E_val: 2.00E-106 | ISS |
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Glyma04g35890 not represented in the dataset |
Glyma04g35890 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g19040 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g185500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g35890.3 sequence type=transcript gene model=Glyma04g35890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAACGGGTTCAGTTGAATCCTATACAAGTAAGACTCAGACCCAGAAACCTACGGCTGAAGGCAGTGTCACACGTTGTAAGACTCAGACTGTGTTCTGTTCTATTCTGTGTTCCACTTTGGGTTATTCGTTAAATCTTTATTTAATTAAGTTAAGATGGTTCAGTGATTCAACCAACGTGAGACCCTTCTTCTATCCTTCGACGCCACGCACGCTCTTGTTGTCTCCTTCATTCGCAATATTGTTATGGCAAATGCCAAGTTCGGTTCCTCCTTTTCATGTTCAGCGGCTTCTCTTTCTTCTTCTCCTTTCCAACGCACCAGAACTGCCCAGTTGAACTTATCTCAAGGGTTGTTTGTCAACCAACTAACTGGTGCTCAGTTGCAAATGTACACTAAAGACAAATCATGCCAGCTTAAGTTTATTCATGGAATGCCAAACTTAAAAGGAAGGCTACAGAAACAGCATTATGCTCTTTTTGTTGTCTCTGAGGATCAGTCACAATACTGTGAGCTCGAAACAACTGCTTTAGTGCTAGAAAACAGCAATACAGTTGCAGAAGACATCTCTCCTGCAAGCAACTCATATTTTCATTTATCAGGTAGTGATGGAAAACCAGGTTTACTATCATTTTATAACCGTCCATACAGAAGAGATAGTAAGATCCTCTTACCAAATTCAGAGAGAAGTCAAAACAGCATATTGTGGTTTTTGGGCCCTGCAGTCCTCGTTGCGTCCTTCATTTTTCCTTCACTCTATTTACGCAAAGTGCTATCCATCATTTTTGAGGACTCTTTGTTAACTGATTTCCTCATATTATTCTTCACAGAAGCAATTTTCTATTGTGGTGTTGGGGTATTCCTTTATCTACTAGACCATGTAAGAAGACCCTTGCTAGTGGATATCGCTGCAAACAATAGTGATACTCTACCCCCACAATTGGGACAGAGAGTCTCTTCTGTTGCTACCCTGGTGCTTAGTCTTGTAATTCCAATGGTGACTATGGGTTTGGTCTGGCCGTGGACTGGCCCTGCAGCCTCCGCAACTCTTGCTCCATACCTTGTTGGTATAGTTGTCCAATTTGCATTTGAGCAATATGCCAGATATCGAAAGTCTCCTTCATGGTCTGCTATTCCATTAATCTTTCAAGTGTATAGATTGCACCAACTAAATAGAGCAGCACAACTGGTGACAGCTTTATCATTTACTGTTAGAGGAGCTGAAATGACCTCACACAACATGGCTATAAACAGCTCTTTGGGTACCCTTCTAAATGTCCTACAATTCCTTGGTGTGATTTGCATTTGGTCCCTATCCAGCTTCCTCATGAGATTTATCCCTTATGCTTCAACAACTAAGCAGTAAAGAATTTCTTGTAAAGTTTGTTAACCATGTCATCTCACACATCAGAACACCCCCAGTTCATCTTCGTGCAGAATATGTAGATCTACATGGGTTTATTTTTTGGTGGTTTAAAACTGTTAAATCTAATTGGAATTTTGGACACTAATCCTCTGATTCATCTAGAATTAAAAAAAATGGTGGTTTCAAGAATTTGAAACTGAGGATTTTGGATACCGATTAAACAAAGGAATATTTGTAGTTTTACTTGTAAGGCATTTGTTTAAAATGTTATTTGCACGAAATGAAGGGAAAACGTGGCAATTAGACCACTAAATTATATATTCGTATGCATTTGACCTGA
>Glyma04g35890.1 sequence type=CDS gene model=Glyma04g35890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTACACTAAAGACAAATCATGCCAGCTTAAGTTTATTCATGGAATGCCAAACTTAAAAGGAAGGCTACAGAAACAGCATTATGCTCTTTTTGTTGTCTCTGAGGATCAGTCACAATACTGTGAGCTCGAAACAACTGCTTTAGTGCTAGAAAACAGCAATACAGTTGCAGAAGACATCTCTCCTGCAAGCAACTCATATTTTCATTTATCAGGTAGTGATGGAAAACCAGGTTTACTATCATTTTATAACCGTCCATACAGAAGAGATAGTAAGATCCTCTTACCAAATTCAGAGAGAAGTCAAAACAGCATATTGTGGTTTTTGGGCCCTGCAGTCCTCGTTGCGTCCTTCATTTTTCCTTCACTCTATTTACGCAAAGTGCTATCCATCATTTTTGAGGACTCTTTGTTAACTGATTTCCTCATATTATTCTTCACAGAAGCAATTTTCTATTGTGGTGTTGGGGTATTCCTTTATCTACTAGACCATGTAAGAAGACCCTTGCTAGTGGATATCGCTGCAAACAATAGTGATACTCTACCCCCACAATTGGGACAGAGAGTCTCTTCTGTTGCTACCCTGGTGCTTAGTCTTGTAATTCCAATGGTGACTATGGGTTTGGTCTGGCCGTGGACTGGCCCTGCAGCCTCCGCAACTCTTGCTCCATACCTTGTTGGTATAGTTGTCCAATTTGCATTTGAGCAATATGCCAGATATCGAAAGTCTCCTTCATGGTCTGCTATTCCATTAATCTTTCAAGTGTATAGATTGCACCAACTAAATAGAGCAGCACAACTGGTGACAGCTTTATCATTTACTGTTAGAGGAGCTGAAATGACCTCACACAACATGGCTATAAACAGCTCTTTGGGTACCCTTCTAAATGTCCTACAATTCCTTGGTGTGATTTGCATTTGGTCCCTATCCAGCTTCCTCATGAGATTTATCCCTTATGCTTCAACAACTAAGCAGTAA >Glyma04g35890.3 sequence type=CDS gene model=Glyma04g35890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAAATGCCAAGTTCGGTTCCTCCTTTTCATGTTCAGCGGCTTCTCTTTCTTCTTCTCCTTTCCAACGCACCAGAACTGCCCAGTTGAACTTATCTCAAGGGTTGTTTGTCAACCAACTAACTGGTGCTCAGTTGCAAATGTACACTAAAGACAAATCATGCCAGCTTAAGTTTATTCATGGAATGCCAAACTTAAAAGGAAGGCTACAGAAACAGCATTATGCTCTTTTTGTTGTCTCTGAGGATCAGTCACAATACTGTGAGCTCGAAACAACTGCTTTAGTGCTAGAAAACAGCAATACAGTTGCAGAAGACATCTCTCCTGCAAGCAACTCATATTTTCATTTATCAGGTAGTGATGGAAAACCAGGTTTACTATCATTTTATAACCGTCCATACAGAAGAGATAGTAAGATCCTCTTACCAAATTCAGAGAGAAGTCAAAACAGCATATTGTGGTTTTTGGGCCCTGCAGTCCTCGTTGCGTCCTTCATTTTTCCTTCACTCTATTTACGCAAAGTGCTATCCATCATTTTTGAGGACTCTTTGTTAACTGATTTCCTCATATTATTCTTCACAGAAGCAATTTTCTATTGTGGTGTTGGGGTATTCCTTTATCTACTAGACCATGTAAGAAGACCCTTGCTAGTGGATATCGCTGCAAACAATAGTGATACTCTACCCCCACAATTGGGACAGAGAGTCTCTTCTGTTGCTACCCTGGTGCTTAGTCTTGTAATTCCAATGGTGACTATGGGTTTGGTCTGGCCGTGGACTGGCCCTGCAGCCTCCGCAACTCTTGCTCCATACCTTGTTGGTATAGTTGTCCAATTTGCATTTGAGCAATATGCCAGATATCGAAAGTCTCCTTCATGGTCTGCTATTCCATTAATCTTTCAAGTGTATAGATTGCACCAACTAAATAGAGCAGCACAACTGGTGACAGCTTTATCATTTACTGTTAGAGGAGCTGAAATGACCTCACACAACATGGCTATAAACAGCTCTTTGGGTACCCTTCTAAATGTCCTACAATTCCTTGGTGTGATTTGCATTTGGTCCCTATCCAGCTTCCTCATGAGATTTATCCCTTATGCTTCAACAACTAAGCAGTAA
>Glyma04g35890.1 sequence type=predicted peptide gene model=Glyma04g35890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MYTKDKSCQLKFIHGMPNLKGRLQKQHYALFVVSEDQSQYCELETTALVLENSNTVAEDISPASNSYFHLSGSDGKPGLLSFYNRPYRRDSKILLPNSERSQNSILWFLGPAVLVASFIFPSLYLRKVLSIIFEDSLLTDFLILFFTEAIFYCGVGVFLYLLDHVRRPLLVDIAANNSDTLPPQLGQRVSSVATLVLSLVIPMVTMGLVWPWTGPAASATLAPYLVGIVVQFAFEQYARYRKSPSWSAIPLIFQVYRLHQLNRAAQLVTALSFTVRGAEMTSHNMAINSSLGTLLNVLQFLGVICIWSLSSFLMRFIPYASTTKQ* >Glyma04g35890.3 sequence type=predicted peptide gene model=Glyma04g35890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MANAKFGSSFSCSAASLSSSPFQRTRTAQLNLSQGLFVNQLTGAQLQMYTKDKSCQLKFIHGMPNLKGRLQKQHYALFVVSEDQSQYCELETTALVLENSNTVAEDISPASNSYFHLSGSDGKPGLLSFYNRPYRRDSKILLPNSERSQNSILWFLGPAVLVASFIFPSLYLRKVLSIIFEDSLLTDFLILFFTEAIFYCGVGVFLYLLDHVRRPLLVDIAANNSDTLPPQLGQRVSSVATLVLSLVIPMVTMGLVWPWTGPAASATLAPYLVGIVVQFAFEQYARYRKSPSWSAIPLIFQVYRLHQLNRAAQLVTALSFTVRGAEMTSHNMAINSSLGTLLNVLQFLGVICIWSLSSFLMRFIPYASTTKQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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