SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G19100 | AT | Annotation by Michelle Graham. TAIR10: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein | chr1:6595560-6601159 FORWARD LENGTH=663 | SoyBase | E_val: 0 | ISS |
| GO:0007062 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion | SoyBase | N/A | ISS |
| GO:0009855 | GO-bp | Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry | SoyBase | N/A | ISS |
| GO:0009887 | GO-bp | Annotation by Michelle Graham. GO Biological Process: organ morphogenesis | SoyBase | N/A | ISS |
| GO:0010051 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylem and phloem pattern formation | SoyBase | N/A | ISS |
| GO:0031048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA | SoyBase | N/A | ISS |
| GO:0031935 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of chromatin silencing | SoyBase | N/A | ISS |
| GO:0045132 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation | SoyBase | N/A | ISS |
| GO:0048439 | GO-bp | Annotation by Michelle Graham. GO Biological Process: flower morphogenesis | SoyBase | N/A | ISS |
| GO:0048519 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of biological process | SoyBase | N/A | ISS |
| GO:0080188 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA-directed DNA methylation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0016887 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATPase activity | SoyBase | N/A | ISS |
| KOG1845 | KOG | MORC family ATPases | JGI | ISS | |
| PTHR23336 | Panther | ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. | JGI | ISS | |
| PTHR23336:SF8 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF02518 | PFAM | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | JGI | ISS | |
| UniRef100_B9RAZ5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9RAZ5_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JX93 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JX93_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma04g35870 not represented in the dataset |
Glyma04g35870 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g185300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g35870.1 sequence type=CDS gene model=Glyma04g35870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGCCCTACAGAAGTTGTGTATTTATCTAGTGATGATGAAAGTGAAAAGGAAGTTGCTTTCAAAGCTGTTAAGTTGGAGGAAGATTTTGTTTTGGATGCAAAACAATATAATGAGACTAACAAAGGTCAACTAGCCAAGCACAAGAGATCTCAAAGTCATACTACTGGACAAGATTCTGAAGAAAATTTAAGTTCTAATGGTCCAAGTACAGGTCATAGTAACTCCAGTGTGTTGGAGCAGGGACCGTCGCCTGTTGATGACACAGGCATTTCTTATGCATCATCCATTGGTGTAGCACCCCTGTGTAGGCAGTTTTGGAAAGCTGGAAACTATGATGATGGACTTGGTTCTAAAGTCACCGTCCAAAATGCCAAAAATTATCTACATGTGCACCCCATGTTCCTTCACTCAAATGCAACTTCGCATAAGTGGGCATTTGGTGCCATAGCAGAGCTTCTTGATAATGCAGTTGATGAGATCCAAAATGGGGCTACCTTTGTCATTGTAGATAAAACTTCAAATCCAAGGGATGGAAATCCAGCATTGTTGATTCAAGATGATGGTGGTGGAATGGATCCGGATGCAATGCGTCGTTGCATGAGTTTTGGATTTTCAGATAAGAAGTCACAGTTTGCTATTGGACGGTATGGAAATGGCTTCAAGACCAGTAGTATGAGGCTTGGTGCAGATGTCATAGTCTTCAGTTGCCATCTAAATAATAGGATTTTGACTCAAAGCATTGGACTTCTGTCATATACATATTTGATAAAAACACAGCTTGACAGAATAGTAGTACCCATGGTGAATTATGAGTTTGATACATCAACTGGATCATTGAAAATATTAAATGGCAATGAGCATTTTGTGTCTAATTTATCCTTGCTGTTGCGTTGGTCACCATATTCATCAGAAGCAGATCTTCTGAAACAATTTGATGACATTGGATCTCATGGTACTAAAGTTATTATCTATAATTTGTGGTGCAATGATGATGCAAATTTGGAGCTAGACTTTGATACAGATCCTACGGATATTCGTATTGCTGGGGATGTCAAGCAGATTGATACACTTAAAGCCTGGAAAAGTGTAAATGAGGAGCACATTGCTAATCGGCTTCGTTACTCTTTACATGTATATATGTCCATATTATACTTGAAGATACCAGAAAGTTTTCAAATGATATTGCGAGGGCAAGTTGTGAAGCCACACAACATTGCTGATGATCTTAAGTTCCCTCAATTTGTTAAATATGCACCAGTAATTGGTGGATCCGTAAAGGGAACAGCTTTGACAGTCACAACAATTGGATTTCTTAAGGAAGCTCCTCAAGTCAATATCCATGGTTTCAATGTATATCACAAAAATCGGCTTATACTGCCATTTTGGCAGGTTGTAAGCTATTTGGACAGTAGGGGAAGAGGAGTTGTTGGAATCCTGCAAGCAGATTTTATTGAGCCAACTCATAACAAACAAGATTTTGAGAGAACTTCCCTGTTTCAAAAGCTTGAAGGGCGATTGAAGGAGATGACATGGGAATACTGGGACACACATTGTACATTGTTTGGGTATAAGGATAAGGACAAGAAGAAGCTTCCACCGAGGGTTACGTCAATGCAGAAACCACTTGCTATAGAAAAACCGGTCATGCTGAACAGAAGTTGCTCCCCTGTTGTCAATACAAAAATAGAATATGGGAATTCTGAACAGTGTTCCACAAAACTGCAAATAAGATCCGAACAAGGTTCTCATAATAAGAGGAAGACACATGAACTGGTAGACCTTCAGAATACGGAAAAACATGCAAGGACAGAGAATGTAACCTGTGTTGGTTTCAGTCAGAATAAACAGATCATTGCTACTCCAGCTGACCAGGTGTTCGACCGAAAGACTATGCACTTGGTGCAACAAAACAAGAAACTGCATGCAAAATGTTTAGAATTTGAAAAGACAGGAGAAGAACTTAATCTCAAGGTGACGATGCTTAAAAGTGAAATACAAGAAGCTCAAGATGAGTATAAACGGCTTTTGGCTGAAGTGAAGTCCCTAGACCTGAAAGAAGAGTAG
>Glyma04g35870.1 sequence type=predicted peptide gene model=Glyma04g35870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGPTEVVYLSSDDESEKEVAFKAVKLEEDFVLDAKQYNETNKGQLAKHKRSQSHTTGQDSEENLSSNGPSTGHSNSSVLEQGPSPVDDTGISYASSIGVAPLCRQFWKAGNYDDGLGSKVTVQNAKNYLHVHPMFLHSNATSHKWAFGAIAELLDNAVDEIQNGATFVIVDKTSNPRDGNPALLIQDDGGGMDPDAMRRCMSFGFSDKKSQFAIGRYGNGFKTSSMRLGADVIVFSCHLNNRILTQSIGLLSYTYLIKTQLDRIVVPMVNYEFDTSTGSLKILNGNEHFVSNLSLLLRWSPYSSEADLLKQFDDIGSHGTKVIIYNLWCNDDANLELDFDTDPTDIRIAGDVKQIDTLKAWKSVNEEHIANRLRYSLHVYMSILYLKIPESFQMILRGQVVKPHNIADDLKFPQFVKYAPVIGGSVKGTALTVTTIGFLKEAPQVNIHGFNVYHKNRLILPFWQVVSYLDSRGRGVVGILQADFIEPTHNKQDFERTSLFQKLEGRLKEMTWEYWDTHCTLFGYKDKDKKKLPPRVTSMQKPLAIEKPVMLNRSCSPVVNTKIEYGNSEQCSTKLQIRSEQGSHNKRKTHELVDLQNTEKHARTENVTCVGFSQNKQIIATPADQVFDRKTMHLVQQNKKLHAKCLEFEKTGEELNLKVTMLKSEIQEAQDEYKRLLAEVKSLDLKEE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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