Glyma04g35710 - SoyBase

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Report for Sequence Feature Glyma04g35710

Feature Type:	gene_model
Chromosome:	Gm04
Start:	42145183
stop:	42151199
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g35710

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G62270	AT	Annotation by Michelle Graham. TAIR10: HCO3- transporter family \| chr3:23042528-23045633 REVERSE LENGTH=703	SoyBase	E_val: 0	ISS
GO:0006820	GO-bp	Annotation by Michelle Graham. GO Biological Process: anion transport	SoyBase	N/A	ISS
GO:0006826	GO-bp	Annotation by Michelle Graham. GO Biological Process: iron ion transport	SoyBase	N/A	ISS
GO:0010106	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion starvation	SoyBase	N/A	ISS
GO:0010167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to nitrate	SoyBase	N/A	ISS
GO:0015706	GO-bp	Annotation by Michelle Graham. GO Biological Process: nitrate transport	SoyBase	N/A	ISS
GO:0052541	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall cellulose metabolic process	SoyBase	N/A	ISS
GO:0052546	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall pectin metabolic process	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0005452	GO-mf	Annotation by Michelle Graham. GO Molecular Function: inorganic anion exchanger activity	SoyBase	N/A	ISS
GO:0015301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: anion:anion antiporter activity	SoyBase	N/A	ISS
PTHR11453	Panther	ANION EXCHANGE PROTEIN	JGI		ISS
PTHR11453:SF6	Panther	ANION EXCHANGE PROTEIN-RELATED	JGI		ISS
PF00955	PFAM	HCO3- transporter family	JGI		ISS
UniRef100_G7J5E8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Boron transporter n=1 Tax=Medicago truncatula RepID=G7J5E8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A807	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A807 related cluster n=1 Tax=unknown RepID=UPI000233A807	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g35710

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g35710

Paralog	Evidence	Comments
Glyma06g19290	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g35710 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g184000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g35710

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g35710

Limit To All Plant Sequences

>Glyma04g35710.3   sequence type=transcript   gene model=Glyma04g35710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTATATATATATATATATATAAATAAACTATTGGTCTCAGCATAACAACACTGTCACACAAAAATCCTCTCGCAGCAGTATTTGCAATTGTCTTGTTTTCCTACCCTCGAAATTTGTCAGTTCTTCTGTTTTGCCTTGTGTGTTTCTTTCAATCTTGTCTAAGATAGTGTCCACTGTTTGTGTATCTCAGTGATTAAATGTAACTGCAATCTCTTCTTCTTCTTTGTTGGTTTACTTCAGTCTGTTTCTGTTCCTTTTTCAAGGTTCCTTGCAGAAAAATGTAATTTTGGTTTCAGATTAAGATACCCTTTTTGCTTTTTAGTCAATGCCCAAATCCTTAAAAGTCCTCTGAACATTCCCATCATGTTCTCGGTCATGGAATCTCGTTAATCTATATGCCAGATTCCCATCTGGGTCCAACTACCTCATCTTTGACCTTTCTGTTCTGTTGATGAACATTCTTCTCAGTGCTTCTAAATTGTAGCAAATGCAGATTGTGATGATGGGTTTCCGTTAGTTGTGTTGGATTGCCCTCCATAGCTATACATTCAAAACTGAATTTTGATTAACCTTAGTTTTGAGTGTATTAACTGTACCATGTAACTGAATGCTGCCAATCTGCTTCTACTGTATTGTTTCTGGGAGTTAGTTTGGCCTCTATAGATAGCATATGGAGGGTAAAGTAGAGAAAGGGGTGGTTTTGGATCTAGGATTTGTCATGAGTGAGCGCTAGCCTTCATTTTCAGCTTTGTGGAGAGTGTCTACTCTTCTCTAAGTGTTGACTTTAGCATAAATTCTGTAATATTCTTTGAGTTTCTCTTGAATATGTAAACCAAGTTCTTTTTGTTCAATTATTGACTTCTTTTGTTACTCATAACAATACACCCAAAAGTTGTTCATAAATTCTTTGAAATGTAAATTCTTCCACTGGATTCATTTATTCAATTTTCTTCATTAAGGGCCTGATGTACTAAAAAATCAAAAAATGAGTATACCTTGTTCCACCTTTCTTGTTTTGGATGATATGTAGGATTCTGGTATCCCTGCCCGGAGTTTTATAGTGATATTTTCCTATATGCAGCTTTGATCACTGTGTGAACCTCTAGAGCTCCTTTCAAGTACATGTTTTTTGTTTCTTGTTCCTTTCTGTTACCCTTTAGATCAAGATTTAAGATCAATATCAGTTCCTTTGTATTGCAAGACTTTCATGGAAGAAACATTTGTTCCCTTACGTGGCATTAAGAACGACCTCAAAGCAAGAATTCCGTGCTATAGACAAGATTGGACTAGTGGATTCCAAGCTGGAATCAGATGGAAGTCTCACTGCTGTGCAGACTCTTGCATCAACCGCACTATGCGGTATTATCCACTCAATCATTGGAGGGCAGCCTCTCCTCATACTAGGTGTAGCTGAGCCAACAGTCCTGATGTATACATTCATGTATAACTTTGCTAAGGATCGCCAAGATTTGGGACACAAACTATTCCTACCTTGGACTGGATGGGTCTGTGTTTGGACTGCCCTGTTGCTGTTCTTGCTGGCCGTTCTTGGTGCATGCTCAATAATCAATAGATTCACACGCCTTGCTGGTGAATTATTTGGTCTGCTAATTGCAATGCTCTTTATGCAGCAGGCTATAAAGGGTCTTGTGGAAGAGTTTGGTGCACCCAAGAACCAGAGAGAAGGTACCAATCAGATTGCACTTCAATCATCTTGGCTATTTGGCAATGGAATGTTTGCTTTAGTTTTGTCATTTGGTCTTCTTTTTACTGGTCTTCAAAGCCGCAAGGCTAGATCCTGGCGTTATGGCTCAGGTTGGCTACGAGGATTCATAGCTGATTATGGAGTCCCACTAATGGTCCTCATATGGACTGCCGTGTCTTACATACCAGTCAATGAGGTTCCAAGGGGAATCCCTAGGCGACTTTTCAGTCCAAACCCATGGTCTCCTGGTGCATACTCAAATTGGACTGTTGTCAAGGAAATGTTGAATGTGCCCCCCTTATATATTGTTGGAGCATTTATACCAGCAACTATGATTGCTGTGCTTTACTACTTTGATCACAGTGTTGCATCACAACTTGCTCAGCAAAAGGAGTTCAATCTAAGAAAACCCTCATCTTATCATTATGACTTGCTGCTCTTAGGATTTTTGACCATATTGTGTGGACTTATTGGAATCCCTCCTTCCAATGGTGTGATTCCACAATCTCCAATGCATACGAAGAGCTTGGCTACTCTAAAACATCAGCTTTTACGGAATAAGCTTGTATCTACTGCACGAAAAAGCATGCGGAGAAATGTTAATTTGAGCCAGTTATACCAAAATATGAAAGAAGCATATGATGAAATTCAGACTCCATTGGTTCCCCAAATGCCAACTACATTGGGGCTGAAAGAACTGAAGGAATCTACTATTGAACTGGCTTCAAGTCAAGGATATATTGATGCCCCTGTTGATGAGGTTGTCTTTGATGTGAATAAGGATGTGGATGACCTTTTGCCAGTTGAAGTTAAAGAACAGCGCCTCAGCAATCTACTGCAGGCATTGATGGTTGCGGCTTGTGTTGCTGCTATGCCCGTTTTGAAGAAGATACCAACTTCAGTGCTTTGGGGCTACTTTGCCTTCATGGCCATTGAAAGCTTGCCAGGAAATCAATTTTGGGAGAGAATATTGTATCTTTTCACTGCTCCAAGTCGAAGATACATACTGTTGGAGGAATACCATGCCACCTTTGTTGAGACCGTGCCCTTCAAAACAATTGCCATGTTTACTGTGTTCCAGACAGTGTACTTGCTTCTCTGCTTCGGCATAACCTGGATACCAATTGCTGGGGTTCTTTTCCCATTGTTAATCATGCTTCTTGTCCCTGTACGGCAATATTTTCTTCCAAAGTTTTTCAAAGGTGCCCATCTTCAAGAGCTGGATGCAGCAGCATACGAGGAAGCACCTGCTATTGCTTTCAACATGTCCTTTGAAGGTCCAAGTAGCCAGGCACCAACAATCAATATCAGCGGTGGGGAAATTCTTGATGAAGTTATTACGAGGAGTCGTGGTGAGTTTCGCCGCACTCAAAGCCCCAAAACAACAAGTTCAACTCCAACTTCAACAGGAGATATAAGACCAGCCAATAGCCCTCAGTTAGCAAGGAGGATTCCCAGCCCTCGAGTAACTGAATTGAGAGGGGAAAGCAGCCTCAGACCAACCGGGAAGGAGATCAAGTTAATGCAAACACCTAGTCCACGGTCACCAGGTCTTGGAAAAGTTACCAAAGATTTGCCTTGAACCTATTGTTAGAATTGAACTAAGTGGTGCTCTAGAGGTCATGAACTTGGTTTTATGATAAATTGTTGTATTCTCAATGTCTCCCTTTTCTTTATACCAGTGTTTGTTGTTTGATTGCAACATTCTTAGCAATATAAAATGGGCAGGGATACTATTGGATGTTGTAGTAATGTTGCTGTCTTGAATTTTGGTTTGATGTGGTTCAGGTGCTCTTATAAAATCAATAAAGCGGTTTGCAAACTGGAAAAAGATCCTCTAAAGTAATTTTTTTACTAAAAGAAATTAAGTATGGA

Coding sequences of Glyma04g35710

Limit To All Plant Sequences

>Glyma04g35710.2   sequence type=CDS   gene model=Glyma04g35710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAAACATTTGTTCCCTTACGTGGCATTAAGAACGACCTCAAAGCAAGAATTCCGTGCTATAGACAAGATTGGACTAGTGGATTCCAAGCTGGAATCAGGATCCTTGCCCCAACTACATACATATTTTTTGCTTCTGCAATTCCTGTTATTTCTTTTGGGGAGCAACTGGAGAGAAATACTGATGGAAGTCTCACTGCTGTGCAGACTCTTGCATCAACCGCACTATGCGGTATTATCCACTCAATCATTGGAGGGCAGCCTCTCCTCATACTAGGTGTAGCTGAGCCAACAGTCCTGATGTATACATTCATGTATAACTTTGCTAAGGATCGCCAAGATTTGGGACACAAACTATTCCTACCTTGGACTGGATGGGTCTGTGTTTGGACTGCCCTGTTGCTGTTCTTGCTGGCCGTTCTTGGTGCATGCTCAATAATCAATAGATTCACACGCCTTGCTGGTGAATTATTTGGTCTGCTAATTGCAATGCTCTTTATGCAGCAGGCTATAAAGGGTCTTGTGGAAGAGTTTGGTGCACCCAAGAACCAGAGAGAAGGTACCAATCAGATTGCACTTCAATCATCTTGGCTATTTGGCAATGGAATGTTTGCTTTAGTTTTGTCATTTGGTCTTCTTTTTACTGGTCTTCAAAGCCGCAAGGCTAGATCCTGGCGTTATGGCTCAGGTTGGCTACGAGGATTCATAGCTGATTATGGAGTCCCACTAATGGTCCTCATATGGACTGCCGTGTCTTACATACCAGTCAATGAGGTTCCAAGGGGAATCCCTAGGCGACTTTTCAGTCCAAACCCATGGTCTCCTGGTGCATACTCAAATTGGACTGTTGTCAAGGAAATGTTGAATGTGCCCCCCTTATATATTGTTGGAGCATTTATACCAGCAACTATGATTGCTGTGCTTTACTACTTTGATCACAGTGTTGCATCACAACTTGCTCAGCAAAAGGAGTTCAATCTAAGAAAACCCTCATCTTATCATTATGACTTGCTGCTCTTAGGATTTTTGACCATATTGTGTGGACTTATTGGAATCCCTCCTTCCAATGGTGTGATTCCACAATCTCCAATGCATACGAAGAGCTTGGCTACTCTAAAACATCAGCTTTTACGGAATAAGCTTGTATCTACTGCACGAAAAAGCATGCGGAGAAATGTTAATTTGAGCCAGTTATACCAAAATATGAAAGAAGCATATGATGAAATTCAGACTCCATTGGTTCCCCAAATGCCAACTACATTGGGGCTGAAAGAACTGAAGGAATCTACTATTGAACTGGCTTCAAGTCAAGGATATATTGATGCCCCTGTTGATGAGGTTGTCTTTGATGTGAATAAGGATGTGGATGACCTTTTGCCAGTTGAAGTTAAAGAACAGCGCCTCAGCAATCTACTGCAGGCATTGATGGTTGCGGCTTGTGTTGCTGCTATGCCCGTTTTGAAGAAGATACCAACTTCAGTGCTTTGGGGCTACTTTGCCTTCATGGCCATTGAAAGCTTGCCAGGAAATCAATTTTGGGAGAGAATATTGTATCTTTTCACTGCTCCAAGTCGAAGATACATACTGTTGGAGGAATACCATGCCACCTTTGTTGAGACCGTGCCCTTCAAAACAATTGCCATGTTTACTGTGTTCCAGACAGTGTACTTGCTTCTCTGCTTCGGCATAACCTGGATACCAATTGCTGGGGTTCTTTTCCCATTGTTAATCATGCTTCTTGTCCCTGTACGGCAATATTTTCTTCCAAAGTTTTTCAAAGGTGCCCATCTTCAAGAGCTGGATGCAGCAGCATACGAGGAAGCACCTGCTATTGCTTTCAACATGTCCTTTGAAGGTCCAAGTAGCCAGGCACCAACAATCAATATCAGCGGTGGGGAAATTCTTGATGAAGTTATTACGAGGAGTCGTGGTGAGTTTCGCCGCACTCAAAGCCCCAAAACAACAAGTTCAACTCCAACTTCAACAGGAGATATAAGACCAGCCAATAGCCCTCAGTTAGCAAGGAGGATTCCCAGCCCTCGAGTAACTGAATTGAGAGGGGAAAGCAGCCTCAGACCAACCGGGAAGGAGATCAAGTTAATGCAAACACCTAGTCCACGGTCACCAGGTCTTGGAAAAGTTACCAAAGATTTGCCTTGA

>Glyma04g35710.3   sequence type=CDS   gene model=Glyma04g35710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATACATTCATGTATAACTTTGCTAAGGATCGCCAAGATTTGGGACACAAACTATTCCTACCTTGGACTGGATGGGTCTGTGTTTGGACTGCCCTGTTGCTGTTCTTGCTGGCCGTTCTTGGTGCATGCTCAATAATCAATAGATTCACACGCCTTGCTGGTGAATTATTTGGTCTGCTAATTGCAATGCTCTTTATGCAGCAGGCTATAAAGGGTCTTGTGGAAGAGTTTGGTGCACCCAAGAACCAGAGAGAAGGTACCAATCAGATTGCACTTCAATCATCTTGGCTATTTGGCAATGGAATGTTTGCTTTAGTTTTGTCATTTGGTCTTCTTTTTACTGGTCTTCAAAGCCGCAAGGCTAGATCCTGGCGTTATGGCTCAGGTTGGCTACGAGGATTCATAGCTGATTATGGAGTCCCACTAATGGTCCTCATATGGACTGCCGTGTCTTACATACCAGTCAATGAGGTTCCAAGGGGAATCCCTAGGCGACTTTTCAGTCCAAACCCATGGTCTCCTGGTGCATACTCAAATTGGACTGTTGTCAAGGAAATGTTGAATGTGCCCCCCTTATATATTGTTGGAGCATTTATACCAGCAACTATGATTGCTGTGCTTTACTACTTTGATCACAGTGTTGCATCACAACTTGCTCAGCAAAAGGAGTTCAATCTAAGAAAACCCTCATCTTATCATTATGACTTGCTGCTCTTAGGATTTTTGACCATATTGTGTGGACTTATTGGAATCCCTCCTTCCAATGGTGTGATTCCACAATCTCCAATGCATACGAAGAGCTTGGCTACTCTAAAACATCAGCTTTTACGGAATAAGCTTGTATCTACTGCACGAAAAAGCATGCGGAGAAATGTTAATTTGAGCCAGTTATACCAAAATATGAAAGAAGCATATGATGAAATTCAGACTCCATTGGTTCCCCAAATGCCAACTACATTGGGGCTGAAAGAACTGAAGGAATCTACTATTGAACTGGCTTCAAGTCAAGGATATATTGATGCCCCTGTTGATGAGGTTGTCTTTGATGTGAATAAGGATGTGGATGACCTTTTGCCAGTTGAAGTTAAAGAACAGCGCCTCAGCAATCTACTGCAGGCATTGATGGTTGCGGCTTGTGTTGCTGCTATGCCCGTTTTGAAGAAGATACCAACTTCAGTGCTTTGGGGCTACTTTGCCTTCATGGCCATTGAAAGCTTGCCAGGAAATCAATTTTGGGAGAGAATATTGTATCTTTTCACTGCTCCAAGTCGAAGATACATACTGTTGGAGGAATACCATGCCACCTTTGTTGAGACCGTGCCCTTCAAAACAATTGCCATGTTTACTGTGTTCCAGACAGTGTACTTGCTTCTCTGCTTCGGCATAACCTGGATACCAATTGCTGGGGTTCTTTTCCCATTGTTAATCATGCTTCTTGTCCCTGTACGGCAATATTTTCTTCCAAAGTTTTTCAAAGGTGCCCATCTTCAAGAGCTGGATGCAGCAGCATACGAGGAAGCACCTGCTATTGCTTTCAACATGTCCTTTGAAGGTCCAAGTAGCCAGGCACCAACAATCAATATCAGCGGTGGGGAAATTCTTGATGAAGTTATTACGAGGAGTCGTGGTGAGTTTCGCCGCACTCAAAGCCCCAAAACAACAAGTTCAACTCCAACTTCAACAGGAGATATAAGACCAGCCAATAGCCCTCAGTTAGCAAGGAGGATTCCCAGCCCTCGAGTAACTGAATTGAGAGGGGAAAGCAGCCTCAGACCAACCGGGAAGGAGATCAAGTTAATGCAAACACCTAGTCCACGGTCACCAGGTCTTGGAAAAGTTACCAAAGATTTGCCTTGA

Predicted protein sequences of Glyma04g35710

Limit To All Plant Sequences

>Glyma04g35710.2   sequence type=predicted peptide   gene model=Glyma04g35710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEETFVPLRGIKNDLKARIPCYRQDWTSGFQAGIRILAPTTYIFFASAIPVISFGEQLERNTDGSLTAVQTLASTALCGIIHSIIGGQPLLILGVAEPTVLMYTFMYNFAKDRQDLGHKLFLPWTGWVCVWTALLLFLLAVLGACSIINRFTRLAGELFGLLIAMLFMQQAIKGLVEEFGAPKNQREGTNQIALQSSWLFGNGMFALVLSFGLLFTGLQSRKARSWRYGSGWLRGFIADYGVPLMVLIWTAVSYIPVNEVPRGIPRRLFSPNPWSPGAYSNWTVVKEMLNVPPLYIVGAFIPATMIAVLYYFDHSVASQLAQQKEFNLRKPSSYHYDLLLLGFLTILCGLIGIPPSNGVIPQSPMHTKSLATLKHQLLRNKLVSTARKSMRRNVNLSQLYQNMKEAYDEIQTPLVPQMPTTLGLKELKESTIELASSQGYIDAPVDEVVFDVNKDVDDLLPVEVKEQRLSNLLQALMVAACVAAMPVLKKIPTSVLWGYFAFMAIESLPGNQFWERILYLFTAPSRRYILLEEYHATFVETVPFKTIAMFTVFQTVYLLLCFGITWIPIAGVLFPLLIMLLVPVRQYFLPKFFKGAHLQELDAAAYEEAPAIAFNMSFEGPSSQAPTINISGGEILDEVITRSRGEFRRTQSPKTTSSTPTSTGDIRPANSPQLARRIPSPRVTELRGESSLRPTGKEIKLMQTPSPRSPGLGKVTKDLP*

>Glyma04g35710.3   sequence type=predicted peptide   gene model=Glyma04g35710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYTFMYNFAKDRQDLGHKLFLPWTGWVCVWTALLLFLLAVLGACSIINRFTRLAGELFGLLIAMLFMQQAIKGLVEEFGAPKNQREGTNQIALQSSWLFGNGMFALVLSFGLLFTGLQSRKARSWRYGSGWLRGFIADYGVPLMVLIWTAVSYIPVNEVPRGIPRRLFSPNPWSPGAYSNWTVVKEMLNVPPLYIVGAFIPATMIAVLYYFDHSVASQLAQQKEFNLRKPSSYHYDLLLLGFLTILCGLIGIPPSNGVIPQSPMHTKSLATLKHQLLRNKLVSTARKSMRRNVNLSQLYQNMKEAYDEIQTPLVPQMPTTLGLKELKESTIELASSQGYIDAPVDEVVFDVNKDVDDLLPVEVKEQRLSNLLQALMVAACVAAMPVLKKIPTSVLWGYFAFMAIESLPGNQFWERILYLFTAPSRRYILLEEYHATFVETVPFKTIAMFTVFQTVYLLLCFGITWIPIAGVLFPLLIMLLVPVRQYFLPKFFKGAHLQELDAAAYEEAPAIAFNMSFEGPSSQAPTINISGGEILDEVITRSRGEFRRTQSPKTTSSTPTSTGDIRPANSPQLARRIPSPRVTELRGESSLRPTGKEIKLMQTPSPRSPGLGKVTKDLP*

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