SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G62520 | AT | Annotation by Michelle Graham. TAIR10: similar to RCD one 5 | chr5:25098071-25099264 FORWARD LENGTH=309 | SoyBase | E_val: 5.00E-60 | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
| GO:0072593 | GO-bp | Annotation by Michelle Graham. GO Biological Process: reactive oxygen species metabolic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0003950 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: NAD+ ADP-ribosyltransferase activity | SoyBase | N/A | ISS |
| PTHR14453 | Panther | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN | JGI | ISS | |
| PTHR14453:SF5 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF12174 | PFAM | RST domain of plant C-terminal | JGI | ISS | |
| UniRef100_I1JX73 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JX73_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9FJJ3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Probable inactive poly [ADP-ribose] polymerase SRO5 n=1 Tax=Arabidopsis thaliana RepID=SRO5_ARATH | SoyBase | E_val: 2.00E-57 | ISS |
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Glyma04g35560 not represented in the dataset |
Glyma04g35560 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g183100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g35560.1 sequence type=CDS gene model=Glyma04g35560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAACTAACATTCCCTCATCAAGACGAAGATGATTCCGTTGTTTCTGATTGCGAGAGCGGTGTTTCGGGCAGTGGAGTCGTGGTGGCACCACCACCACCACCACCACAACAACAACAACGTGGTTTTTTCGTTAGGCTTGGAGAAGGTGACGTGGTTCACGATCTTATCAAGACAAGGTTTATTCGTGGCCTCGGCATGCTCGGGCCTAAAACCGAGGTTGTCTCCGTTCGCCGAAACGCGTGCTCCGACGTCGTTTCACAGGCGCGCCTTCACTCGTTTCATGCTCACGCCAGGGCGGTGGCGAGGCTCCGCGGCGGCGGGAATCATGCCAACGTGAAGTACGCCTGGTATCGTACGAACGGCGAGGACGACGTGAACGACATCGTTTCGCAAGGCTTCGGCTTCGCGCACGGCCCGAAACTCGTTCTCTCCCCTGACGACGCTCCTCTCCAAAGTGCGAGAGGGTGTGGGGTTGGGAAGGACGGTGTGAGGCACGCGTTACTGTGCCGCGTGATTCTAGGGAGATCAGAGATTGTTCGTGATAACACAGAACACTGCTATCCGAGTTGTGAAGAGTATGATTCTGGAGTGGATAGTTTTTCGGGGCCTACAAAGTACATCATTTGGAGCAATCGCATGAACACTCATGTTTTGCCTGCGTATGTTGTAAGCTTCAGAGTTTCTTCCTTCAAAGGGATGGAGAAGAGTGAAGAAGAACCTTTGAGACCTACTTCGCCTTGGATGCCATTCCCAACTCTGATTTCTGCGCTTTCCAAGGTTTTGCCTCCATGTGATATTGCCCTCATCTCCAAGTTCTACAAAGATAAAAAAGACAAGAAGATTTTACGACATGAATTGATACAAAGAGTGAGAGAAATAGCTGGAGATAAGTTGCTAGTTGCGGCCATCAAATCTTATAGAGACAACAAGAAGAAACCAAGCTTTCTACAATCAAGGTCAAAGAATGGCTTAGCAACGAGGATAAAATAA
>Glyma04g35560.1 sequence type=predicted peptide gene model=Glyma04g35560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MELTFPHQDEDDSVVSDCESGVSGSGVVVAPPPPPPQQQQRGFFVRLGEGDVVHDLIKTRFIRGLGMLGPKTEVVSVRRNACSDVVSQARLHSFHAHARAVARLRGGGNHANVKYAWYRTNGEDDVNDIVSQGFGFAHGPKLVLSPDDAPLQSARGCGVGKDGVRHALLCRVILGRSEIVRDNTEHCYPSCEEYDSGVDSFSGPTKYIIWSNRMNTHVLPAYVVSFRVSSFKGMEKSEEEPLRPTSPWMPFPTLISALSKVLPPCDIALISKFYKDKKDKKILRHELIQRVREIAGDKLLVAAIKSYRDNKKKPSFLQSRSKNGLATRIK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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