Glyma04g35220 - SoyBase

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Report for Sequence Feature Glyma04g35220

Feature Type:	gene_model
Chromosome:	Gm04
Start:	41557311
stop:	41561936
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g35220

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G48000	AT	Annotation by Michelle Graham. TAIR10: aldehyde dehydrogenase 2B4 \| chr3:17717082-17719843 REVERSE LENGTH=538	SoyBase	E_val: 0	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0004028	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 3-chloroallyl aldehyde dehydrogenase activity	SoyBase	N/A	ISS
GO:0004029	GO-mf	Annotation by Michelle Graham. GO Molecular Function: aldehyde dehydrogenase (NAD) activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
KOG2450	KOG	Aldehyde dehydrogenase	JGI		ISS
PTHR11699	Panther	ALDEHYDE DEHYDROGENASE-RELATED	JGI		ISS
PTHR11699:SF46	Panther	SUCCINATE-SEMIALDEHYDE DEHYDROGENASE-RELATED	JGI		ISS
PF00171	PFAM	Aldehyde dehydrogenase family	JGI		ISS
UniRef100_I1JX57	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JX57_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q84V96	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Aldehyde dehydrogenase 1 n=1 Tax=Lotus corniculatus RepID=Q84V96_LOTCO	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g35220

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g35220

Paralog	Evidence	Comments
Glyma06g19560	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g35220 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g181100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g35220

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g35220

Limit To All Plant Sequences

>Glyma04g35220.2   sequence type=CDS   gene model=Glyma04g35220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGTCTTCAATTCATTGCATAAAACTTCCACAAGATTTTTTGTTCCCACAGGGAGAAACTCTGGCAAGTGGGGAAACGTTAATAGATTCAGCACTGCAGCAGCAGTTGAGGAATTAATCATTCCACAAGTTCCAATAACATACACTAAGCATTTGATAAATGGACAATTTGTGGATGCTGATGCTGCTTCAGGGAAAACTTTTCCAACATATGACCCGCGCACAGGAGAAGTGATTGCTCGTGTTGCTGAAGGTGATGCAGAAGATATCAACCGTGCAGTATCAGCAGCTCGCAAAGCCTTTGATGAAGGACCTTGGCCAAAAATGACTGCTTATGAAAGATGCCAGATAATACTGCGCTTTGCTGATTTGACATGGAACAATGGAAAGCCTTATGAACAATGGGCCACTTCTGAATTACCAACGTTTGTGCGTTTGTTTCGTTACTATGCTGCTGATAAAATCCATGGTCTGACAGTGCCTGCTGATGGAAATTATCATGTGGAGACATTGCATGAACCAATTGGTGTTGCAGGACAAATCATACCTTGGAACTTTCCTCTCCTCATGTTTGCTTGGAAAGTTGGACCAGCTCTTGCATGTGGAAATACTGTCATCCTTAAGACTGCTGAACAAACACCTTTAACAGCTCTCTATGTGGCAAAAGCCGGTCTTCCACCAGGTGTTTTGAATGTAGTTTCTGGCTATGGTCCAACTGCTGGTGCAGCTCTAGCAAGTCATATGGATGTTGACAAGCTAGCATTCACCGGATCTACTGAGACTGGAAAAGTTGTACTTGAATTGGCCGCAAGAAGCAATTTGAAGCCTGTGATATTGAACTTGGAGGGAAATCTCCTTTCATTGGGGCAATGTTGCTGTGCTGGGTCTCGTACCTTTGTACATGAGCGTATCTATGATGAGTTCTTGGAGAAAGCAAAGGCTCGTGCTTTGAAACGTGTTGTTGGGGATCCCTTCATAAAGGGTGTCGAACAAGGTCCTCAGGTGTGTTTTGCTAGTACTCTTAGGCAGAATATTATTGATTGTGTTCTTTCTTATCATTTTTGTTCCTTTTACAGTTACTACAAGGCCACCCTTGAATGTGGGGGTGACAGAATTGGCTCAAAGGGCTTCTTTGTCCAGCCTACTGTCTTCTCAAATGTTCAGAGAGTTGGAACTGTGTGGATCAATTGCTTTGATGTTTTTGATGCTGCAATTCCTTTTGGAGGGTACAAAATGAGCGGCATTAGCAGGGAGAAGGGTATCTACAGCCTCAACAATTACCTGCAAGTGAAAGCTGTGGTTTCACCAGTGAAGAATCCTGCATGGCTGTGA

Predicted protein sequences of Glyma04g35220

Limit To All Plant Sequences

>Glyma04g35220.2   sequence type=predicted peptide   gene model=Glyma04g35220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVFNSLHKTSTRFFVPTGRNSGKWGNVNRFSTAAAVEELIIPQVPITYTKHLINGQFVDADAASGKTFPTYDPRTGEVIARVAEGDAEDINRAVSAARKAFDEGPWPKMTAYERCQIILRFADLTWNNGKPYEQWATSELPTFVRLFRYYAADKIHGLTVPADGNYHVETLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTVILKTAEQTPLTALYVAKAGLPPGVLNVVSGYGPTAGAALASHMDVDKLAFTGSTETGKVVLELAARSNLKPVILNLEGNLLSLGQCCCAGSRTFVHERIYDEFLEKAKARALKRVVGDPFIKGVEQGPQVCFASTLRQNIIDCVLSYHFCSFYSYYKATLECGGDRIGSKGFFVQPTVFSNVQRVGTVWINCFDVFDAAIPFGGYKMSGISREKGIYSLNNYLQVKAVVSPVKNPAWL*

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