Glyma04g35140 - SoyBase

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Report for Sequence Feature Glyma04g35140

Feature Type:	gene_model
Chromosome:	Gm04
Start:	41478237
stop:	41479699
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g35140

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G70310	AT	Annotation by Michelle Graham. TAIR10: spermidine synthase 2 \| chr1:26485497-26487352 REVERSE LENGTH=340	SoyBase	E_val: 1.00E-57	ISS
GO:0000096	GO-bp	Annotation by Michelle Graham. GO Biological Process: sulfur amino acid metabolic process	SoyBase	N/A	ISS
GO:0008295	GO-bp	Annotation by Michelle Graham. GO Biological Process: spermidine biosynthetic process	SoyBase	N/A	ISS
GO:0008652	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular amino acid biosynthetic process	SoyBase	N/A	ISS
GO:0009069	GO-bp	Annotation by Michelle Graham. GO Biological Process: serine family amino acid metabolic process	SoyBase	N/A	ISS
GO:0009616	GO-bp	Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing	SoyBase	N/A	ISS
GO:0010050	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative phase change	SoyBase	N/A	ISS
GO:0042545	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall modification	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004766	GO-mf	Annotation by Michelle Graham. GO Molecular Function: spermidine synthase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
PTHR11558	Panther	SPERMIDINE SYNTHASE	JGI		ISS
PTHR11558:SF11	Panther	PUTRESCINE N-METHYLTRANSFERASE	JGI		ISS
PF01564	PFAM	Spermine/spermidine synthase	JGI		ISS
UniRef100_I1JX52	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JX52_SOYBN	SoyBase	E_val: 9.00E-71	ISS
UniRef100_O48659	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Spermidine synthase 2 n=1 Tax=Hyoscyamus niger RepID=SPD2_HYONI	SoyBase	E_val: 4.00E-57	ISS

Expression Patterns of Glyma04g35140

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g35140 not represented in the dataset	Glyma04g35140 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g35140 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g180500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g35140

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g35140

Limit To All Plant Sequences

>Glyma04g35140.3   sequence type=transcript   gene model=Glyma04g35140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTAAAAGAAAATGGTTTACATGTTACAAGGACAAAGACGAAAAAATGAATGGATTAGAAGAACTAAAATAAAATAACAATGACTAAAAGAAAAAAAAAGGAATCTTATAATAAAGAATTGATTACATTATAAGAAATAAAACTATATTCATGAGCAAGGTTAGTAAACTCAAAAGTTCATGTAAATTTATAAAATTTGTGTAAACTCGACTCGTAAAGTTGACTAGTAGACTCGTAAGATTTATATAATAAAAAATAATTTAAAAACCTATTAATTAATAATTAACCAAAAAGATCAAACGTGTTACTCCCACAGCTGAGACACTTTCTAACAAGCCTATTAAAAAAATACTTTCTAACAAAAGGATCAACCTCACATTTGATTTTGTTTTTGTTTTTCATAATCTATGTTCTTCCTCTCTACTAGTTATTTTCCTTTGTTTTTAGGCTGTCTTATTCACCGATAATTGGAGATGATCTATGTTTCTATATATAATATTCACCGATGCATCTTTCAATAAAGCTAACCAAATTACGTGTATTGCAGGCCGAGCACACTTCTTGAAGGTAGAAAAGATTTGTTTCCAAGGGAAATCTGAATACCAGACTATGCTAGTTTTTCAGTCATCAACATATGGTAAGGTTTTTGTCCTTGATGGAGCACTCCAACTCACAGAGAAGGACGAATGTGCTTACCAAGAAATGATGACTCACCTTCCTCTTTGCTCTATCCTTAACCCAAAAAAGGTTTCGTATGAGACAAATACATAGTCTTACGTACATTTCAATTTTCAATATTGCATATTAGTCTATAACTATATATGACTAACCATAATCTGTGGAAATTAATTAATCTCTAAGATTATCTACCCTCACTTCTCATATATGTTTAGGTGCTGCTTATTGGTGGTGGAGATGGTGGCATTCTAAGGGAAATTTCCCGCCACTCGTCCGTTGAACAAATCGACATATGTGAAATAGACACAATGCTGATTGATGTAAATAAAATGTTTGACTCCTTAATTTCCCTTGAATAAAGAGTCAAATTTTGACTTTATGTACACTTATCGCGTAATTAAAGTGTCCAACTGTTTGTATAAAGGATATAAAAGTTATATTCATTCCTTAAGTATTTTTAGTATTATTTTTAATCTAAATTAAAATTTTACTTTAATAATTTATATGCATCTTTAATATAAAATTTTATTACACGGATTATTGAAGTAAAAGTACAATTTTGATTGAAGAAGACTTAAGAAACTACATTTAAGTTTAGTCATAACTTCCTCTTTTCTTATTTATAAGAATCAAATTAAAAAATTGACTTGATCCTATT

Coding sequences of Glyma04g35140

Limit To All Plant Sequences

>Glyma04g35140.2   sequence type=CDS   gene model=Glyma04g35140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTCTATATATAATATTCACCGATGCATCTTTCAATAAAGCTAACCAAATTACGTGTATTGCAGGCCGAGCACACTTCTTGAAGGTAGAAAAGATTTGTTTCCAAGGGAAATCTGAATACCAGACTATGCTAGTTTTTCAGTCATCAACATATGGTAAGGTTTTTGTCCTTGATGGAGCACTCCAACTCACAGAGAAGGACGAATGTGCTTACCAAGAAATGATGACTCACCTTCCTCTTTGCTCTATCCTTAACCCAAAAAAGGTGCTGCTTATTGGTGGTGGAGATGGTGGCATTCTAAGGGAAATTTCCCGCCACTCGTCCGTTGAACAAATCGACATATGTGAAATAGACACAATGCTGATTGATGTAAATAAAATGTTTGACTCCTTAATTTCCCTTGAATAA

>Glyma04g35140.3   sequence type=CDS   gene model=Glyma04g35140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTCTATATATAATATTCACCGATGCATCTTTCAATAAAGCTAACCAAATTACGTGTATTGCAGGCCGAGCACACTTCTTGAAGGTAGAAAAGATTTGTTTCCAAGGGAAATCTGAATACCAGACTATGCTAGTTTTTCAGTCATCAACATATGGTAAGGTTTTTGTCCTTGATGGAGCACTCCAACTCACAGAGAAGGACGAATGTGCTTACCAAGAAATGATGACTCACCTTCCTCTTTGCTCTATCCTTAACCCAAAAAAGGTTTCGTATGAGACAAATACATAG

Predicted protein sequences of Glyma04g35140

Limit To All Plant Sequences

>Glyma04g35140.2   sequence type=predicted peptide   gene model=Glyma04g35140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFLYIIFTDASFNKANQITCIAGRAHFLKVEKICFQGKSEYQTMLVFQSSTYGKVFVLDGALQLTEKDECAYQEMMTHLPLCSILNPKKVLLIGGGDGGILREISRHSSVEQIDICEIDTMLIDVNKMFDSLISLE*

>Glyma04g35140.3   sequence type=predicted peptide   gene model=Glyma04g35140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFLYIIFTDASFNKANQITCIAGRAHFLKVEKICFQGKSEYQTMLVFQSSTYGKVFVLDGALQLTEKDECAYQEMMTHLPLCSILNPKKVSYETNT*

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