SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G25610 | AT | Annotation by Michelle Graham. TAIR10: BURP domain-containing protein | chr5:8914498-8916684 REVERSE LENGTH=392 | SoyBase | E_val: 2.00E-61 | ISS |
| GO:0009269 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to desiccation | SoyBase | N/A | ISS |
| GO:0009409 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cold | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005768 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endosome | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005802 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network | SoyBase | N/A | ISS |
| GO:0045735 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nutrient reservoir activity | SoyBase | N/A | ISS |
| PF03181 | PFAM | BURP domain | JGI | ISS | |
| UniRef100_I1JX51 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JX51_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q8GSG3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Resistant specific protein-1(4) n=1 Tax=Vigna radiata RepID=Q8GSG3_VIGRA | SoyBase | E_val: 2.00E-103 | ISS |
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Glyma04g35130 not represented in the dataset |
Glyma04g35130 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g180400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g35130.1 sequence type=CDS gene model=Glyma04g35130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCATCTCACCCTTCCTCCAAAAGGTCTATATATATCTTTGGTTTCTCTGTGTCTCAATATCACATTCTCATCTCTAACCACTTTGCTTCAGCTATGGAGTTTCGTTGCCTTCCATTGGTTTTCTCTCTCAATCTGATCCTGATGACAGCTCATGCTGCCATACCTCCAGAAGTTTACTGGGAAAGGATGCTTCCAAATACCCCAATGCCCAAAGCAATCATAGACTTTCTAAACCTTGATCAACTTCCTCTTTGGTATGGTGCTAAGGAAACCCAATCTACAGATCAAATATTCCTGTATGATGCTAAGAAAACCCAATCAACAGATCAAGTTCCTCCTATCTTTTATGGTGATAAGAAAACCCAATCAACAGATGAAGTTCCTCCTATCTTTTATGGTGCTAAGAAAACTCAATCAATAGATGGAGTTCCTCCTATCTTTTATGGTGCTAAGAAAACCCAATCAACAGATGAAGTTCCTCCATACTTTTATGGTGCTAAGAAAATCCAATCAACAGATGAAGTTCCTCCTATCTTTTATGGTGCTAAGAAAACCCAATCAACAGATCAAATTCCTCCTTTTTTTTCTTATGGTGCTAAGAAAACCCAATCAACAGATCAAATTCCTCCTTTTTTTTCTTATGGTGCTAAGAAAACCCAATCAACAGATCAAGTTCCTCCTTTTTTTTATGGTGCTAAGAAAACCCAATCAACAGATCAAGTTCCTATCTTTTATGGTGCTAAGAAAACTCAATCAACAGATCAAGTTCCTATCTTTTATGGTGCTAAGAAAATCCAATCAACAGATCAAACTCCTCTTTTTTTATATGGTGCTAAGAAAACCCAATCCGAAGATCAAGTTCCTATTTTTTGGTACGGTATTAAGAAAACTCAATCCGAAGATCAACCTCCTCTTTGGTACGGTGTTAAGAAAACCTATGTTGCAAAAAGAAGTCTTTCACAAGAAGATGAAACGATCCTTGTTGCTAATGGTCATCAACATGACATCCCAAAAGCAGACCAAGTTTTCTTTGAAGAAGGATTAAGGCCTGGCACAAAATTGGATGCTCACTTCAAGAAAAGAGAAAATGTAACCCCATTGTTGCCTCGCCAAATTGCACAACATATACCGTTGTCATCAGCAAAGATAAAAGAAATAGTTGAGATGCTTTTTGTGAACCCAGAGCCAGAGAATGTTAAGATTCTAGAGGAAACCATTAGTATGTGTGAAGTGCCTGCAATAACTGGAGAAGAAAGATATTGTGCAACTTCATTAGAGTCCATGGTAGATTTTGTCACTTCTAAGCTTGGGAAGAATGCTCGAGTTATTTCTACAGAAGCAGAAAAGGAAAGTAAGTCCCAAAAATTCTCGGTGAAAGATGGAGTGAAGTTGTTAGCAGAAGATAAGGTCATTGTTTGTCATCCTATGGATTACCCATATGTTGTGTTTATGTGTCATGAGATATCAAATACTACTGCGCATTTTATGCCTTTGGAGGGAGAAGATGGAACCAGAGTTAAAGCTGCAGCTGTATGCCACAAAGACACATCAGAATGGGATCCAAACCATGTGTTTTTACAAATGCTTAAAACCAAGCCTGGAGCTGCTCCAGTGTGTCACATCTTCCCTGAGGGCCACCTTCTCTGGTTTGCCAAATAG
>Glyma04g35130.1 sequence type=predicted peptide gene model=Glyma04g35130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPSHPSSKRSIYIFGFSVSQYHILISNHFASAMEFRCLPLVFSLNLILMTAHAAIPPEVYWERMLPNTPMPKAIIDFLNLDQLPLWYGAKETQSTDQIFLYDAKKTQSTDQVPPIFYGDKKTQSTDEVPPIFYGAKKTQSIDGVPPIFYGAKKTQSTDEVPPYFYGAKKIQSTDEVPPIFYGAKKTQSTDQIPPFFSYGAKKTQSTDQIPPFFSYGAKKTQSTDQVPPFFYGAKKTQSTDQVPIFYGAKKTQSTDQVPIFYGAKKIQSTDQTPLFLYGAKKTQSEDQVPIFWYGIKKTQSEDQPPLWYGVKKTYVAKRSLSQEDETILVANGHQHDIPKADQVFFEEGLRPGTKLDAHFKKRENVTPLLPRQIAQHIPLSSAKIKEIVEMLFVNPEPENVKILEETISMCEVPAITGEERYCATSLESMVDFVTSKLGKNARVISTEAEKESKSQKFSVKDGVKLLAEDKVIVCHPMDYPYVVFMCHEISNTTAHFMPLEGEDGTRVKAAAVCHKDTSEWDPNHVFLQMLKTKPGAAPVCHIFPEGHLLWFAK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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