Glyma04g34800 - SoyBase

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Report for Sequence Feature Glyma04g34800

Feature Type:	gene_model
Chromosome:	Gm04
Start:	41042849
stop:	41046283
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g34800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G48080	AT	Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein \| chr3:17753104-17755145 REVERSE LENGTH=629	SoyBase	E_val: 4.00E-154	ISS
GO:0006629	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid metabolic process	SoyBase	N/A	ISS
GO:0009627	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance	SoyBase	N/A	ISS
GO:0009697	GO-bp	Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0004806	GO-mf	Annotation by Michelle Graham. GO Molecular Function: triglyceride lipase activity	SoyBase	N/A	ISS
GO:0004871	GO-mf	Annotation by Michelle Graham. GO Molecular Function: signal transducer activity	SoyBase	N/A	ISS
GO:0016298	GO-mf	Annotation by Michelle Graham. GO Molecular Function: lipase activity	SoyBase	N/A	ISS
PF01764	PFAM	Lipase (class 3)	JGI		ISS
UniRef100_D6BLY3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: EDS1 n=1 Tax=Glycine max RepID=D6BLY3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1JX17	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JX17_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma04g34800

Locus	Gene Symbol	Protein Name
	EDS1a	Enhanced disease susceptibility 1 gene b

Expression Patterns of Glyma04g34800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g34800

Paralog	Evidence	Comments
Glyma06g19920	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g34800 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g177700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g34800

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g34800

Limit To All Plant Sequences

>Glyma04g34800.1   sequence type=CDS   gene model=Glyma04g34800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGGAGGGTTGCTTGGAGATAACCTTGGATTGAAGGAAGATGTGATCAAGAGGGTGTGTGGTTTGGCCTCCAAAGCTCACAATCACAAGTCAACGGACAAGCTCTACTTTTACGATAAGGTTCGGACTTCTTCGGGGACATACCATGTTTTCAGCTTCTCGGGATCTTGGGATCCCGCTGAATGGTTTTTTAGCAAACCCTTTGGCGGATCCAAGATAGATCCTACCCAATTTCCTTCACTCAGAAGTATTGGTAACGATGAACCTGCTTTGGTGAACGAAGGCTTCGCAAAGAGATTCGATCGCGTATTGAAAACTAGCTTTAAAGCCGAGGTGAATAAGGCTATTGGAGATGGGAAGCAAGTAGTGTTTACGGGGCACTCCTCTGGTGCTGCAATAGCCATTCTTGCTACCTTTTGGGCATTGGAAGAGTATCTTAACCCTACAAAAATCCAAAAACCCACGCCACCCTTTTGTGTCACTTTTGGGTCTCCCTTAATTGGCAATCATATATTCTCTCACGCTTCAAGGAGAGAAAATTGGTCTCGCTATTTCATACACTTTGTTTTGAGATATGACATAGTGCCAAGGATTTTGCTTTCTCGCTTGGCTTCTATTAAGCAAACTTTTGGTTCTGTTCTCCAATTCTTGAATCCCAATTCCAAAACTTCCACCCAGGATCCAACAAGGGCTAGTTTAATTTCTGAATTTTACAAAACTGTGATGACAAACGCAGCGAGTGTTACAAGCCATGCTGCGTGTATTCTCATGGGAAGCACAAGTTTGTTACTTGGGACAGTGGCGAATTTTGTTGAGTTGAGCCCTTATAGGCCCTTTGGAACATTTATTTTCTGCAACGGAAATGGACAATTGATTGTGGTGAAAAACTCAGATGCTGTTTTGCAACTCTTGTTCCACACTGCTCAGATGAGCGATTTGGCAGAACTTCCAGAAGTTGCCAATGTTAGCATATTGCAACACCAGGCCTATGAGGCTGAATTGGATGATAGCTTGGGAATGCAGAATGTAGTGTACTTGGAGCAACTAGAGCAACTTCCGTTGTCTGCTGATGGTTCTAATAGCGATGTTGCAACAATCAGTGCAGCCTTGGATGGCCTTGGACTGAGCACAAGAGCAAGGCTGTGTCTACGAGCAGCTGGTGAGTTGGAAAAGCAGAAGCTAAAAAATGAGGAGAAAATCAAGAAGGAGATTCAGGAGAAAGCCGTGCCAAGCATGACGAAGCTTCAAAATTACAAAACAACATGTGAGATGCACAAGGGGAAGGGCTATTACGATGCCTTCAAGGTGCAAAATGAGGAAAACGACTTCCAAGCAAATGTGAAGAGGCTTGTGTTAGCAGGGGTATGGGATGAAGTGATTGAGATGCTAAAGAGGTATGAACTCCCAGACGAGTTTGAAGGGAATTCAAAATGGATTGAACATGGAACTGAATTTCGTCGCCTTGTGGAGCCTCTAGACATTGCAAACTATCACCGCCACTTGAAGAATGAGGACACAGGACCTTACATGATAAGGGCCAGGCCAAAACGGTATAGGTACACTCAAAGATGGTTGGAGCATGCTAAAAGGGTGCCAAAACCTGCTCCTATCACTGAATCAACCTTTTGGGCTGAAGTAGAAGAGCTTTATAGCTGGATTAACAGCAAGAGGCATCTTGATGATGAAGTAAAGCAAAGGGTTGTGCAGCTTCAGAAAGACCTTAAAAAGTGGACTGATGATGAGAAGGTACTAACCAAGGATACGTTCTTGAAGGATCCTAACTTTATTAGGTGGTGGGATATTCTACCTCAGGAACTCAGGGTCACTTCCTTCTAG

Predicted protein sequences of Glyma04g34800

Limit To All Plant Sequences

>Glyma04g34800.1   sequence type=predicted peptide   gene model=Glyma04g34800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGGLLGDNLGLKEDVIKRVCGLASKAHNHKSTDKLYFYDKVRTSSGTYHVFSFSGSWDPAEWFFSKPFGGSKIDPTQFPSLRSIGNDEPALVNEGFAKRFDRVLKTSFKAEVNKAIGDGKQVVFTGHSSGAAIAILATFWALEEYLNPTKIQKPTPPFCVTFGSPLIGNHIFSHASRRENWSRYFIHFVLRYDIVPRILLSRLASIKQTFGSVLQFLNPNSKTSTQDPTRASLISEFYKTVMTNAASVTSHAACILMGSTSLLLGTVANFVELSPYRPFGTFIFCNGNGQLIVVKNSDAVLQLLFHTAQMSDLAELPEVANVSILQHQAYEAELDDSLGMQNVVYLEQLEQLPLSADGSNSDVATISAALDGLGLSTRARLCLRAAGELEKQKLKNEEKIKKEIQEKAVPSMTKLQNYKTTCEMHKGKGYYDAFKVQNEENDFQANVKRLVLAGVWDEVIEMLKRYELPDEFEGNSKWIEHGTEFRRLVEPLDIANYHRHLKNEDTGPYMIRARPKRYRYTQRWLEHAKRVPKPAPITESTFWAEVEELYSWINSKRHLDDEVKQRVVQLQKDLKKWTDDEKVLTKDTFLKDPNFIRWWDILPQELRVTSF*

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