Glyma04g34660 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma04g34660): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma04g34660): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma04g34660

Feature Type:	gene_model
Chromosome:	Gm04
Start:	40864691
stop:	40868989
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g34660

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G59640	AT	Annotation by Michelle Graham. TAIR10: BIG PETAL P \| chr1:21909464-21911030 REVERSE LENGTH=264	SoyBase	E_val: 1.00E-72	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009062	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid catabolic process	SoyBase	N/A	ISS
GO:0009694	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid metabolic process	SoyBase	N/A	ISS
GO:0009753	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus	SoyBase	N/A	ISS
GO:0009827	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification	SoyBase	N/A	ISS
GO:0009860	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube growth	SoyBase	N/A	ISS
GO:0010162	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed dormancy process	SoyBase	N/A	ISS
GO:0048441	GO-bp	Annotation by Michelle Graham. GO Biological Process: petal development	SoyBase	N/A	ISS
GO:0048443	GO-bp	Annotation by Michelle Graham. GO Biological Process: stamen development	SoyBase	N/A	ISS
GO:0048446	GO-bp	Annotation by Michelle Graham. GO Biological Process: petal morphogenesis	SoyBase	N/A	ISS
GO:0048481	GO-bp	Annotation by Michelle Graham. GO Biological Process: ovule development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PTHR12565	Panther	STEROL REGULATORY ELEMENT-BINDING PROTEIN	JGI		ISS
PTHR12565:SF7	Panther	CENTROMERE-BINDING PROTEIN 1, CBP-1	JGI		ISS
PF00010	PFAM	Helix-loop-helix DNA-binding domain	JGI		ISS
UniRef100_B9R912	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9R912_RICCO	SoyBase	E_val: 1.00E-93	ISS
UniRef100_I1JX08	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JX08_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g34660

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g34660 not represented in the dataset	Glyma04g34660 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g34660

Paralog	Evidence	Comments
Glyma06g20000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g34660 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g176900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g34660

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g34660

Limit To All Plant Sequences

>Glyma04g34660.2   sequence type=transcript   gene model=Glyma04g34660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGGGATTTGGCGAAGACGGTTAGGGTGGAAAAGGATAAGAATCGCGGTGTGCGCAGTGCGCCACTTGAGTCGAATATCCATCACTCACTCACACATTGGTTTTCTCTCTCTGACTGTCACCCTCATCCATTAACAGTCTCCATCACTCTCCTCTCCCTCCTAATTACAATTTAATAAATCCACCTCACTCATTCATCCCTTCTTCACTCTTCCAAAACCATTGAATCACTCCAATGGATCCTCCTCTCATCAGCGACTCCACATTCTCCCCCGCTTACTCCCTCGCCGAGATTTGGCCTGGAATGCCCCATTTTCCCGATCACTCTCACCTCACCGCCACCGCTCCCACCAAGGGAAAGGACTCCACCGCCGCCGACGAGGTCCTCTCCTCCACCACCACTGCCAACCTATCCAATTGAGTGTGAAGCTGAGTGCTGATGGCATGTGTGGAAATTTGAACAGAATGATTCTGGTAGCAACAAACGGATGAAGGTAGGAGGGTCCAGTTTTGAAAACGATGGTTTCAAAGCGGAGGCAGAAGCAAGTTCTGTGGGTGGTAACAAGTCAAGTGAGCAAAGCAATAAACCTTGTGAGGCACCTAAGCCAGACTATATTCATGTGAGAGCAAGAAGGGGCCAAGCTACCGATAGCCACAGTCTAGCAGAGAGAGCAAGAAGAGAAAAGATCAGTGAGAGGATGAAAATTCTTCAGGATTTGGTGCCAGGGTGTAACAAGGTAATCGGTAAAGCACTTGTCCTAGATGAGATAATCAACTACATCCAGTCGCTGCAGCGTCAAGTTGAGTTCCTTTCAATGAAGCTTGAAGCAGTTAATTCAAGAATGAACACGAACCCTACTATTGATGGGTTTCCTTCAAAAGATGTTGGTACTCAGCCATTTGACATTGCTGGAATGGTATTTGGATCACAAGCAGCAAGGGGGTATGCTCAGGGATCATCACATCCTGGGTGGCTGCATATGCAGATAGGTGGTGGGTTTGAGACAACATAATTCAGAGAAGTCTCATTGGGAATGACATATCAACCGATAAGATTGATTTTCTATTTAAAAAAAACAATAGTGGGTTGGTTACATAGTGTGCTTTTTTAACAACCTAGTCAACTGTTGCCGAATGTTGTAGGTTTGTATTTCCATTGTTATAGTATGATATTATTTATAGAAAGTGCATCTAAATCGCATGTGCTTCGTTATATTAGCAATTAGCGAGTAGAAAACAATCTTAGTGTGGTTTTCGTTTTTTAATCCTGCTGTGATAGGATTCCTGCCTCCTGATTTGATTTGTATAACTATATATATTGCAGGTATGCAATTGTGTATTCTGAATGATGATAGTTTGAAAATGATTGAGTCTGACAATTTGAATCATTACTGCATTAAAAAAAAGGACAATTTGAGTCATTAACAGGAGCAGATTAAGAGAACGCTAGTGCGTTTGAAATCATGTATTGTCAATCTTGTTTTTTATTTAAATTTTTATTTGTTTTC

Coding sequences of Glyma04g34660

Limit To All Plant Sequences

>Glyma04g34660.1   sequence type=CDS   gene model=Glyma04g34660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCCTCCTCTCATCAGCGACTCCACATTCTCCCCCGCTTACTCCCTCGCCGAGATTTGGCCTGGAATGCCCCATTTTCCCGATCACTCTCACCTCACCGCCACCGCTCCCACCAAGGGAAAGGACTCCACCGCCGCCGACGAGGTCCTCTCCTCCACCACCACTGCCAACCTATCCAATAATGATTCTGGTAGCAACAAACGGATGAAGGTAGGAGGGTCCAGTTTTGAAAACGATGGTTTCAAAGCGGAGGCAGAAGCAAGTTCTGTGGGTGGTAACAAGTCAAGTGAGCAAAGCAATAAACCTTGTGAGGCACCTAAGCCAGACTATATTCATGTGAGAGCAAGAAGGGGCCAAGCTACCGATAGCCACAGTCTAGCAGAGAGAGCAAGAAGAGAAAAGATCAGTGAGAGGATGAAAATTCTTCAGGATTTGGTGCCAGGGTGTAACAAGGTAATCGGTAAAGCACTTGTCCTAGATGAGATAATCAACTACATCCAGTCGCTGCAGCGTCAAGTTGAGTTCCTTTCAATGAAGCTTGAAGCAGTTAATTCAAGAATGAACACGAACCCTACTATTGATGGGTTTCCTTCAAAAGATGTTGGTACTCAGCCATTTGACATTGCTGGAATGGTATTTGGATCACAAGCAGCAAGGGGGTATGCTCAGGGATCATCACATCCTGGGTGGCTGCATATGCAGATAGGTGGTGGGTTTGAGACAACATAA

>Glyma04g34660.2   sequence type=CDS   gene model=Glyma04g34660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGGTAGGAGGGTCCAGTTTTGAAAACGATGGTTTCAAAGCGGAGGCAGAAGCAAGTTCTGTGGGTGGTAACAAGTCAAGTGAGCAAAGCAATAAACCTTGTGAGGCACCTAAGCCAGACTATATTCATGTGAGAGCAAGAAGGGGCCAAGCTACCGATAGCCACAGTCTAGCAGAGAGAGCAAGAAGAGAAAAGATCAGTGAGAGGATGAAAATTCTTCAGGATTTGGTGCCAGGGTGTAACAAGGTAATCGGTAAAGCACTTGTCCTAGATGAGATAATCAACTACATCCAGTCGCTGCAGCGTCAAGTTGAGTTCCTTTCAATGAAGCTTGAAGCAGTTAATTCAAGAATGAACACGAACCCTACTATTGATGGGTTTCCTTCAAAAGATGTTGGTACTCAGCCATTTGACATTGCTGGAATGGTATTTGGATCACAAGCAGCAAGGGGGTATGCTCAGGGATCATCACATCCTGGGTGGCTGCATATGCAGATAGGTGGTGGGTTTGAGACAACATAA

Predicted protein sequences of Glyma04g34660

Limit To All Plant Sequences

>Glyma04g34660.1   sequence type=predicted peptide   gene model=Glyma04g34660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPPLISDSTFSPAYSLAEIWPGMPHFPDHSHLTATAPTKGKDSTAADEVLSSTTTANLSNNDSGSNKRMKVGGSSFENDGFKAEAEASSVGGNKSSEQSNKPCEAPKPDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNTNPTIDGFPSKDVGTQPFDIAGMVFGSQAARGYAQGSSHPGWLHMQIGGGFETT*

>Glyma04g34660.2   sequence type=predicted peptide   gene model=Glyma04g34660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKVGGSSFENDGFKAEAEASSVGGNKSSEQSNKPCEAPKPDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNTNPTIDGFPSKDVGTQPFDIAGMVFGSQAARGYAQGSSHPGWLHMQIGGGFETT*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain