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Integrating Genetics and Genomics to Advance Soybean Research


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Report for Sequence Feature Glyma04g34571

Feature Type:gene_model
Chromosome:Gm04
Start:40751672
stop:40751958
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g34571
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G28350AT Annotation by Michelle Graham. TAIR10: Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor | chr5:10320301-10326781 FORWARD LENGTH=1087 SoyBaseE_val: 3.00E-13ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR22746Panther FAMILY NOT NAMED JGI ISS
PTHR22746:SF4Panther SUBFAMILY NOT NAMED JGI ISS
UniRef100_G0Y6T6UniRef Annotation by Michelle Graham. Most informative UniRef hit: WD40-like protein n=1 Tax=Arachis hypogaea RepID=G0Y6T6_ARAHY SoyBaseE_val: 7.00E-14ISS
UniRef100_UPI0002338A61UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002338A61 related cluster n=1 Tax=unknown RepID=UPI0002338A61 SoyBaseE_val: 2.00E-15ISS

Expression Patterns of Glyma04g34571
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g34571 not represented in the dataset
Glyma04g34571 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g34571 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g176100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g34571
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g34571
>Glyma04g34571.1   sequence type=CDS   gene model=Glyma04g34571   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGATATTTTCTTTAGGCTTGTTTCATTTTGCTCCATTATTGAATGCTATTTTTTGTTATCAGCTTCCAATGGGAACATTACAGAGCCGTTTGGATGCTGACTTTCTCCTATCTCATATGTGCTCTGTTAAGTTTAAGGAATGGATAGTTGTCCTGGCTACTCTCTTAAGACGTTTTGAGGTATGTTTGGCTTCTCTATGTACAGGACAGTGA
Predicted protein sequences of Glyma04g34571
>Glyma04g34571.1   sequence type=predicted peptide   gene model=Glyma04g34571   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLIFSLGLFHFAPLLNAIFCYQLPMGTLQSRLDADFLLSHMCSVKFKEWIVVLATLLRRFEVCLASLCTGQ*






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