SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G18890 | AT | Annotation by Michelle Graham. TAIR10: calcium-dependent protein kinase 1 | chr1:6523468-6525736 REVERSE LENGTH=545 | SoyBase | E_val: 0 | ISS |
| GO:0000165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: MAPK cascade | SoyBase | N/A | ISS |
| GO:0006468 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein phosphorylation | SoyBase | N/A | ISS |
| GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
| GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0007154 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell communication | SoyBase | N/A | ISS |
| GO:0007165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: signal transduction | SoyBase | N/A | ISS |
| GO:0009409 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cold | SoyBase | N/A | ISS |
| GO:0009414 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to water deprivation | SoyBase | N/A | ISS |
| GO:0009611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to wounding | SoyBase | N/A | ISS |
| GO:0009627 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance | SoyBase | N/A | ISS |
| GO:0009697 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009723 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus | SoyBase | N/A | ISS |
| GO:0009733 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus | SoyBase | N/A | ISS |
| GO:0009738 | GO-bp | Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009753 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus | SoyBase | N/A | ISS |
| GO:0009862 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009863 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009867 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0030968 | GO-bp | Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response | SoyBase | N/A | ISS |
| GO:0031348 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response | SoyBase | N/A | ISS |
| GO:0035556 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction | SoyBase | N/A | ISS |
| GO:0042538 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response | SoyBase | N/A | ISS |
| GO:0043069 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death | SoyBase | N/A | ISS |
| GO:0045087 | GO-bp | Annotation by Michelle Graham. GO Biological Process: innate immune response | SoyBase | N/A | ISS |
| GO:0046777 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation | SoyBase | N/A | ISS |
| GO:0050832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0004672 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase activity | SoyBase | N/A | ISS |
| GO:0004674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity | SoyBase | N/A | ISS |
| GO:0004683 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calmodulin-dependent protein kinase activity | SoyBase | N/A | ISS |
| GO:0005509 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calcium ion binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinase activity | SoyBase | N/A | ISS |
| GO:0016772 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups | SoyBase | N/A | ISS |
| KOG0032 | KOG | Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily | JGI | ISS | |
| PTHR24349 | Panther | SERINE/THREONINE-PROTEIN KINASE | JGI | ISS | |
| PF00036 | PFAM | EF hand | JGI | ISS | |
| PF00069 | PFAM | Protein kinase domain | JGI | ISS | |
| UniRef100_B9R931 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Calcium-dependent protein kinase, putative n=1 Tax=Ricinus communis RepID=B9R931_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002339641 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002339641 related cluster n=1 Tax=unknown RepID=UPI0002339641 | SoyBase | E_val: 0 | ISS |
|
Glyma04g34440 not represented in the dataset |
Glyma04g34440 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g20170 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g175300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g34440.1 sequence type=CDS gene model=Glyma04g34440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAAACTGCAACGCCTGTGCGAAAGCTGATGTCGTAGAAGACAGCACCAACAACAGGAACAAGAAGTCTAATGAAACGAACCGCGGTGGTAGGAAGAAAGAGCAGAACCAGAAAAAACCGAACCCGTTCTCAGACGAACCGGCCCGGTCGGCGGCTCCGATCCGGGTCTTGAAGGACGTGATTCCAATGAGCCACCGGACGCGCATAAGCGACAAGTACATACTGGGCCGGGAACTGGGCCGGGGCGAGTTCGGCATCACCTACCTCTGCACGGACCGCGAGACCAAGGAGGCCCTGGCCTGCAAGTCGATTTCCAAGCGGAAGCTCCGAACCGCCGTGGACATCGAAGACGTGCGCCGCGAGGTCGCCATCATGTCCACGCTGCCGGAGCACCCCAACATAGTGAAGCTGAAGGCAACCTACGAGGACAACGAGAACGTCCACCTCGTCATGGAGCTCTGCGAGGGAGGCGAGCTCTTCGACCGGATTGTCGCCCGCGGTCACTACAGCGAGCGCGCCGCCGCTTCCGTGGCACGCACCATCGCCGAGGTTGTCAGGATGTGCCACAGCAATGGGGTCATGCACAGGGACCTCAAGCCCGAGAATTTCCTCTTCGCTAACAAGAAAGAGAATTCCGCTCTCAAGGCCATCGATTTCGGCCTCTCCGTCTTCTTCAAGCCAGGGGAGAGGTTTGTGGAGATTGTTGGGAGTCCTTACTATATGGCGCCAGAGGTTTTGAAGCGGAATTACGGGCCGGAGGTTGATGTGTGGAGTGCTGGGGTGATTCTTTATATTTTGTTGTGTGGTGTTCCTCCGTTTTGGGCAGAGACCGAGCAAGGTGTGGCTTTGGCGATCTTAAGAGGTGTGATTGACTTCAAGAGGGAACCTTGGCCACAGATATCGGAGAGTGCCAAGAGCCTTGTGCGGCGAATGTTGGAGCCGGATCCTAAAAAGCGCTTGACAGCGGAACAGGTGCTTGAACATCCCTGGCTGCAAAATGCAAAGAAAGCTCCAAATGTTCCATTAGGAGATATTGTGAGGTCAAGGCTTAAGCAGTTTTCTGTGATGAATAGATTCAAAAAGAAAGCTCTGCGGGTAATTGCAGAACATTTATCTGTTGAAGAGGTAGAAATAATCAAAGACATGTTTACATTGATGGATACTGACAAAGATGGCAGAGTAACATTTGAGGAACTGAAGGCTGGGTTGAGGAAGGTTGGTTCACAATTGGCTGAGCCGGAGATTAAGATGCTGATGGAAGTGGCTGATGTTGATGGGAATGGAGTACTTGACTATGGAGAGTTTGTAGCTGTTACAATTCACTTGCAAAAAATGGAGAATGATGAGCATTTCCACAAAGCATTCAAGTTTTTTGACAAAGATGGGAGTGGGTATATTGAGTTAGGTGAGCTAGAGGAAGCATTAGCAGATGAGTCAGGAGAAACTGATGCTGATGTATTGAATGACATCATGCGGGAAGTTGACACTGACAAGGATGGTTGCATCAGTTATGAGGAGTTTGTGGCAATGATGAAAACTGGAACTGACTGGAGAAAAGCATCCAGGCAATATTCAAGGGAGAGATTCAAGAGTTTGAGCCTAAATTTGATGAAAGATGGCTCGCTTCAGCTTCATGATGAAATTACTGGTCAAGCTGTGGTGGTTTGA
>Glyma04g34440.1 sequence type=predicted peptide gene model=Glyma04g34440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGNCNACAKADVVEDSTNNRNKKSNETNRGGRKKEQNQKKPNPFSDEPARSAAPIRVLKDVIPMSHRTRISDKYILGRELGRGEFGITYLCTDRETKEALACKSISKRKLRTAVDIEDVRREVAIMSTLPEHPNIVKLKATYEDNENVHLVMELCEGGELFDRIVARGHYSERAAASVARTIAEVVRMCHSNGVMHRDLKPENFLFANKKENSALKAIDFGLSVFFKPGERFVEIVGSPYYMAPEVLKRNYGPEVDVWSAGVILYILLCGVPPFWAETEQGVALAILRGVIDFKREPWPQISESAKSLVRRMLEPDPKKRLTAEQVLEHPWLQNAKKAPNVPLGDIVRSRLKQFSVMNRFKKKALRVIAEHLSVEEVEIIKDMFTLMDTDKDGRVTFEELKAGLRKVGSQLAEPEIKMLMEVADVDGNGVLDYGEFVAVTIHLQKMENDEHFHKAFKFFDKDGSGYIELGELEEALADESGETDADVLNDIMREVDTDKDGCISYEEFVAMMKTGTDWRKASRQYSRERFKSLSLNLMKDGSLQLHDEITGQAVVV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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