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Integrating Genetics and Genomics to Advance Soybean Research


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Report for Sequence Feature Glyma04g34251

Feature Type:gene_model
Chromosome:Gm04
Start:40366597
stop:40368239
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g34251
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G34050AT Annotation by Michelle Graham. TAIR10: INVOLVED IN: protein complex assembly; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: ATP11 (InterPro:IPR010591); Has 304 Blast hits to 304 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 101; Fungi - 112; Plants - 39; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink). | chr2:14382843-14384198 REVERSE LENGTH=248 SoyBaseE_val: 4.00E-67ISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
PTHR13126Panther CHAPERONE ATP11 JGI ISS
PF06644PFAM ATP11 protein JGI ISS
UniRef100_B9S955UniRef Annotation by Michelle Graham. Most informative UniRef hit: Chaperone atp11p, putative n=1 Tax=Ricinus communis RepID=B9S955_RICCO SoyBaseE_val: 3.00E-70ISS
UniRef100_UPI000233A48BUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233A48B related cluster n=1 Tax=unknown RepID=UPI000233A48B SoyBaseE_val: 1.00E-75ISS

Expression Patterns of Glyma04g34251
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g34251 not represented in the dataset
Glyma04g34251 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g34251 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g173800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g34251
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma04g34251
>Glyma04g34251.2   sequence type=transcript   gene model=Glyma04g34251   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGAAGAGGTCATATTGGAGCAACAATGAAAGCAAAACTTTATTACTTGCTGTAGCATAGAGCTTCAGAATGCCGATATTTTTGTCATTCCTTTATGGAGGGGAAGTGGATACACGACAATGTTTGTTCAAGTCCAGACGCCACACATGGTTTCTACAGGTCTTGAAGATTACAAGGCCAGGGGAACACAAGCGGCTCCTTACTTTATTGTGTCCTTTTACACAGAATTTGCAGAGAGCAAGGACTTGGTACTGATCCGTGGGGATGTCGTATTTACCAGCAAGCTTACTGACTCGGAGGCAAAATGGCTTTTGGAAGCTGCTCAGTCTTTTTATTTGAATGATGCTAGGTACAAACTGGTTGAGAGGTTCAAGAGACAAACACATGATTTTGAGTTCAAAGATGTCTTGCAAGTATTGGACATGCCTATTTTGTAACCTTTTTTTTAATTGGACAACTGCTAAACTAAACAGCAGTAAGGCAAGAGTGGAA
Coding sequences of Glyma04g34251
>Glyma04g34251.1   sequence type=CDS   gene model=Glyma04g34251   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGTACATACCTGGAAAGGTGGTCATTAACAAAAGCAAGGAGTGTGAAGATGGCACTGGTATGGTGTTCACAAGTATGGACTCAACCGATATTTTTGTCATTCCTTTATGGAGGGGAAGTGGATACACGACAATGTTTGTTCAAGTCCAGACGCCACACATGGTTTCTACAGGTCTTGAAGATTACAAGGCCAGGGGAACACAAGCGGCTCCTTACTTTATTGTGTCCTTTTACACAGAATTTGCAGAGAGCAAGGACTTGGTACTGATCCGTGGGGATGTCGTATTTACCAGCAAGCTTACTGACTCGGAGGCAAAATGGCTTTTGGAAGCTGCTCAGTCTTTTTATTTGAATGATGCTAGGTACAAACTGGTTGAGAGGTTCAAGAGACAAACACATGATTTTGAGTTCAAAGATGTCTTGCAAGTATTGGACATGCCTATTTTGTAA

>Glyma04g34251.2   sequence type=CDS   gene model=Glyma04g34251   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTGTTCAAGTCCAGACGCCACACATGGTTTCTACAGGTCTTGAAGATTACAAGGCCAGGGGAACACAAGCGGCTCCTTACTTTATTGTGTCCTTTTACACAGAATTTGCAGAGAGCAAGGACTTGGTACTGATCCGTGGGGATGTCGTATTTACCAGCAAGCTTACTGACTCGGAGGCAAAATGGCTTTTGGAAGCTGCTCAGTCTTTTTATTTGAATGATGCTAGGTACAAACTGGTTGAGAGGTTCAAGAGACAAACACATGATTTTGAGTTCAAAGATGTCTTGCAAGTATTGGACATGCCTATTTTGTAA
Predicted protein sequences of Glyma04g34251
>Glyma04g34251.1   sequence type=predicted peptide   gene model=Glyma04g34251   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKYIPGKVVINKSKECEDGTGMVFTSMDSTDIFVIPLWRGSGYTTMFVQVQTPHMVSTGLEDYKARGTQAAPYFIVSFYTEFAESKDLVLIRGDVVFTSKLTDSEAKWLLEAAQSFYLNDARYKLVERFKRQTHDFEFKDVLQVLDMPIL*

>Glyma04g34251.2   sequence type=predicted peptide   gene model=Glyma04g34251   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFVQVQTPHMVSTGLEDYKARGTQAAPYFIVSFYTEFAESKDLVLIRGDVVFTSKLTDSEAKWLLEAAQSFYLNDARYKLVERFKRQTHDFEFKDVLQVLDMPIL*






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