Glyma04g34220 - SoyBase

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Report for Sequence Feature Glyma04g34220

Feature Type:	gene_model
Chromosome:	Gm04
Start:	40321994
stop:	40328447
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g34220

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G15130	AT	Annotation by Michelle Graham. TAIR10: WRKY DNA-binding protein 72 \| chr5:4904426-4906879 FORWARD LENGTH=548	SoyBase	E_val: 2.00E-79	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006952	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PF03106	PFAM	WRKY DNA -binding domain	JGI		ISS
UniRef100_G7JPY7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WRKY transcription factor n=1 Tax=Medicago truncatula RepID=G7JPY7_MEDTR	SoyBase	E_val: 5.00E-143	ISS
UniRef100_UPI000233963A	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233963A related cluster n=1 Tax=unknown RepID=UPI000233963A	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma04g34220

Locus	Gene Symbol	Protein Name
	WRKY83	WRKY Transcription Factor

Expression Patterns of Glyma04g34220

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g34220

Paralog	Evidence	Comments
Glyma06g20300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g34220 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g173500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g34220

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g34220

Limit To All Plant Sequences

>Glyma04g34220.2   sequence type=CDS   gene model=Glyma04g34220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTTTGGTTCGGAAAGATCTGGTCATGAAGTCAAGGATGAGAAGAGAAGTGAATCTAGTGTTGGAGATGAAGAAGATCGTCGCGAACAAGAGATTATCACGCAGGAGCCACCCCTGTCTACTACAGAAAGATCCACGGTGGAGGTTGGGCCAAATGCTTCTTCCCTGACCAAAAAGGAAGAGGCTGTTGATGAACTTGAAACTGCCAAAGCCGAAATGGGTGAAGTGATGGAAGAAAATCAACGACTAAAGACGTGTTTGAGCCGAATACTAAACGATTACCGCACACTCCAAATGCAATTCCACAACAGAGTTGAACAAGAGACAAAAGACTCTTCTGATCAGAAAGTGAACAACAACAATGACCATCAAAGAGAGGAATCAGACCTAGTTTCCCTCAGTCTTGGAAGACTTCCAACTAGAAACAATGAGAAAGTTAATAATAAACCATTGAAAGAGGAAGAAAAAGAAGATAAAGAAGGCTTGTCCCTTGGATTGGACTGCAAATTTGAAACATCAAAATCTGGAAGCACAACTGAGCACTTGCCAAATCAAAGCCCTAATAACAGTGTTGAAGAAGTGCCAAAGGAAGAAGCAGCAGGTGAGAGTTGGCCACAAAGGAAGGGACACAAGACAGCTAGAGATACTACTGGTGAGGATGAAGTTTCTCAACAAAATCCTGCAAAGAAAGCAAGGGTTTGTGTTAGGGCAAGATGTGGCACCGCAACTATGAATGATGGGTGTCAATGGAGGAAATATGGACAGAAAATTTCAAAGGGAAATCCTTGCCCTCGAGCTTACTATCGTTGCACGGTTGCACCATCATGCCCCGTAAGAAAGCAGGTGCAAAGATGTGCTCAAGACATGTCCATATTAATGACCACCTACGAAGGTAACCACAACCACCCTCTTCCACTTTCAGCCACAGCCATGGCCTCCACCATTTCAGCAGCTGCTTCCATGCTATTATCCGGCTCATCAACCTCACACTCCGGATCAAGGCCTTCAACAGCCATGACCACCGCCGCTTCCTATCAGACGGTTCCAAATCAAAGCAATACTTACTTGTCCCATCCTGCAGCACTCTCATCTTCACCTTCACACCCCACCATCACTCTAGACCTCACTTCCAATAATAATCCATCCTCATCTTCTGTTCCTCTTGTTAAATTCACTTCGAATTCAACCTTTAATAACCCACAAAGGTACCCTCTTTCCACAAGCCTAAACTTCAGTTACTCAGAATCCAATAATGCAACTTCTTGGAGCAATAATGGGTTCCTCAGCTACAACAACACTCTACCATATAATAGCAATAGAAATGTGACAAATGTCCTTAGCAACATAAACCTTGGAAAACAACAACAACGACCATTGGAAAACATCTACAATTCCTACCTGCAAAGAAACAACAATATTAATCCAATCCCGCCACCACAACATTCTCTACCAGACACCATAGCTGCAGCAACAAAAGTAATCACAGCAGACCCCAATTGTCAATCAGCTTTGGCAGCAGCACTTACAACAATTATTGGCTCTGGAACTGGAAACACTACTCAAGGAAGCCATGGTGCTGCTAGGAAAACCTGA

Predicted protein sequences of Glyma04g34220

Limit To All Plant Sequences

>Glyma04g34220.2   sequence type=predicted peptide   gene model=Glyma04g34220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEFGSERSGHEVKDEKRSESSVGDEEDRREQEIITQEPPLSTTERSTVEVGPNASSLTKKEEAVDELETAKAEMGEVMEENQRLKTCLSRILNDYRTLQMQFHNRVEQETKDSSDQKVNNNNDHQREESDLVSLSLGRLPTRNNEKVNNKPLKEEEKEDKEGLSLGLDCKFETSKSGSTTEHLPNQSPNNSVEEVPKEEAAGESWPQRKGHKTARDTTGEDEVSQQNPAKKARVCVRARCGTATMNDGCQWRKYGQKISKGNPCPRAYYRCTVAPSCPVRKQVQRCAQDMSILMTTYEGNHNHPLPLSATAMASTISAAASMLLSGSSTSHSGSRPSTAMTTAASYQTVPNQSNTYLSHPAALSSSPSHPTITLDLTSNNNPSSSSVPLVKFTSNSTFNNPQRYPLSTSLNFSYSESNNATSWSNNGFLSYNNTLPYNSNRNVTNVLSNINLGKQQQRPLENIYNSYLQRNNNINPIPPPQHSLPDTIAAATKVITADPNCQSALAAALTTIIGSGTGNTTQGSHGAARKT*

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