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Report for Sequence Feature Glyma04g34220

Feature Type:gene_model
Chromosome:Gm04
Start:40321994
stop:40328447
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G15130AT Annotation by Michelle Graham. TAIR10: WRKY DNA-binding protein 72 | chr5:4904426-4906879 FORWARD LENGTH=548 SoyBaseE_val: 2.00E-79ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0006952GO-bp Annotation by Michelle Graham. GO Biological Process: defense response SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0043565GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding SoyBaseN/AISS
PF03106PFAM WRKY DNA -binding domain JGI ISS
UniRef100_G7JPY7UniRef Annotation by Michelle Graham. Most informative UniRef hit: WRKY transcription factor n=1 Tax=Medicago truncatula RepID=G7JPY7_MEDTR SoyBaseE_val: 5.00E-143ISS
UniRef100_UPI000233963AUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233963A related cluster n=1 Tax=unknown RepID=UPI000233963A SoyBaseE_val: 0ISS

LocusGene SymbolProtein Name
WRKY83 WRKY Transcription Factor

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma06g20300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g173500 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma04g34220.2   sequence type=CDS   gene model=Glyma04g34220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTTTGGTTCGGAAAGATCTGGTCATGAAGTCAAGGATGAGAAGAGAAGTGAATCTAGTGTTGGAGATGAAGAAGATCGTCGCGAACAAGAGATTATCACGCAGGAGCCACCCCTGTCTACTACAGAAAGATCCACGGTGGAGGTTGGGCCAAATGCTTCTTCCCTGACCAAAAAGGAAGAGGCTGTTGATGAACTTGAAACTGCCAAAGCCGAAATGGGTGAAGTGATGGAAGAAAATCAACGACTAAAGACGTGTTTGAGCCGAATACTAAACGATTACCGCACACTCCAAATGCAATTCCACAACAGAGTTGAACAAGAGACAAAAGACTCTTCTGATCAGAAAGTGAACAACAACAATGACCATCAAAGAGAGGAATCAGACCTAGTTTCCCTCAGTCTTGGAAGACTTCCAACTAGAAACAATGAGAAAGTTAATAATAAACCATTGAAAGAGGAAGAAAAAGAAGATAAAGAAGGCTTGTCCCTTGGATTGGACTGCAAATTTGAAACATCAAAATCTGGAAGCACAACTGAGCACTTGCCAAATCAAAGCCCTAATAACAGTGTTGAAGAAGTGCCAAAGGAAGAAGCAGCAGGTGAGAGTTGGCCACAAAGGAAGGGACACAAGACAGCTAGAGATACTACTGGTGAGGATGAAGTTTCTCAACAAAATCCTGCAAAGAAAGCAAGGGTTTGTGTTAGGGCAAGATGTGGCACCGCAACTATGAATGATGGGTGTCAATGGAGGAAATATGGACAGAAAATTTCAAAGGGAAATCCTTGCCCTCGAGCTTACTATCGTTGCACGGTTGCACCATCATGCCCCGTAAGAAAGCAGGTGCAAAGATGTGCTCAAGACATGTCCATATTAATGACCACCTACGAAGGTAACCACAACCACCCTCTTCCACTTTCAGCCACAGCCATGGCCTCCACCATTTCAGCAGCTGCTTCCATGCTATTATCCGGCTCATCAACCTCACACTCCGGATCAAGGCCTTCAACAGCCATGACCACCGCCGCTTCCTATCAGACGGTTCCAAATCAAAGCAATACTTACTTGTCCCATCCTGCAGCACTCTCATCTTCACCTTCACACCCCACCATCACTCTAGACCTCACTTCCAATAATAATCCATCCTCATCTTCTGTTCCTCTTGTTAAATTCACTTCGAATTCAACCTTTAATAACCCACAAAGGTACCCTCTTTCCACAAGCCTAAACTTCAGTTACTCAGAATCCAATAATGCAACTTCTTGGAGCAATAATGGGTTCCTCAGCTACAACAACACTCTACCATATAATAGCAATAGAAATGTGACAAATGTCCTTAGCAACATAAACCTTGGAAAACAACAACAACGACCATTGGAAAACATCTACAATTCCTACCTGCAAAGAAACAACAATATTAATCCAATCCCGCCACCACAACATTCTCTACCAGACACCATAGCTGCAGCAACAAAAGTAATCACAGCAGACCCCAATTGTCAATCAGCTTTGGCAGCAGCACTTACAACAATTATTGGCTCTGGAACTGGAAACACTACTCAAGGAAGCCATGGTGCTGCTAGGAAAACCTGA

>Glyma04g34220.2   sequence type=predicted peptide   gene model=Glyma04g34220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEFGSERSGHEVKDEKRSESSVGDEEDRREQEIITQEPPLSTTERSTVEVGPNASSLTKKEEAVDELETAKAEMGEVMEENQRLKTCLSRILNDYRTLQMQFHNRVEQETKDSSDQKVNNNNDHQREESDLVSLSLGRLPTRNNEKVNNKPLKEEEKEDKEGLSLGLDCKFETSKSGSTTEHLPNQSPNNSVEEVPKEEAAGESWPQRKGHKTARDTTGEDEVSQQNPAKKARVCVRARCGTATMNDGCQWRKYGQKISKGNPCPRAYYRCTVAPSCPVRKQVQRCAQDMSILMTTYEGNHNHPLPLSATAMASTISAAASMLLSGSSTSHSGSRPSTAMTTAASYQTVPNQSNTYLSHPAALSSSPSHPTITLDLTSNNNPSSSSVPLVKFTSNSTFNNPQRYPLSTSLNFSYSESNNATSWSNNGFLSYNNTLPYNSNRNVTNVLSNINLGKQQQRPLENIYNSYLQRNNNINPIPPPQHSLPDTIAAATKVITADPNCQSALAAALTTIIGSGTGNTTQGSHGAARKT*







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